Clone BS16241 Report

Search the DGRC for BS16241

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptninaE-RA
Protein status:BS16241.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16241.3prime Sequence

858 bp (738 high quality bases) assembled on 2007-05-15

> BS16241.3prime
ATGGTCTAGAAAGCTTTTATGCCTTGGACTCGGCCTCGCTGGCGGTGGCC
TGCGATTGGGCATCGCTCGATTTGCCATCGTCGACCTTGCCAAAGACGCA
GCAAGGACACTTCTCCTTGAGGGCCAGGCGATATTTCGGATGGCTGATGC
CGTATACAATTGGATTGTAGCAGGCGGCCGATTTGGCGAAGCAAGCTCCC
CAAATGGTATTCAGTGGTGTAAGGCCCTCGAACTTGAACAGTCCCATGCA
GTTGATGACCAGGTATGGTGTCCACGCCATGAACCACAGCGTGATGGTGA
CCAGAGCCACCTTGGCCAGCTTGCCCTCGGCGCTCTTCTCGGCATCCTCA
GAGGAGCGGAGGGACTTGACATTCATCTTCTTGGCCTGCTCGCGCATGGC
CTTCTCGTGGGCGGAGACAGCAGCAATGATGAACCAGTAAGAGTAGCAGA
TCAGGAACAGCGGAATATAGTACACGAAGATGGAGTAGAAGATCAGGTAT
GAGCGTGGGTTCCAGTCGCGTTCCAAGTAGTCAATACCGCACGAGGTCAG
GTTACCCTCCGGCACATACCTGCTCCAGCCGAAGGCGGGCGCCAGGCACC
AAATGCTCGACATGAACCAGATGTAGGCAATCTTGCCCAGGGCCAGCGGA
ATGGTCATCGGCCGGCCGGCCATGCCCTTGACGATCACTTGGTAGCGATC
CAGGGAGATCATGCACATGGACCAGATGGAGCTGCAGCCAAAGGCCGAGC
CCAGTCCGGCGTATATGTCGCACATCATGGGTCCGAGCACCCAGGTCTCG
AAATACAGATTTATGCCCATCATGGGCGTGTTTGTGATCATGATGCCAAA
GTCGGAGA

BS16241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4550-PA 1122 ninaE-RA 281..1122 858..17 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
ninaE-RA 1588 CG4550-RA 457..1299 858..16 4215 100 Minus
Rh2-RA 1365 CG16740-RA 415..1128 800..87 765 74.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19887397..19887687 568..858 1455 100 Plus
3R 32079331 3R 19886740..19887017 144..421 1390 100 Plus
3R 32079331 3R 19887075..19887225 421..571 755 100 Plus
3R 32079331 3R 18899933..18900586 800..147 675 73.5 Minus
3R 32079331 3R 19886544..19886673 16..145 650 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:48 has no hits.

BS16241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:40 Download gff for BS16241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4550-PA 282..1122 17..857 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:08 Download gff for BS16241.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 458..1305 10..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:07 Download gff for BS16241.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 458..1305 10..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:07 Download gff for BS16241.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19886538..19886671 10..143 98 <- Plus
3R 19886740..19887017 144..421 100 <- Plus
3R 19887076..19887223 422..569 100 <- Plus
3R 19887399..19887686 570..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:08 Download gff for BS16241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15712260..15712393 10..143 98 <- Plus
arm_3R 15712462..15712739 144..421 100 <- Plus
arm_3R 15712798..15712945 422..569 100 <- Plus
arm_3R 15713121..15713408 570..857 100   Plus

BS16241.5prime Sequence

880 bp (773 high quality bases) assembled on 2007-05-15

> BS16241.5prime
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGA
GAAGGCCATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCGCT
CCTCTGAGGATGCCGAGAAGAGCGCCGAGGGCAAGCTGGGCCAAGTGGCT
CTGGTCACCATCACGCTGTGGTTCATGGCG

BS16241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4550-PA 1122 ninaE-RA 1..864 17..880 4245 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
ninaE-RA 1588 CG4550-RA 177..1040 17..880 4275 99.8 Plus
Rh2-RA 1365 CG16740-RA 272..939 212..879 520 72.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19887397..19887961 587..23 2825 100 Minus
3R 32079331 3R 19887075..19887225 734..584 755 100 Minus
3R 32079331 3R 19886871..19887017 880..734 690 98 Minus
3R 32079331 3R 18899790..18900457 212..879 505 71.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:33:17 has no hits.

BS16241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:24 Download gff for BS16241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4550-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:46 Download gff for BS16241.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 173..1040 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:34 Download gff for BS16241.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 173..1040 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:34 Download gff for BS16241.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19886871..19887017 734..880 98 <- Minus
3R 19887076..19887223 586..733 100 <- Minus
3R 19887399..19887961 23..585 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:46 Download gff for BS16241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15712593..15712739 734..880 98 <- Minus
arm_3R 15712798..15712945 586..733 100 <- Minus
arm_3R 15713121..15713683 23..585 100   Minus

BS16241.complete Sequence

1154 bp assembled on 2007-05-07

GenBank Submission: FJ638103

> BS16241.complete
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGA
GAAGGCCATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCGCT
CCTCTGAGGATGCCGAGAAGAGCGCCGAGGGCAAGCTGGCCAAGGTGGCT
CTGGTCACCATCACGCTGTGGTTCATGGCGTGGACACCATACCTGGTCAT
CAACTGCATGGGACTGTTCAAGTTCGAGGGCCTTACACCACTGAATACCA
TTTGGGGAGCTTGCTTCGCCAAATCGGCCGCCTGCTACAATCCAATTGTA
TACGGCATCAGCCATCCGAAATATCGCCTGGCCCTCAAGGAGAAGTGTCC
TTGCTGCGTCTTTGGCAAGGTCGACGATGGCAAATCGAGCGATGCCCAAT
CGCAGGCCACCGCCAGCGAGGCCGAGTCCAAGGCATAAAAGCTTTCTAGA
CCAT

BS16241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
ninaE-RA 1122 CG4550-PA 1..1122 17..1138 5610 100 Plus
Rh2-RA 1146 CG16740-PA 217..1073 212..1068 820 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
ninaE-RA 1588 CG4550-RA 177..1299 17..1139 5615 100 Plus
Rh2-RA 1365 CG16740-RA 272..1128 212..1068 820 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19887397..19887961 587..23 2825 100 Minus
3R 32079331 3R 19886740..19887017 1011..734 1390 100 Minus
3R 32079331 3R 19887075..19887225 734..584 755 100 Minus
3R 32079331 3R 18899790..18900586 212..1008 745 72.9 Plus
3R 32079331 3R 19886544..19886673 1139..1010 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:37:46 has no hits.

BS16241.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:30 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 1..1122 17..1138 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:32 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 173..1305 9..1145 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:47 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 177..1296 17..1136 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:30 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 173..1305 9..1145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:00 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
ninaE-RA 177..1296 17..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:00 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19886547..19886671 1012..1136 100 <- Minus
3R 19886740..19887017 734..1011 100 <- Minus
3R 19887076..19887223 586..733 100 <- Minus
3R 19887399..19887964 17..585 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:47 Download gff for BS16241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15712269..15712393 1012..1136 100 <- Minus
arm_3R 15712462..15712739 734..1011 100 <- Minus
arm_3R 15712798..15712945 586..733 100 <- Minus
arm_3R 15713121..15713686 17..585 99   Minus

BS16241.pep Sequence

Translation from 16 to 1137

> BS16241.pep
MESFAVAAAQLGPHFAPLSNGSVVDKVTPDMAHLISPYWNQFPAMDPIWA
KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIM
ITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
VIVKGMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSC
GIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMRE
QAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGL
FKFEGLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVFG
KVDDGKSSDAQSQATASEAESKA*

BS16241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
ninaE-PA 373 CG4550-PA 1..373 1..373 1999 100 Plus
Rh2-PA 381 CG16740-PA 14..381 9..373 1370 69.6 Plus
Rh6-PB 369 CG5192-PB 7..369 13..373 1025 52.1 Plus
Rh4-PA 378 CG9668-PA 31..377 27..373 586 39.7 Plus
Rh3-PA 383 CG10888-PA 35..382 27..373 581 37.7 Plus