Clone BS16240 Report

Search the DGRC for BS16240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG14621-RA
Protein status:BS16240.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16240.3prime Sequence

822 bp (774 high quality bases) assembled on 2007-05-15

> BS16240.3prime
ATGGTCTAGAAAGCTTCTAAACAAATAGTAGCCGCGTTGCCGTCCCGCTC
GGCATTCCGCTGCCATTCGCCAGCAGACTGTTTCCGGGCGTTCTGTGCAA
GCCATTGGATAGCTTCCCGTTGACCGATCCCCGGTAGTACGGATCTGCCT
GTTGCTCCAGCGGCGAGTACTTGACATAGCTAGTCTGCGACAGCGGCAGT
GTCGGTTGCTCGCGACCCCGCGTAAGCTGTTTGGCGCGATTGTAGCAGAG
CACACCCACAATGGCCAGCGTCATGCCTACGCAATTGACCCACGTCACTG
GGTTGCCCAGGATTAGGAGCGATACTGCGATCACAAATATTCGCTTCGAT
GCGCTGGCCACCGCATAGGTGAGCGGAGTCACCAGAGACAAGACGCTGAA
GGCGATGATGTTCTGCAGCCAGTTTAGGACACCGTCGGCGAAAAGCAGGG
CAATAACTCGATAGTCTAGGTTTTTAATGGCCGTGTGGCGGAATACTGCA
AAGCTGTCCATGTAAAGCCATAGGGGGAGGAAGATGAACAGCGACAGCTT
GCCAAGCAAATGCAGCAGCCGTAAATGGTGGATGTTGGTGTCCTTGAGAA
CCTTTTTTGAGAAAATGTTTTGCATGGAGAAGCCCATTGTGGAGATGAGG
GCGCTGATAAGGCCCATCATATCAAAGGAGATCTCCGTAACTGTGGCTAT
TCCCACGCCGGTGATAATGGGCAGCAGGCTCAGGTACACGAGTGTCGGTT
GTTTCTCACCAAAAAAAACGCGTGTCAGGACGACGGTGAATAGTGGCATT
GTGGCTTTGACCGTGTGCGCGT

BS16240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-PA 1122 CG14621-RA 317..1122 822..17 4030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-RC 1461 CG14621-RC 464..1269 822..17 4030 100 Minus
CG14621-RB 2200 CG14621-RB 576..1381 822..17 4030 100 Minus
CG14621-RD 2068 CG14621-RD 1071..1876 822..17 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22446531..22446989 475..17 2295 100 Minus
X 23542271 X 22445774..22445985 811..600 1060 100 Minus
X 23542271 X 22446047..22446174 603..476 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:04:12 has no hits.

BS16240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:30 Download gff for BS16240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-PA 317..1122 17..822 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:33 Download gff for BS16240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-RD 1071..1876 17..822 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:41 Download gff for BS16240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-RD 1071..1876 17..822 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:41 Download gff for BS16240.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22446531..22446992 14..475 99 -> Minus
X 22445771..22445983 602..814 99 -> Minus
X 22446049..22446174 476..601 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:33 Download gff for BS16240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21847607..21847819 602..814 99 -> Minus
arm_X 21847885..21848010 476..601 100 -> Minus
arm_X 21848367..21848828 14..475 99 -> Minus

BS16240.5prime Sequence

923 bp (806 high quality bases) assembled on 2007-05-15

> BS16240.5prime
GAAGTTATCAGTCGACATGCTAGGCAAGCGGACTGGGTCGCGGCACATAG
CGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCTCCTCCAGCAAC
AACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTTCCGATGACCGT
GACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGGACCCTTCTTCA
ACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTCCCTACTATTAC
CGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCCTCCGTCACCTC
GCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCACACGGTCAAAG
CCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTTTTTTTGGTGAG
AAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATTATCACCGGCGT
GGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGATGGGCCTTATCA
GCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACATTTTCTCAAAA
AAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTGCTGCATTTGCT
TGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCTTTACATGGACA
GCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAGACTATCGAGTT
ATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTGCAGAACATCAT
CGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTATGCGGTGGCCA
GCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCCTAATCCTGGGC
AACCCAGTGACGTGGGTCAATTGCGTANGCATGACGCTGGCCCATTGTGG
GTGTGCTCTGCTACAATCGCGCC

BS16240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-PA 1122 CG14621-RA 1..876 17..892 4361 99.8 Plus
CG14621-PA 1122 CG14621-RA 875..906 892..923 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-RB 2200 CG14621-RB 260..1165 17..923 4499 99.8 Plus
CG14621-RD 2068 CG14621-RD 755..1660 17..923 4499 99.8 Plus
CG14621-RA 1546 CG14621-RA 233..1138 17..923 4499 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22444981..22445308 17..344 1640 100 Plus
X 23542271 X 22446531..22446773 680..923 1159 99.2 Plus
X 23542271 X 22445774..22445985 344..555 1060 100 Plus
X 23542271 X 22446047..22446174 552..679 640 100 Plus
Blast to na_te.dros performed 2015-02-13 00:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 606..659 249..302 108 66.7 Plus

BS16240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:15 Download gff for BS16240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-PA 1..906 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:38 Download gff for BS16240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 223..1138 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:24 Download gff for BS16240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 223..1138 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:24 Download gff for BS16240.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22444971..22445308 9..344 98 -> Plus
X 22445775..22445983 345..553 100 -> Plus
X 22446049..22446174 554..679 100 -> Plus
X 22446531..22446773 680..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:38 Download gff for BS16240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21846807..21847144 9..344 98 -> Plus
arm_X 21847611..21847819 345..553 100 -> Plus
arm_X 21847885..21848010 554..679 100 -> Plus
arm_X 21848367..21848609 680..923 99   Plus

BS16240.complete Sequence

1154 bp assembled on 2007-05-07

GenBank Submission: FJ638102

> BS16240.complete
GAAGTTATCAGTCGACATGCTAGGCAAGCGGACTGGGTCGCGGCACATAG
CGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCTCCTCCAGCAAC
AACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTTCCGATGACCGT
GACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGGACCCTTCTTCA
ACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTCCCTACTATTAC
CGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCCTCCGTCACCTC
GCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCACACGGTCAAAG
CCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTTTTTTTGGTGAG
AAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATTATCACCGGCGT
GGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGATGGGCCTTATCA
GCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACATTTTCTCAAAA
AAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTGCTGCATTTGCT
TGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCTTTACATGGACA
GCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAGACTATCGAGTT
ATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTGCAGAACATCAT
CGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTATGCGGTGGCCA
GCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCCTAATCCTGGGC
AACCCAGTGACGTGGGTCAATTGCGTAGGCATGACGCTGGCCATTGTGGG
TGTGCTCTGCTACAATCGCGCCAAACAGCTTACGCGGGGTCGCGAGCAAC
CGACACTGCCGCTGTCGCAGACTAGCTATGTCAAGTACTCGCCGCTGGAG
CAACAGGCAGATCCGTACTACCGGGGATCGGTCAACGGGAAGCTATCCAA
TGGCTTGCACAGAACGCCCGGAAACAGTCTGCTGGCGAATGGCAGCGGAA
TGCCGAGCGGGACGGCAACGCGGCTACTATTTGTTTAGAAGCTTTCTAGA
CCAT

BS16240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-RB 1122 CG14621-PB 1..1122 17..1138 5610 100 Plus
CG14621-RD 1122 CG14621-PD 1..1122 17..1138 5610 100 Plus
CG14621-RA 1122 CG14621-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-RB 2200 CG14621-RB 260..1381 17..1138 5610 100 Plus
CG14621-RD 2068 CG14621-RD 755..1876 17..1138 5610 100 Plus
CG14621-RA 1546 CG14621-RA 233..1354 17..1138 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22446531..22446989 680..1138 2295 100 Plus
X 23542271 X 22444981..22445308 17..344 1640 100 Plus
X 23542271 X 22445774..22445985 344..555 1060 100 Plus
X 23542271 X 22446047..22446174 552..679 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:57:40 has no hits.

BS16240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:28 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:30 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 218..1349 9..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:19 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 233..1354 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:29 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 218..1349 9..1138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:13 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
CG14621-RA 233..1354 17..1138 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:13 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
X 22444981..22445308 17..344 100 -> Plus
X 22445775..22445983 345..553 100 -> Plus
X 22446049..22446174 554..679 100 -> Plus
X 22446531..22446989 680..1138 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:19 Download gff for BS16240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21846817..21847144 17..344 100 -> Plus
arm_X 21847611..21847819 345..553 100 -> Plus
arm_X 21847885..21848010 554..679 100 -> Plus
arm_X 21848367..21848825 680..1138 100   Plus

BS16240.pep Sequence

Translation from 16 to 1137

> BS16240.pep
MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL
CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW
KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV
TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL
FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL
SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN
RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT
PGNSLLANGSGMPSGTATRLLFV*

BS16240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14621-PB 373 CG14621-PB 1..373 1..373 1907 100 Plus
CG14621-PD 373 CG14621-PD 1..373 1..373 1907 100 Plus
CG14621-PA 373 CG14621-PA 1..373 1..373 1907 100 Plus
CG14621-PC 260 CG14621-PC 1..260 114..373 1314 100 Plus