Clone Sequence Records
BS16243.3prime Sequence
657 bp (657 high quality bases) assembled on 2007-05-15
> BS16243.3prime
ATGGTCTAGAAAGCTTCTACTCGCATTTACTCTTAACTGTCAGCATTATT
TGATTCGTTTGCCGTATTAGAAAAAGTGCACTTATGAATACTGCATTCGG
TTGTCCTTCTTTGAAGTACTCCTTCAGCGTTGTGCTGAACTTCTTGGAAT
ATTTGACGAACTCCTTCTTACGCTGCTCCACAGCCTGCTTGCCCGTTACG
CCAGGTATAAACGAGCCGATCTCGTTGACCACATCGAGTAGTTTCTTTAT
GGCGCTGGCGATTTCCTTGATGGTCTCCAGGAAGGTCTTCCTGTCGTTTA
TCTCATCGGGTATGCGGCTGAGGATCACCTTGAGAGCCACGGACTTACGA
TTGAGCTCCTGGAAGGGCTCCTCCGTGCGCGTCAAGCGGTATTCATTGAG
GTCCGCTTCCGTAATTTTGCCCTGCAATCGGAGCACGGCCTCGTTTAGGT
TAACATTCAGATCGGCCCGCCGCACAATTGTGGCTACGAGGTCATAGCAG
AAGCCCGGATTGTTCTGCTCCGACTTGAGAATGGCGGAGCGCAGAGATTG
GGCAGCGCCAACGTCGCGTCGCTCGAGCTGGGAGAAAATGGGCCGCAGTA
TGACGGGCAGAACGAGAGACGACGTGGGCTCGCCCATTGTCATGTCGACT
GATAACT
BS16243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5073-PA | 627 | CG5073-RA | 1..627 | 643..17 | 3135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..823 | 643..16 | 3140 | 100 | Minus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 583..643 | 305 | 100 | Plus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 583..643 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 580..400 | 905 | 100 | Minus |
3R | 32079331 | 3R | 15372849..15373013 | 266..102 | 825 | 100 | Minus |
3R | 32079331 | 3R | 15372631..15372764 | 399..266 | 670 | 100 | Minus |
3R | 32079331 | 3R | 15373386..15373471 | 101..16 | 430 | 100 | Minus |
3R | 32079331 | 3R | 15372152..15372217 | 643..578 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:27:00 has no hits.
BS16243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:46 Download gff for
BS16243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-PA | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:47 Download gff for
BS16243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 189..828 | 10..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:29 Download gff for
BS16243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 189..828 | 10..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:29 Download gff for
BS16243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372145..15372217 | 578..650 | 95 | -> | Minus |
3R | 15372395..15372572 | 400..577 | 100 | -> | Minus |
3R | 15372631..15372763 | 267..399 | 100 | -> | Minus |
3R | 15372849..15373013 | 102..266 | 100 | -> | Minus |
3R | 15373386..15373476 | 10..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:47 Download gff for
BS16243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11197867..11197939 | 578..650 | 95 | -> | Minus |
arm_3R | 11198117..11198294 | 400..577 | 100 | -> | Minus |
arm_3R | 11198353..11198485 | 267..399 | 100 | -> | Minus |
arm_3R | 11198571..11198735 | 102..266 | 100 | -> | Minus |
arm_3R | 11199108..11199198 | 10..101 | 96 | | Minus |
BS16243.5prime Sequence
657 bp (657 high quality bases) assembled on 2007-05-15
> BS16243.5prime
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGTAGAAGCTTT
CTAGACC
BS16243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5073-PA | 627 | CG5073-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..823 | 17..644 | 3140 | 100 | Plus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 77..17 | 305 | 100 | Minus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 77..17 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 80..260 | 905 | 100 | Plus |
3R | 32079331 | 3R | 15372849..15373013 | 394..558 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15372631..15372764 | 261..394 | 670 | 100 | Plus |
3R | 32079331 | 3R | 15373386..15373471 | 559..644 | 430 | 100 | Plus |
3R | 32079331 | 3R | 15372152..15372217 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:58:17 has no hits.
BS16243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:49 Download gff for
BS16243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-PA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:16 Download gff for
BS16243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 189..828 | 10..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:28 Download gff for
BS16243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 189..828 | 10..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:28 Download gff for
BS16243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372145..15372217 | 10..82 | 95 | -> | Plus |
3R | 15372395..15372572 | 83..260 | 100 | -> | Plus |
3R | 15372631..15372763 | 261..393 | 100 | -> | Plus |
3R | 15372849..15373013 | 394..558 | 100 | -> | Plus |
3R | 15373386..15373476 | 559..650 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:16 Download gff for
BS16243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11198571..11198735 | 394..558 | 100 | -> | Plus |
arm_3R | 11199108..11199198 | 559..650 | 96 | | Plus |
arm_3R | 11197867..11197939 | 10..82 | 95 | -> | Plus |
arm_3R | 11198117..11198294 | 83..260 | 100 | -> | Plus |
arm_3R | 11198353..11198485 | 261..393 | 100 | -> | Plus |
BS16243.complete Sequence
659 bp assembled on 2007-05-07
GenBank Submission: FJ638105
> BS16243.complete
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGTAGAAGCTTT
CTAGACCAT
BS16243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 627 | CG5073-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..823 | 17..644 | 3140 | 100 | Plus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 77..17 | 305 | 100 | Minus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 77..17 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 80..260 | 905 | 100 | Plus |
3R | 32079331 | 3R | 15372849..15373013 | 394..558 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15372631..15372764 | 261..394 | 670 | 100 | Plus |
3R | 32079331 | 3R | 15373386..15373471 | 559..644 | 430 | 100 | Plus |
3R | 32079331 | 3R | 15372152..15372217 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:10:47 has no hits.
BS16243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:33 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:36 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 187..826 | 10..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:40 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 196..822 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:34 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 187..826 | 10..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:34 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 196..822 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:34 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372849..15373013 | 394..558 | 100 | -> | Plus |
3R | 15373386..15373470 | 559..643 | 100 | | Plus |
3R | 15372152..15372217 | 17..82 | 100 | -> | Plus |
3R | 15372395..15372572 | 83..260 | 100 | -> | Plus |
3R | 15372631..15372763 | 261..393 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:40 Download gff for
BS16243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11197874..11197939 | 17..82 | 100 | -> | Plus |
arm_3R | 11198117..11198294 | 83..260 | 100 | -> | Plus |
arm_3R | 11198353..11198485 | 261..393 | 100 | -> | Plus |
arm_3R | 11198571..11198735 | 394..558 | 100 | -> | Plus |
arm_3R | 11199108..11199192 | 559..643 | 100 | | Plus |
BS16243.pep Sequence
Translation from 16 to 642
> BS16243.pep
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCE*
BS16243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-PA | 208 | CG5073-PA | 1..208 | 1..208 | 1026 | 100 | Plus |