Clone BS16238 Report

Search the DGRC for BS16238

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG33695-RF
Protein status:BS16238.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16238.3prime Sequence

873 bp (745 high quality bases) assembled on 2007-05-15

> BS16238.3prime
ATGGTCTAGAAAGCTTTCACCCGGCCACCTCCTCGCTGACAAAATCCAGC
TTGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTG
GACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGC
CTGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGA
TTGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTAC
TGTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCG
ACGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTC
GAAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTT
GGCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCA
TCTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTA
GACTGTGGATGCAGGATGATCTGCTTTGGCTGCGCCACCAGCTGTACGTG
CTGCACGATTGGCTGTGACTTGAATACTTGAGGAGGTGGCTGCTGAAGGG
GCTGCTGCGGCTGCTGTTGTGGCAGCGTCTGGAGAACGTGTTGCACCTGC
TGGACGGGCACTTGCTTGGCGGGAATGCCGGCGTCCTCGAAGGCCTTCTT
CTTCAGCGCCTGGCGGATCTGAGAAACGGTGCGGTTCTTGATGCTTAGGC
TGATCTTGGTCAGGTCGTCGGAGAAGCGCATTATGGACGAGTGCAGCATG
TCGATCTCCTCGTCCGTCCACTTCCCCGATGGCGACTCCGCATTGGGATG
CAGCTGCATGTCAACTGATAACT

BS16238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PA 918 CG33695-RA 75..918 860..17 4220 100 Minus
CG33695-PE 918 CG33695-RE 75..918 860..17 4220 100 Minus
CG33695-PF 843 CG33695-RF 1..843 859..17 4215 100 Minus
CG33695-PC 819 CG33695-RC 111..819 725..17 3545 100 Minus
CG33695-PD 825 CG33695-RD 117..825 725..17 3545 100 Minus
CG33695-PC 819 CG33695-RC 75..110 860..825 180 100 Minus
CG33695-PD 825 CG33695-RD 81..116 860..825 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..1010 860..17 4220 100 Minus
CG33695-RF 1456 CG33695-RF 229..1072 860..17 4220 100 Minus
CG33695-RD 1300 CG33695-RD 208..916 725..17 3545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279463 725..17 3545 100 Minus
2L 23513712 2L 11278574..11278673 825..726 500 100 Minus
2L 23513712 2L 11278450..11278486 860..824 185 100 Minus
Blast to na_te.dros performed 2015-02-13 06:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 651..345 198 55.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 652..522 169 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 626..408 163 58.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 652..589 140 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 652..586 137 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 631..321 135 54 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 689..589 132 60.2 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 689..589 132 60.2 Minus
roo 9092 roo DM_ROO 9092bp 1067..1108 631..590 129 78.6 Minus
roo 9092 roo DM_ROO 9092bp 1091..1168 652..576 126 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 631..579 121 69.8 Minus

BS16238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:51 Download gff for BS16238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PE 75..918 17..860 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:07 Download gff for BS16238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..1076 11..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:53 Download gff for BS16238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..1076 11..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:53 Download gff for BS16238.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278450..11278485 825..860 100 -> Minus
2L 11278575..11278673 726..824 100 -> Minus
2L 11278755..11279467 11..725 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:07 Download gff for BS16238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278450..11278485 825..860 100 -> Minus
arm_2L 11278575..11278673 726..824 100 -> Minus
arm_2L 11278755..11279467 11..725 99   Minus

BS16238.5prime Sequence

874 bp (818 high quality bases) assembled on 2007-05-15

> BS16238.5prime
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATGGTGTCCACCTGCTCGTCGACGCAGATCGTGGTGCCCGTTGT
GTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCCACGGTGGTGATTG
CCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGCAGCGGCGACAGTA
GGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCGGACCAGACGTGTC
CATGACCCTCAATCGCATCAATGTCCAGGAGAACGAGGTGGACGTGGAGG
AGTGCCTGCCCGCAGAGGTGGTNCAGCTGGATTTTGTCAGCGAGGAGGTG
GCCGGGTGAAAGCTTTCTAGACCA

BS16238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PA 918 CG33695-RA 75..918 16..859 4176 99.7 Plus
CG33695-PE 918 CG33695-RE 75..918 16..859 4176 99.7 Plus
CG33695-PF 843 CG33695-RF 1..843 17..859 4171 99.7 Plus
CG33695-PC 819 CG33695-RC 111..819 151..859 3501 99.7 Plus
CG33695-PD 825 CG33695-RD 117..825 151..859 3501 99.7 Plus
CG33695-PC 819 CG33695-RC 75..110 16..51 180 100 Plus
CG33695-PD 825 CG33695-RD 81..116 16..51 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..1010 16..859 4194 99.8 Plus
CG33695-RF 1456 CG33695-RF 229..1072 16..859 4194 99.8 Plus
CG33695-RD 1300 CG33695-RD 208..916 151..859 3519 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279463 151..859 3519 99.7 Plus
2L 23513712 2L 11278574..11278673 51..150 500 100 Plus
2L 23513712 2L 11278450..11278486 16..52 185 100 Plus
Blast to na_te.dros performed 2015-02-04 20:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 225..531 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 224..354 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 250..468 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 224..287 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 224..290 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 245..555 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 187..287 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 187..287 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 245..286 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 224..300 126 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 245..297 121 69.8 Plus

BS16238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:54 Download gff for BS16238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PE 75..918 16..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:43 Download gff for BS16238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..1076 16..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:53 Download gff for BS16238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..1076 16..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:53 Download gff for BS16238.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278450..11278485 16..51 100 -> Plus
2L 11278575..11278673 52..150 100 -> Plus
2L 11278755..11279467 151..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:43 Download gff for BS16238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278450..11278485 16..51 100 -> Plus
arm_2L 11278575..11278673 52..150 100 -> Plus
arm_2L 11278755..11279467 151..865 99   Plus

BS16238.complete Sequence

875 bp assembled on 2007-05-07

GenBank Submission: FJ638101

> BS16238.complete
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATGGTGTCCACCTGCTCGTCGACGCAGATCGTGGTGCCCGTTGT
GTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCCACGGTGGTGATTG
CCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGCAGCGGCGACAGTA
GGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCGGACCAGACGTGTC
CATGACCCTCAATCGCATCAATGTCCAGGAGAACGAGGTGGACGTGGAGG
AGTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGTCAGCGAGGAGGTG
GCCGGGTGAAAGCTTTCTAGACCAT

BS16238.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 918 CG33695-PE 75..918 16..859 4220 100 Plus
CG33695-RF 843 CG33695-PF 1..843 17..859 4215 100 Plus
CG33695-RD 825 CG33695-PD 117..825 151..859 3545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..1010 16..859 4220 100 Plus
CG33695-RF 1456 CG33695-RF 229..1072 16..859 4220 100 Plus
CG33695-RD 1300 CG33695-RD 208..916 151..859 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279463 151..859 3545 100 Plus
2L 23513712 2L 11278574..11278673 51..150 500 100 Plus
2L 23513712 2L 11278450..11278486 16..52 185 100 Plus
Blast to na_te.dros performed 2014-11-28 00:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 225..531 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 224..354 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 250..468 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 224..287 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 224..290 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 245..555 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 187..287 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 187..287 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 245..286 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 224..300 126 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 245..297 121 69.8 Plus

BS16238.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:25 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 75..918 16..859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:29 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RA 6760..7607 16..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:37 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 230..1071 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:27 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RA 6760..7607 16..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:59 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 230..1071 17..858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:59 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278575..11278673 52..150 100 -> Plus
2L 11278451..11278485 17..51 100 -> Plus
2L 11278755..11279462 151..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:37 Download gff for BS16238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278451..11278485 17..51 100 -> Plus
arm_2L 11278575..11278673 52..150 100 -> Plus
arm_2L 11278755..11279462 151..858 100   Plus

BS16238.pep Sequence

Translation from 16 to 858

> BS16238.pep
MQLHPNAESPSGKWTDEEIDMLHSSIMRFSDDLTKISLSIKNRTVSQIRQ
ALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQP
IVQHVQLVAQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAA
STANNTPTITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVST
VPTVLSPTVVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNR
INVQENEVDVEECLPAEVVKLDFVSEEVAG*

BS16238.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PF 280 CG33695-PF 1..280 1..280 1403 100 Plus
CG33695-PE 305 CG33695-PE 26..305 1..280 1403 100 Plus
CG33695-PC 272 CG33695-PC 26..272 1..280 1192 88.2 Plus
CG33695-PD 274 CG33695-PD 28..274 1..280 1192 88.2 Plus