Clone BS16243 Report

Search the DGRC for BS16243

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCcm3-RA
Protein status:BS16243.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16243.3prime Sequence

657 bp (657 high quality bases) assembled on 2007-05-15

> BS16243.3prime
ATGGTCTAGAAAGCTTCTACTCGCATTTACTCTTAACTGTCAGCATTATT
TGATTCGTTTGCCGTATTAGAAAAAGTGCACTTATGAATACTGCATTCGG
TTGTCCTTCTTTGAAGTACTCCTTCAGCGTTGTGCTGAACTTCTTGGAAT
ATTTGACGAACTCCTTCTTACGCTGCTCCACAGCCTGCTTGCCCGTTACG
CCAGGTATAAACGAGCCGATCTCGTTGACCACATCGAGTAGTTTCTTTAT
GGCGCTGGCGATTTCCTTGATGGTCTCCAGGAAGGTCTTCCTGTCGTTTA
TCTCATCGGGTATGCGGCTGAGGATCACCTTGAGAGCCACGGACTTACGA
TTGAGCTCCTGGAAGGGCTCCTCCGTGCGCGTCAAGCGGTATTCATTGAG
GTCCGCTTCCGTAATTTTGCCCTGCAATCGGAGCACGGCCTCGTTTAGGT
TAACATTCAGATCGGCCCGCCGCACAATTGTGGCTACGAGGTCATAGCAG
AAGCCCGGATTGTTCTGCTCCGACTTGAGAATGGCGGAGCGCAGAGATTG
GGCAGCGCCAACGTCGCGTCGCTCGAGCTGGGAGAAAATGGGCCGCAGTA
TGACGGGCAGAACGAGAGACGACGTGGGCTCGCCCATTGTCATGTCGACT
GATAACT

BS16243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5073-PA 627 CG5073-RA 1..627 643..17 3135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..823 643..16 3140 100 Minus
CG6136-RD 2071 CG6136-RD 1..61 583..643 305 100 Plus
CG6136-RC 2177 CG6136-RC 1..61 583..643 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 580..400 905 100 Minus
3R 32079331 3R 15372849..15373013 266..102 825 100 Minus
3R 32079331 3R 15372631..15372764 399..266 670 100 Minus
3R 32079331 3R 15373386..15373471 101..16 430 100 Minus
3R 32079331 3R 15372152..15372217 643..578 330 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:27:00 has no hits.

BS16243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:46 Download gff for BS16243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-PA 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:47 Download gff for BS16243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 189..828 10..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:29 Download gff for BS16243.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 189..828 10..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:29 Download gff for BS16243.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15372145..15372217 578..650 95 -> Minus
3R 15372395..15372572 400..577 100 -> Minus
3R 15372631..15372763 267..399 100 -> Minus
3R 15372849..15373013 102..266 100 -> Minus
3R 15373386..15373476 10..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:47 Download gff for BS16243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11197867..11197939 578..650 95 -> Minus
arm_3R 11198117..11198294 400..577 100 -> Minus
arm_3R 11198353..11198485 267..399 100 -> Minus
arm_3R 11198571..11198735 102..266 100 -> Minus
arm_3R 11199108..11199198 10..101 96   Minus

BS16243.5prime Sequence

657 bp (657 high quality bases) assembled on 2007-05-15

> BS16243.5prime
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGTAGAAGCTTT
CTAGACC

BS16243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5073-PA 627 CG5073-RA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..823 17..644 3140 100 Plus
CG6136-RD 2071 CG6136-RD 1..61 77..17 305 100 Minus
CG6136-RC 2177 CG6136-RC 1..61 77..17 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 80..260 905 100 Plus
3R 32079331 3R 15372849..15373013 394..558 825 100 Plus
3R 32079331 3R 15372631..15372764 261..394 670 100 Plus
3R 32079331 3R 15373386..15373471 559..644 430 100 Plus
3R 32079331 3R 15372152..15372217 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:58:17 has no hits.

BS16243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:49 Download gff for BS16243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-PA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:16 Download gff for BS16243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 189..828 10..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:28 Download gff for BS16243.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 189..828 10..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:28 Download gff for BS16243.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15372145..15372217 10..82 95 -> Plus
3R 15372395..15372572 83..260 100 -> Plus
3R 15372631..15372763 261..393 100 -> Plus
3R 15372849..15373013 394..558 100 -> Plus
3R 15373386..15373476 559..650 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:16 Download gff for BS16243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11198571..11198735 394..558 100 -> Plus
arm_3R 11199108..11199198 559..650 96   Plus
arm_3R 11197867..11197939 10..82 95 -> Plus
arm_3R 11198117..11198294 83..260 100 -> Plus
arm_3R 11198353..11198485 261..393 100 -> Plus

BS16243.complete Sequence

659 bp assembled on 2007-05-07

GenBank Submission: FJ638105

> BS16243.complete
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGTAGAAGCTTT
CTAGACCAT

BS16243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 627 CG5073-PA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..823 17..644 3140 100 Plus
CG6136-RD 2071 CG6136-RD 1..61 77..17 305 100 Minus
CG6136-RC 2177 CG6136-RC 1..61 77..17 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 80..260 905 100 Plus
3R 32079331 3R 15372849..15373013 394..558 825 100 Plus
3R 32079331 3R 15372631..15372764 261..394 670 100 Plus
3R 32079331 3R 15373386..15373471 559..644 430 100 Plus
3R 32079331 3R 15372152..15372217 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:10:47 has no hits.

BS16243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:33 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:36 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 187..826 10..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:40 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 196..822 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:34 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 187..826 10..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:34 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 196..822 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:34 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15372849..15373013 394..558 100 -> Plus
3R 15373386..15373470 559..643 100   Plus
3R 15372152..15372217 17..82 100 -> Plus
3R 15372395..15372572 83..260 100 -> Plus
3R 15372631..15372763 261..393 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:40 Download gff for BS16243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11197874..11197939 17..82 100 -> Plus
arm_3R 11198117..11198294 83..260 100 -> Plus
arm_3R 11198353..11198485 261..393 100 -> Plus
arm_3R 11198571..11198735 394..558 100 -> Plus
arm_3R 11199108..11199192 559..643 100   Plus

BS16243.pep Sequence

Translation from 16 to 642

> BS16243.pep
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCE*

BS16243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-PA 208 CG5073-PA 1..208 1..208 1026 100 Plus