Clone BS16242 Report

Search the DGRC for BS16242

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG1116-RB
Protein status:BS16242.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16242.3prime Sequence

883 bp (801 high quality bases) assembled on 2007-05-15

> BS16242.3prime
ATGGTCTAGAAAGCTTTTACTTTATAAGCAGGTTGAATGTCTGGTTTGGA
GCATAAATCTGGAGAGGATTCGCAGCGTAGACGGTCACGGGCAGATTCCA
TACCATCGTCTCCACGGGCATTTCAGACGGTGCTTTTAGCTCGCCGGACT
CCGGATTCGGAATGCCAAAGTCAATCAAAGTTGTGGTCACAAACTCGAAA
TGCAATCGCCATCGCACGTCGACGAGGTCTGTGCGGAATGTTGGTGTTAC
GTGCAGCGGAATGGGTACCACGACCTGGGTCTGCAGCGTTGCGTAGCACA
CTTGGTGGGAGGTGGAAATGGTCGAAAGTTTCCCGGTTGGCTCAGGCGCC
TCCTTAACCTTTGAGCTAGCCGATGTGGCCGACTTGTGGAGGTTATCTGC
CAACACTCCGCTAGCTATGCTGGCCATATCAAAGGAGTTCATCGAGGAGA
CATCATCGCCCGTCGAGGATTGCGACTGCAGCTGGTGATTTTGCACTGGT
TGCGGTCGGATGGAAAGCTCCTGCTGCTGCAGCTTTACCGAAAACTGGAC
GCAGCGCACCTTTCGGGGGTTAACGCCGGGATCAAAGTCCAGGCTGCCCA
CAATGTCCTCACCGAGCTTATACGCTGGCTTGAACAAACAAAAGCGGCCA
ACGAAGCCGCGTTTGTTCGAGATGCGGTAGAACTTCGGCGCCCGCCGAGC
GGTTACGTTCTTAAGGTGGTGCCACGATATCTCAAGCTCGCTGATCTCGC
GCTTTTCCAGGAACGGATTAGTGGGCGCCAGCTCTTCGTTGGTCTCTACG
GTTACGGGAAGTTCGTCGGGGCGCGAAATTATGGGAATTGGCAACACCCG
GGATGGGAACGGCCAGCGTTTGCACCTTGGACT

BS16242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 1083 CG1116-RB 249..1083 851..17 4125 99.7 Minus
CG1116-PA 1329 CG1116-RA 495..1329 851..17 4125 99.7 Minus
CG1116-PC 1329 CG1116-RC 495..1329 851..17 4125 99.7 Minus
CG1116-PB 1083 CG1116-RB 218..250 883..851 165 100 Minus
CG1116-PA 1329 CG1116-RA 464..496 883..851 165 100 Minus
CG1116-PC 1329 CG1116-RC 464..496 883..851 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 517..1386 883..13 4285 99.5 Minus
CG1116-RA 1570 CG1116-RA 514..1383 883..13 4285 99.5 Minus
CG1116-RB 1633 CG1116-RB 577..1446 883..13 4285 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220747..5221295 561..13 2715 99.6 Minus
3R 32079331 3R 5220298..5220470 883..710 805 98.9 Minus
3R 32079331 3R 5220534..5220687 711..558 770 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:05:46 has no hits.

BS16242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:44 Download gff for BS16242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-PC 464..1329 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:36 Download gff for BS16242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 577..1453 6..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:11 Download gff for BS16242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 577..1453 6..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:11 Download gff for BS16242.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5220298..5220470 710..883 98 -> Minus
3R 5220536..5220685 560..709 100 -> Minus
3R 5220749..5221293 14..559 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:36 Download gff for BS16242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1046020..1046192 710..883 98 -> Minus
arm_3R 1046258..1046407 560..709 100 -> Minus
arm_3R 1046471..1047015 14..559 99 -> Minus

BS16242.5prime Sequence

822 bp (772 high quality bases) assembled on 2007-05-15

> BS16242.5prime
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCCACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTA

BS16242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 1083 CG1116-RB 1..806 17..822 4005 99.8 Plus
CG1116-PA 1329 CG1116-RA 247..1052 17..822 4005 99.8 Plus
CG1116-PC 1329 CG1116-RC 247..1052 17..822 4005 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 300..1105 17..822 4015 99.9 Plus
CG1116-RA 1570 CG1116-RA 297..1102 17..822 4015 99.9 Plus
CG1116-RB 1633 CG1116-RB 360..1165 17..822 4015 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220199..5220470 135..406 1360 100 Plus
3R 32079331 3R 5220747..5221014 555..822 1325 99.6 Plus
3R 32079331 3R 5220534..5220687 405..558 770 100 Plus
3R 32079331 3R 5220016..5220133 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:16:02 has no hits.

BS16242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:29 Download gff for BS16242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-PC 239..1051 8..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:05 Download gff for BS16242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 352..1164 8..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:25 Download gff for BS16242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 352..1164 8..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:25 Download gff for BS16242.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5220008..5220133 8..134 96 -> Plus
3R 5220199..5220470 135..406 100 -> Plus
3R 5220536..5220685 407..556 100 -> Plus
3R 5220749..5221013 557..821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:05 Download gff for BS16242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1045730..1045855 8..134 96 -> Plus
arm_3R 1045921..1046192 135..406 100 -> Plus
arm_3R 1046258..1046407 407..556 100 -> Plus
arm_3R 1046471..1046735 557..821 99   Plus

BS16242.complete Sequence

1115 bp assembled on 2007-05-07

GenBank Submission: FJ638104

> BS16242.complete
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCAACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGGTA
CCCATTCCGCTGCACGTAACACCAACATTCCGCACAGACCTCGTCGACGT
GCGATGGCGATTGCATTTCGAGTTTGTGACCACAACTTTGATTGACTTTG
GCATTCCGAATCCGGAGTCCGGCGAGCTAAAAGCACCGTCTGAAATGCCC
GTGGAGACGATGGTATGGAATCTGCCCGTGACCGTCTACGCTGCGAATCC
TCTCCAGATTTATGCTCCAAACCAGACATTCAACCTGCTTATAAAGTAAA
AGCTTTCTAGACCAT

BS16242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1332 CG1116-PD 250..1332 17..1099 5400 99.9 Plus
CG1116-RA 1329 CG1116-PA 247..1329 17..1099 5400 99.9 Plus
CG1116-RB 1083 CG1116-PB 1..1083 17..1099 5400 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 300..1386 17..1103 5405 99.8 Plus
CG1116-RA 1570 CG1116-RA 297..1383 17..1103 5405 99.8 Plus
CG1116-RB 1633 CG1116-RB 360..1446 17..1103 5405 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220747..5221295 555..1103 2715 99.6 Plus
3R 32079331 3R 5220199..5220470 135..406 1360 100 Plus
3R 32079331 3R 5220534..5220687 405..558 770 100 Plus
3R 32079331 3R 5220016..5220133 17..134 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:05:15 has no hits.

BS16242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:32 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 239..1329 8..1099 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:34 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 278..1379 8..1110 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:37 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 360..1440 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:32 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 278..1379 8..1110 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:12 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 360..1440 17..1097 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:12 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5220016..5220133 17..134 100 -> Plus
3R 5220199..5220470 135..406 100 -> Plus
3R 5220536..5220685 407..556 100 -> Plus
3R 5220749..5221289 557..1097 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:37 Download gff for BS16242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1045738..1045855 17..134 100 -> Plus
arm_3R 1045921..1046192 135..406 100 -> Plus
arm_3R 1046258..1046407 407..556 100 -> Plus
arm_3R 1046471..1047011 557..1097 99   Plus

BS16242.pep Sequence

Translation from 16 to 1098

> BS16242.pep
MIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDG
PPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVT
VETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFV
GRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQ
PVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKE
APEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLH
FEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYA
PNQTFNLLIK*

BS16242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 360 CG1116-PB 1..360 1..360 1869 100 Plus
CG1116-PA 442 CG1116-PA 83..442 1..360 1869 100 Plus
CG1116-PD 443 CG1116-PD 84..443 1..360 1869 100 Plus