Clone Sequence Records
BS16240.3prime Sequence
822 bp (774 high quality bases) assembled on 2007-05-15
> BS16240.3prime
ATGGTCTAGAAAGCTTCTAAACAAATAGTAGCCGCGTTGCCGTCCCGCTC
GGCATTCCGCTGCCATTCGCCAGCAGACTGTTTCCGGGCGTTCTGTGCAA
GCCATTGGATAGCTTCCCGTTGACCGATCCCCGGTAGTACGGATCTGCCT
GTTGCTCCAGCGGCGAGTACTTGACATAGCTAGTCTGCGACAGCGGCAGT
GTCGGTTGCTCGCGACCCCGCGTAAGCTGTTTGGCGCGATTGTAGCAGAG
CACACCCACAATGGCCAGCGTCATGCCTACGCAATTGACCCACGTCACTG
GGTTGCCCAGGATTAGGAGCGATACTGCGATCACAAATATTCGCTTCGAT
GCGCTGGCCACCGCATAGGTGAGCGGAGTCACCAGAGACAAGACGCTGAA
GGCGATGATGTTCTGCAGCCAGTTTAGGACACCGTCGGCGAAAAGCAGGG
CAATAACTCGATAGTCTAGGTTTTTAATGGCCGTGTGGCGGAATACTGCA
AAGCTGTCCATGTAAAGCCATAGGGGGAGGAAGATGAACAGCGACAGCTT
GCCAAGCAAATGCAGCAGCCGTAAATGGTGGATGTTGGTGTCCTTGAGAA
CCTTTTTTGAGAAAATGTTTTGCATGGAGAAGCCCATTGTGGAGATGAGG
GCGCTGATAAGGCCCATCATATCAAAGGAGATCTCCGTAACTGTGGCTAT
TCCCACGCCGGTGATAATGGGCAGCAGGCTCAGGTACACGAGTGTCGGTT
GTTTCTCACCAAAAAAAACGCGTGTCAGGACGACGGTGAATAGTGGCATT
GTGGCTTTGACCGTGTGCGCGT
BS16240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-PA | 1122 | CG14621-RA | 317..1122 | 822..17 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-RC | 1461 | CG14621-RC | 464..1269 | 822..17 | 4030 | 100 | Minus |
CG14621-RB | 2200 | CG14621-RB | 576..1381 | 822..17 | 4030 | 100 | Minus |
CG14621-RD | 2068 | CG14621-RD | 1071..1876 | 822..17 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22446531..22446989 | 475..17 | 2295 | 100 | Minus |
X | 23542271 | X | 22445774..22445985 | 811..600 | 1060 | 100 | Minus |
X | 23542271 | X | 22446047..22446174 | 603..476 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:04:12 has no hits.
BS16240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:30 Download gff for
BS16240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-PA | 317..1122 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:33 Download gff for
BS16240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RD | 1071..1876 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:41 Download gff for
BS16240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RD | 1071..1876 | 17..822 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:41 Download gff for
BS16240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22446531..22446992 | 14..475 | 99 | -> | Minus |
X | 22445771..22445983 | 602..814 | 99 | -> | Minus |
X | 22446049..22446174 | 476..601 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:33 Download gff for
BS16240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21847607..21847819 | 602..814 | 99 | -> | Minus |
arm_X | 21847885..21848010 | 476..601 | 100 | -> | Minus |
arm_X | 21848367..21848828 | 14..475 | 99 | -> | Minus |
BS16240.5prime Sequence
923 bp (806 high quality bases) assembled on 2007-05-15
> BS16240.5prime
GAAGTTATCAGTCGACATGCTAGGCAAGCGGACTGGGTCGCGGCACATAG
CGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCTCCTCCAGCAAC
AACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTTCCGATGACCGT
GACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGGACCCTTCTTCA
ACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTCCCTACTATTAC
CGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCCTCCGTCACCTC
GCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCACACGGTCAAAG
CCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTTTTTTTGGTGAG
AAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATTATCACCGGCGT
GGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGATGGGCCTTATCA
GCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACATTTTCTCAAAA
AAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTGCTGCATTTGCT
TGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCTTTACATGGACA
GCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAGACTATCGAGTT
ATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTGCAGAACATCAT
CGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTATGCGGTGGCCA
GCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCCTAATCCTGGGC
AACCCAGTGACGTGGGTCAATTGCGTANGCATGACGCTGGCCCATTGTGG
GTGTGCTCTGCTACAATCGCGCC
BS16240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-PA | 1122 | CG14621-RA | 1..876 | 17..892 | 4361 | 99.8 | Plus |
CG14621-PA | 1122 | CG14621-RA | 875..906 | 892..923 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-RB | 2200 | CG14621-RB | 260..1165 | 17..923 | 4499 | 99.8 | Plus |
CG14621-RD | 2068 | CG14621-RD | 755..1660 | 17..923 | 4499 | 99.8 | Plus |
CG14621-RA | 1546 | CG14621-RA | 233..1138 | 17..923 | 4499 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22444981..22445308 | 17..344 | 1640 | 100 | Plus |
X | 23542271 | X | 22446531..22446773 | 680..923 | 1159 | 99.2 | Plus |
X | 23542271 | X | 22445774..22445985 | 344..555 | 1060 | 100 | Plus |
X | 23542271 | X | 22446047..22446174 | 552..679 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 606..659 | 249..302 | 108 | 66.7 | Plus |
BS16240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:15 Download gff for
BS16240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-PA | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:38 Download gff for
BS16240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 223..1138 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:24 Download gff for
BS16240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 223..1138 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:24 Download gff for
BS16240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22444971..22445308 | 9..344 | 98 | -> | Plus |
X | 22445775..22445983 | 345..553 | 100 | -> | Plus |
X | 22446049..22446174 | 554..679 | 100 | -> | Plus |
X | 22446531..22446773 | 680..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:38 Download gff for
BS16240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21846807..21847144 | 9..344 | 98 | -> | Plus |
arm_X | 21847611..21847819 | 345..553 | 100 | -> | Plus |
arm_X | 21847885..21848010 | 554..679 | 100 | -> | Plus |
arm_X | 21848367..21848609 | 680..923 | 99 | | Plus |
BS16240.complete Sequence
1154 bp assembled on 2007-05-07
GenBank Submission: FJ638102
> BS16240.complete
GAAGTTATCAGTCGACATGCTAGGCAAGCGGACTGGGTCGCGGCACATAG
CGGTCGTGCTGCTGATGTGCCTCTTCTGGTACGTGATCTCCTCCAGCAAC
AACGTGATCGGCAAGATGGTCCTGAACGAGTTCCCTTTTCCGATGACCGT
GACTCTGGTGCAGCTGTGCAGCATCACGCTGTACAGCGGACCCTTCTTCA
ACCTGTGGCGGATCCGGAAGTACCAGGACATACCTCGTCCCTACTATTAC
CGCCTTATTGTGCCGCTAGCGCTTGGCAAGCTCCTGGCCTCCGTCACCTC
GCACATCTCTCTATGGAAGGTGCCAGTTTCCTACGCGCACACGGTCAAAG
CCACAATGCCACTATTCACCGTCGTCCTGACACGCGTTTTTTTTGGTGAG
AAACAACCGACACTCGTGTACCTGAGCCTGCTGCCCATTATCACCGGCGT
GGGAATAGCCACAGTTACGGAGATCTCCTTTGATATGATGGGCCTTATCA
GCGCCCTCATCTCCACAATGGGCTTCTCCATGCAAAACATTTTCTCAAAA
AAGGTTCTCAAGGACACCAACATCCACCATTTACGGCTGCTGCATTTGCT
TGGCAAGCTGTCGCTGTTCATCTTCCTCCCCCTATGGCTTTACATGGACA
GCTTTGCAGTATTCCGCCACACGGCCATTAAAAACCTAGACTATCGAGTT
ATTGCCCTGCTTTTCGCCGACGGTGTCCTAAACTGGCTGCAGAACATCAT
CGCCTTCAGCGTCTTGTCTCTGGTGACTCCGCTCACCTATGCGGTGGCCA
GCGCATCGAAGCGAATATTTGTGATCGCAGTATCGCTCCTAATCCTGGGC
AACCCAGTGACGTGGGTCAATTGCGTAGGCATGACGCTGGCCATTGTGGG
TGTGCTCTGCTACAATCGCGCCAAACAGCTTACGCGGGGTCGCGAGCAAC
CGACACTGCCGCTGTCGCAGACTAGCTATGTCAAGTACTCGCCGCTGGAG
CAACAGGCAGATCCGTACTACCGGGGATCGGTCAACGGGAAGCTATCCAA
TGGCTTGCACAGAACGCCCGGAAACAGTCTGCTGGCGAATGGCAGCGGAA
TGCCGAGCGGGACGGCAACGCGGCTACTATTTGTTTAGAAGCTTTCTAGA
CCAT
BS16240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-RB | 1122 | CG14621-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG14621-RD | 1122 | CG14621-PD | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG14621-RA | 1122 | CG14621-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-RB | 2200 | CG14621-RB | 260..1381 | 17..1138 | 5610 | 100 | Plus |
CG14621-RD | 2068 | CG14621-RD | 755..1876 | 17..1138 | 5610 | 100 | Plus |
CG14621-RA | 1546 | CG14621-RA | 233..1354 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22446531..22446989 | 680..1138 | 2295 | 100 | Plus |
X | 23542271 | X | 22444981..22445308 | 17..344 | 1640 | 100 | Plus |
X | 23542271 | X | 22445774..22445985 | 344..555 | 1060 | 100 | Plus |
X | 23542271 | X | 22446047..22446174 | 552..679 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:57:40 has no hits.
BS16240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:28 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 1..1122 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:30 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 218..1349 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:19 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 233..1354 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:29 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 218..1349 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:13 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14621-RA | 233..1354 | 17..1138 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:13 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22444981..22445308 | 17..344 | 100 | -> | Plus |
X | 22445775..22445983 | 345..553 | 100 | -> | Plus |
X | 22446049..22446174 | 554..679 | 100 | -> | Plus |
X | 22446531..22446989 | 680..1138 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:19 Download gff for
BS16240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21846817..21847144 | 17..344 | 100 | -> | Plus |
arm_X | 21847611..21847819 | 345..553 | 100 | -> | Plus |
arm_X | 21847885..21848010 | 554..679 | 100 | -> | Plus |
arm_X | 21848367..21848825 | 680..1138 | 100 | | Plus |
BS16240.pep Sequence
Translation from 16 to 1137
> BS16240.pep
MLGKRTGSRHIAVVLLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQL
CSITLYSGPFFNLWRIRKYQDIPRPYYYRLIVPLALGKLLASVTSHISLW
KVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATV
TEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSL
FIFLPLWLYMDSFAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVL
SLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYN
RAKQLTRGREQPTLPLSQTSYVKYSPLEQQADPYYRGSVNGKLSNGLHRT
PGNSLLANGSGMPSGTATRLLFV*
BS16240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14621-PB | 373 | CG14621-PB | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PD | 373 | CG14621-PD | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PA | 373 | CG14621-PA | 1..373 | 1..373 | 1907 | 100 | Plus |
CG14621-PC | 260 | CG14621-PC | 1..260 | 114..373 | 1314 | 100 | Plus |