Clone Sequence Records
BS16242.3prime Sequence
883 bp (801 high quality bases) assembled on 2007-05-15
> BS16242.3prime
ATGGTCTAGAAAGCTTTTACTTTATAAGCAGGTTGAATGTCTGGTTTGGA
GCATAAATCTGGAGAGGATTCGCAGCGTAGACGGTCACGGGCAGATTCCA
TACCATCGTCTCCACGGGCATTTCAGACGGTGCTTTTAGCTCGCCGGACT
CCGGATTCGGAATGCCAAAGTCAATCAAAGTTGTGGTCACAAACTCGAAA
TGCAATCGCCATCGCACGTCGACGAGGTCTGTGCGGAATGTTGGTGTTAC
GTGCAGCGGAATGGGTACCACGACCTGGGTCTGCAGCGTTGCGTAGCACA
CTTGGTGGGAGGTGGAAATGGTCGAAAGTTTCCCGGTTGGCTCAGGCGCC
TCCTTAACCTTTGAGCTAGCCGATGTGGCCGACTTGTGGAGGTTATCTGC
CAACACTCCGCTAGCTATGCTGGCCATATCAAAGGAGTTCATCGAGGAGA
CATCATCGCCCGTCGAGGATTGCGACTGCAGCTGGTGATTTTGCACTGGT
TGCGGTCGGATGGAAAGCTCCTGCTGCTGCAGCTTTACCGAAAACTGGAC
GCAGCGCACCTTTCGGGGGTTAACGCCGGGATCAAAGTCCAGGCTGCCCA
CAATGTCCTCACCGAGCTTATACGCTGGCTTGAACAAACAAAAGCGGCCA
ACGAAGCCGCGTTTGTTCGAGATGCGGTAGAACTTCGGCGCCCGCCGAGC
GGTTACGTTCTTAAGGTGGTGCCACGATATCTCAAGCTCGCTGATCTCGC
GCTTTTCCAGGAACGGATTAGTGGGCGCCAGCTCTTCGTTGGTCTCTACG
GTTACGGGAAGTTCGTCGGGGCGCGAAATTATGGGAATTGGCAACACCCG
GGATGGGAACGGCCAGCGTTTGCACCTTGGACT
BS16242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 1083 | CG1116-RB | 249..1083 | 851..17 | 4125 | 99.7 | Minus |
CG1116-PA | 1329 | CG1116-RA | 495..1329 | 851..17 | 4125 | 99.7 | Minus |
CG1116-PC | 1329 | CG1116-RC | 495..1329 | 851..17 | 4125 | 99.7 | Minus |
CG1116-PB | 1083 | CG1116-RB | 218..250 | 883..851 | 165 | 100 | Minus |
CG1116-PA | 1329 | CG1116-RA | 464..496 | 883..851 | 165 | 100 | Minus |
CG1116-PC | 1329 | CG1116-RC | 464..496 | 883..851 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 517..1386 | 883..13 | 4285 | 99.5 | Minus |
CG1116-RA | 1570 | CG1116-RA | 514..1383 | 883..13 | 4285 | 99.5 | Minus |
CG1116-RB | 1633 | CG1116-RB | 577..1446 | 883..13 | 4285 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220747..5221295 | 561..13 | 2715 | 99.6 | Minus |
3R | 32079331 | 3R | 5220298..5220470 | 883..710 | 805 | 98.9 | Minus |
3R | 32079331 | 3R | 5220534..5220687 | 711..558 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:05:46 has no hits.
BS16242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:44 Download gff for
BS16242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-PC | 464..1329 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:36 Download gff for
BS16242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 577..1453 | 6..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:11 Download gff for
BS16242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 577..1453 | 6..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:11 Download gff for
BS16242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220298..5220470 | 710..883 | 98 | -> | Minus |
3R | 5220536..5220685 | 560..709 | 100 | -> | Minus |
3R | 5220749..5221293 | 14..559 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:36 Download gff for
BS16242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1046020..1046192 | 710..883 | 98 | -> | Minus |
arm_3R | 1046258..1046407 | 560..709 | 100 | -> | Minus |
arm_3R | 1046471..1047015 | 14..559 | 99 | -> | Minus |
BS16242.5prime Sequence
822 bp (772 high quality bases) assembled on 2007-05-15
> BS16242.5prime
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCCACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTA
BS16242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 1083 | CG1116-RB | 1..806 | 17..822 | 4005 | 99.8 | Plus |
CG1116-PA | 1329 | CG1116-RA | 247..1052 | 17..822 | 4005 | 99.8 | Plus |
CG1116-PC | 1329 | CG1116-RC | 247..1052 | 17..822 | 4005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 300..1105 | 17..822 | 4015 | 99.9 | Plus |
CG1116-RA | 1570 | CG1116-RA | 297..1102 | 17..822 | 4015 | 99.9 | Plus |
CG1116-RB | 1633 | CG1116-RB | 360..1165 | 17..822 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220199..5220470 | 135..406 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 5220747..5221014 | 555..822 | 1325 | 99.6 | Plus |
3R | 32079331 | 3R | 5220534..5220687 | 405..558 | 770 | 100 | Plus |
3R | 32079331 | 3R | 5220016..5220133 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:16:02 has no hits.
BS16242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:29 Download gff for
BS16242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-PC | 239..1051 | 8..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:05 Download gff for
BS16242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 352..1164 | 8..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:25 Download gff for
BS16242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 352..1164 | 8..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:25 Download gff for
BS16242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220008..5220133 | 8..134 | 96 | -> | Plus |
3R | 5220199..5220470 | 135..406 | 100 | -> | Plus |
3R | 5220536..5220685 | 407..556 | 100 | -> | Plus |
3R | 5220749..5221013 | 557..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:05 Download gff for
BS16242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1045730..1045855 | 8..134 | 96 | -> | Plus |
arm_3R | 1045921..1046192 | 135..406 | 100 | -> | Plus |
arm_3R | 1046258..1046407 | 407..556 | 100 | -> | Plus |
arm_3R | 1046471..1046735 | 557..821 | 99 | | Plus |
BS16242.complete Sequence
1115 bp assembled on 2007-05-07
GenBank Submission: FJ638104
> BS16242.complete
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCAACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGGTA
CCCATTCCGCTGCACGTAACACCAACATTCCGCACAGACCTCGTCGACGT
GCGATGGCGATTGCATTTCGAGTTTGTGACCACAACTTTGATTGACTTTG
GCATTCCGAATCCGGAGTCCGGCGAGCTAAAAGCACCGTCTGAAATGCCC
GTGGAGACGATGGTATGGAATCTGCCCGTGACCGTCTACGCTGCGAATCC
TCTCCAGATTTATGCTCCAAACCAGACATTCAACCTGCTTATAAAGTAAA
AGCTTTCTAGACCAT
BS16242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1332 | CG1116-PD | 250..1332 | 17..1099 | 5400 | 99.9 | Plus |
CG1116-RA | 1329 | CG1116-PA | 247..1329 | 17..1099 | 5400 | 99.9 | Plus |
CG1116-RB | 1083 | CG1116-PB | 1..1083 | 17..1099 | 5400 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 300..1386 | 17..1103 | 5405 | 99.8 | Plus |
CG1116-RA | 1570 | CG1116-RA | 297..1383 | 17..1103 | 5405 | 99.8 | Plus |
CG1116-RB | 1633 | CG1116-RB | 360..1446 | 17..1103 | 5405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220747..5221295 | 555..1103 | 2715 | 99.6 | Plus |
3R | 32079331 | 3R | 5220199..5220470 | 135..406 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 5220534..5220687 | 405..558 | 770 | 100 | Plus |
3R | 32079331 | 3R | 5220016..5220133 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:05:15 has no hits.
BS16242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:32 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 239..1329 | 8..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:34 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 278..1379 | 8..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:37 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 360..1440 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:32 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 278..1379 | 8..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:12 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 360..1440 | 17..1097 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:12 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220016..5220133 | 17..134 | 100 | -> | Plus |
3R | 5220199..5220470 | 135..406 | 100 | -> | Plus |
3R | 5220536..5220685 | 407..556 | 100 | -> | Plus |
3R | 5220749..5221289 | 557..1097 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:37 Download gff for
BS16242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1045738..1045855 | 17..134 | 100 | -> | Plus |
arm_3R | 1045921..1046192 | 135..406 | 100 | -> | Plus |
arm_3R | 1046258..1046407 | 407..556 | 100 | -> | Plus |
arm_3R | 1046471..1047011 | 557..1097 | 99 | | Plus |
BS16242.pep Sequence
Translation from 16 to 1098
> BS16242.pep
MIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDG
PPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVT
VETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFV
GRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQ
PVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKE
APEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLH
FEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYA
PNQTFNLLIK*
BS16242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 360 | CG1116-PB | 1..360 | 1..360 | 1869 | 100 | Plus |
CG1116-PA | 442 | CG1116-PA | 83..442 | 1..360 | 1869 | 100 | Plus |
CG1116-PD | 443 | CG1116-PD | 84..443 | 1..360 | 1869 | 100 | Plus |