Clone Sequence Records
BS16241.3prime Sequence
858 bp (738 high quality bases) assembled on 2007-05-15
> BS16241.3prime
ATGGTCTAGAAAGCTTTTATGCCTTGGACTCGGCCTCGCTGGCGGTGGCC
TGCGATTGGGCATCGCTCGATTTGCCATCGTCGACCTTGCCAAAGACGCA
GCAAGGACACTTCTCCTTGAGGGCCAGGCGATATTTCGGATGGCTGATGC
CGTATACAATTGGATTGTAGCAGGCGGCCGATTTGGCGAAGCAAGCTCCC
CAAATGGTATTCAGTGGTGTAAGGCCCTCGAACTTGAACAGTCCCATGCA
GTTGATGACCAGGTATGGTGTCCACGCCATGAACCACAGCGTGATGGTGA
CCAGAGCCACCTTGGCCAGCTTGCCCTCGGCGCTCTTCTCGGCATCCTCA
GAGGAGCGGAGGGACTTGACATTCATCTTCTTGGCCTGCTCGCGCATGGC
CTTCTCGTGGGCGGAGACAGCAGCAATGATGAACCAGTAAGAGTAGCAGA
TCAGGAACAGCGGAATATAGTACACGAAGATGGAGTAGAAGATCAGGTAT
GAGCGTGGGTTCCAGTCGCGTTCCAAGTAGTCAATACCGCACGAGGTCAG
GTTACCCTCCGGCACATACCTGCTCCAGCCGAAGGCGGGCGCCAGGCACC
AAATGCTCGACATGAACCAGATGTAGGCAATCTTGCCCAGGGCCAGCGGA
ATGGTCATCGGCCGGCCGGCCATGCCCTTGACGATCACTTGGTAGCGATC
CAGGGAGATCATGCACATGGACCAGATGGAGCTGCAGCCAAAGGCCGAGC
CCAGTCCGGCGTATATGTCGCACATCATGGGTCCGAGCACCCAGGTCTCG
AAATACAGATTTATGCCCATCATGGGCGTGTTTGTGATCATGATGCCAAA
GTCGGAGA
BS16241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4550-PA | 1122 | ninaE-RA | 281..1122 | 858..17 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaE-RA | 1588 | CG4550-RA | 457..1299 | 858..16 | 4215 | 100 | Minus |
Rh2-RA | 1365 | CG16740-RA | 415..1128 | 800..87 | 765 | 74.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19887397..19887687 | 568..858 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 19886740..19887017 | 144..421 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 19887075..19887225 | 421..571 | 755 | 100 | Plus |
3R | 32079331 | 3R | 18899933..18900586 | 800..147 | 675 | 73.5 | Minus |
3R | 32079331 | 3R | 19886544..19886673 | 16..145 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:48 has no hits.
BS16241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:40 Download gff for
BS16241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4550-PA | 282..1122 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:08 Download gff for
BS16241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 458..1305 | 10..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:07 Download gff for
BS16241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 458..1305 | 10..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:07 Download gff for
BS16241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19886538..19886671 | 10..143 | 98 | <- | Plus |
3R | 19886740..19887017 | 144..421 | 100 | <- | Plus |
3R | 19887076..19887223 | 422..569 | 100 | <- | Plus |
3R | 19887399..19887686 | 570..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:08 Download gff for
BS16241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15712260..15712393 | 10..143 | 98 | <- | Plus |
arm_3R | 15712462..15712739 | 144..421 | 100 | <- | Plus |
arm_3R | 15712798..15712945 | 422..569 | 100 | <- | Plus |
arm_3R | 15713121..15713408 | 570..857 | 100 | | Plus |
BS16241.5prime Sequence
880 bp (773 high quality bases) assembled on 2007-05-15
> BS16241.5prime
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGA
GAAGGCCATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCGCT
CCTCTGAGGATGCCGAGAAGAGCGCCGAGGGCAAGCTGGGCCAAGTGGCT
CTGGTCACCATCACGCTGTGGTTCATGGCG
BS16241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4550-PA | 1122 | ninaE-RA | 1..864 | 17..880 | 4245 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaE-RA | 1588 | CG4550-RA | 177..1040 | 17..880 | 4275 | 99.8 | Plus |
Rh2-RA | 1365 | CG16740-RA | 272..939 | 212..879 | 520 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19887397..19887961 | 587..23 | 2825 | 100 | Minus |
3R | 32079331 | 3R | 19887075..19887225 | 734..584 | 755 | 100 | Minus |
3R | 32079331 | 3R | 19886871..19887017 | 880..734 | 690 | 98 | Minus |
3R | 32079331 | 3R | 18899790..18900457 | 212..879 | 505 | 71.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:33:17 has no hits.
BS16241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:24 Download gff for
BS16241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4550-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:46 Download gff for
BS16241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 173..1040 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:34 Download gff for
BS16241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 173..1040 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:34 Download gff for
BS16241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19886871..19887017 | 734..880 | 98 | <- | Minus |
3R | 19887076..19887223 | 586..733 | 100 | <- | Minus |
3R | 19887399..19887961 | 23..585 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:46 Download gff for
BS16241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15712593..15712739 | 734..880 | 98 | <- | Minus |
arm_3R | 15712798..15712945 | 586..733 | 100 | <- | Minus |
arm_3R | 15713121..15713683 | 23..585 | 100 | | Minus |
BS16241.complete Sequence
1154 bp assembled on 2007-05-07
GenBank Submission: FJ638103
> BS16241.complete
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGA
GAAGGCCATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCGCT
CCTCTGAGGATGCCGAGAAGAGCGCCGAGGGCAAGCTGGCCAAGGTGGCT
CTGGTCACCATCACGCTGTGGTTCATGGCGTGGACACCATACCTGGTCAT
CAACTGCATGGGACTGTTCAAGTTCGAGGGCCTTACACCACTGAATACCA
TTTGGGGAGCTTGCTTCGCCAAATCGGCCGCCTGCTACAATCCAATTGTA
TACGGCATCAGCCATCCGAAATATCGCCTGGCCCTCAAGGAGAAGTGTCC
TTGCTGCGTCTTTGGCAAGGTCGACGATGGCAAATCGAGCGATGCCCAAT
CGCAGGCCACCGCCAGCGAGGCCGAGTCCAAGGCATAAAAGCTTTCTAGA
CCAT
BS16241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaE-RA | 1122 | CG4550-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Rh2-RA | 1146 | CG16740-PA | 217..1073 | 212..1068 | 820 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaE-RA | 1588 | CG4550-RA | 177..1299 | 17..1139 | 5615 | 100 | Plus |
Rh2-RA | 1365 | CG16740-RA | 272..1128 | 212..1068 | 820 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19887397..19887961 | 587..23 | 2825 | 100 | Minus |
3R | 32079331 | 3R | 19886740..19887017 | 1011..734 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 19887075..19887225 | 734..584 | 755 | 100 | Minus |
3R | 32079331 | 3R | 18899790..18900586 | 212..1008 | 745 | 72.9 | Plus |
3R | 32079331 | 3R | 19886544..19886673 | 1139..1010 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:46 has no hits.
BS16241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:30 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 1..1122 | 17..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:32 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 173..1305 | 9..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:47 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 177..1296 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:30 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 173..1305 | 9..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:00 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaE-RA | 177..1296 | 17..1136 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:00 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19886547..19886671 | 1012..1136 | 100 | <- | Minus |
3R | 19886740..19887017 | 734..1011 | 100 | <- | Minus |
3R | 19887076..19887223 | 586..733 | 100 | <- | Minus |
3R | 19887399..19887964 | 17..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:47 Download gff for
BS16241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15712269..15712393 | 1012..1136 | 100 | <- | Minus |
arm_3R | 15712462..15712739 | 734..1011 | 100 | <- | Minus |
arm_3R | 15712798..15712945 | 586..733 | 100 | <- | Minus |
arm_3R | 15713121..15713686 | 17..585 | 99 | | Minus |
BS16241.pep Sequence
Translation from 16 to 1137
> BS16241.pep
MESFAVAAAQLGPHFAPLSNGSVVDKVTPDMAHLISPYWNQFPAMDPIWA
KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIM
ITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
VIVKGMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSC
GIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMRE
QAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGL
FKFEGLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVFG
KVDDGKSSDAQSQATASEAESKA*
BS16241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaE-PA | 373 | CG4550-PA | 1..373 | 1..373 | 1999 | 100 | Plus |
Rh2-PA | 381 | CG16740-PA | 14..381 | 9..373 | 1370 | 69.6 | Plus |
Rh6-PB | 369 | CG5192-PB | 7..369 | 13..373 | 1025 | 52.1 | Plus |
Rh4-PA | 378 | CG9668-PA | 31..377 | 27..373 | 586 | 39.7 | Plus |
Rh3-PA | 383 | CG10888-PA | 35..382 | 27..373 | 581 | 37.7 | Plus |