Clone Sequence Records
BS16246.3prime Sequence
889 bp (861 high quality bases) assembled on 2007-05-15
> BS16246.3prime
ATGGTCTAGAAAGCTTTTAGAATTTTGGATTCAAGACATTCGCAATAAAC
TCCTGCCACTTGCGCTGGAATACCCGATTGATTTTCCGCCTCTCGTCCGA
GGTGAGAACGGCGTACTTGATGGAGTTCAAGGCCAGCTGCTTGAGAAAGC
GCAGATCCGCATCCGCCGGAGCCAAGGCCATGAAGGCGTAGTAGAAATCG
TAGCTGAGACCCTTGGCTCCCCAAACACCCGGATCATCGGATGATATAAC
GATGGGAAAGTTCTCGGCTATCAGGAAGCTGGCCGGATGATTTCGCAGAT
CCCAGACGAAGCCCAAGACCTGGTTGGAAATGGGATTCACCTCGATGGCG
ATGTTACGCTTCTTGATGGTGGACCACAATTGTGGATGCTTGGGCAGGGC
GAAGGCATGGCCAATCCGCTTCGTATTCAGCAGAATGGCGTCCATCATGT
TCCAGTCCGTTCGGCCATTCCAATTCGTCTCGCCGGCGTGGAAGAAGTAG
TTTGCCGTGCTAGGAAGATCGGACAGTTGGTTGATATACCTGTTCAGCGG
TTCTCCAGTGTCCTCCTGACCAATCAGATCGAAACCAATCACAAAGTTCG
GTTTGGCATGGTGCAGCTGCTTAAAAGTGGTGATTCGGCGCAACATCTCC
TCCTCGGATGCGCGATTCCGCTTGGCATATATCACCTTAACACCGATGAA
GTCATGGTGCTTGGCCTTGAATTCCTCCACAATCCGTTCCAGCTCGTTGG
CCACCTCCAAGGTGCTCAGAGTTCGATTGTTGTCGTCGTACAGCGGCGAG
AGGGAGGCTCGTATCTCGGCATAGATAATGTTATCCTCGCAAAGTTCCTC
CAACATTCGCTTGTGATAGGCACAATAGGGTGGGTCGGT
BS16246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9621-PA | 1509 | Adgf-D-RA | 647..1509 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adgf-D-RA | 1613 | CG9621-RA | 713..1584 | 889..17 | 4340 | 99.9 | Minus |
ninaB-RA | 2164 | CG9347-RA | 2113..2164 | 17..68 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13703113..13703570 | 17..474 | 2290 | 100 | Plus |
3R | 32079331 | 3R | 13703872..13704054 | 612..794 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13703627..13703763 | 475..611 | 685 | 100 | Plus |
3R | 32079331 | 3R | 13704110..13704195 | 794..879 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:04:30 has no hits.
BS16246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:35 Download gff for
BS16246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9621-PA | 638..1509 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:35 Download gff for
BS16246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 713..1590 | 7..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:09 Download gff for
BS16246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 713..1590 | 7..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:09 Download gff for
BS16246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13703107..13703570 | 7..474 | 99 | <- | Plus |
3R | 13703627..13703763 | 475..611 | 100 | <- | Plus |
3R | 13703872..13704053 | 612..793 | 100 | <- | Plus |
3R | 13704110..13704204 | 794..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:35 Download gff for
BS16246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9528829..9529292 | 7..474 | 99 | <- | Plus |
arm_3R | 9529349..9529485 | 475..611 | 100 | <- | Plus |
arm_3R | 9529594..9529775 | 612..793 | 100 | <- | Plus |
arm_3R | 9529832..9529926 | 794..889 | 98 | | Plus |
BS16246.5prime Sequence
816 bp (782 high quality bases) assembled on 2007-05-15
> BS16246.5prime
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGC
TGGAACGGATTGTGGA
BS16246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9621-PA | 1509 | Adgf-D-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adgf-D-RA | 1613 | CG9621-RA | 76..875 | 17..816 | 4000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13704333..13704818 | 578..93 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 13704110..13704281 | 748..577 | 860 | 100 | Minus |
3R | 32079331 | 3R | 13705252..13705327 | 92..17 | 380 | 100 | Minus |
3R | 32079331 | 3R | 13703986..13704054 | 816..748 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:12:07 has no hits.
BS16246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:19 Download gff for
BS16246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9621-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:51 Download gff for
BS16246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 76..874 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:45 Download gff for
BS16246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 76..874 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:45 Download gff for
BS16246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13703987..13704053 | 749..815 | 100 | <- | Minus |
3R | 13704110..13704279 | 579..748 | 100 | <- | Minus |
3R | 13704333..13704818 | 93..578 | 100 | <- | Minus |
3R | 13705252..13705327 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:51 Download gff for
BS16246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9529709..9529775 | 749..815 | 100 | <- | Minus |
arm_3R | 9529832..9530001 | 579..748 | 100 | <- | Minus |
arm_3R | 9530055..9530540 | 93..578 | 100 | <- | Minus |
arm_3R | 9530974..9531049 | 17..92 | 100 | | Minus |
BS16246.complete Sequence
1541 bp assembled on 2007-05-07
GenBank Submission: FJ638106
> BS16246.complete
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGC
TGGAACGGATTGTGGAGGAATTCAAGGCCAAGCACCATGACTTCATCGGT
GTTAAGGTGATATATGCCAAGCGGAATCGCGCATCCGAGGAGGAGATGTT
GCGCCGAATCACCACTTTTAAGCAGCTGCACCATGCCAAACCGAACTTTG
TGATTGGTTTCGATCTGATTGGTCAGGAGGACACTGGAGAACCGCTGAAC
AGGTATATCAACCAACTGTCCGATCTTCCTAGCACGGCAAACTACTTCTT
CCACGCCGGCGAGACGAATTGGAATGGCCGAACGGACTGGAACATGATGG
ACGCCATTCTGCTGAATACGAAGCGGATTGGCCATGCCTTCGCCCTGCCC
AAGCATCCACAATTGTGGTCCACCATCAAGAAGCGTAACATCGCCATCGA
GGTGAATCCCATTTCCAACCAGGTCTTGGGCTTCGTCTGGGATCTGCGAA
ATCATCCGGCCAGCTTCCTGATAGCCGAGAACTTTCCCATCGTTATATCA
TCCGATGATCCGGGTGTTTGGGGAGCCAAGGGTCTCAGCTACGATTTCTA
CTACGCCTTCATGGCCTTGGCTCCGGCGGATGCGGATCTGCGCTTTCTCA
AGCAGCTGGCCTTGAACTCCATCAAGTACGCCGTTCTCACCTCGGACGAG
AGGCGGAAAATCAATCGGGTATTCCAGCGCAAGTGGCAGGAGTTTATTGC
GAATGTCTTGAATCCAAAATTCTAAAAGCTTTCTAGACCAT
BS16246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adgf-D-RA | 1509 | CG9621-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adgf-D-RA | 1613 | CG9621-RA | 76..1584 | 17..1525 | 7545 | 100 | Plus |
ninaB-RA | 2164 | CG9347-RA | 2113..2164 | 1525..1474 | 260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13704333..13704818 | 578..93 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 13703113..13703570 | 1525..1068 | 2290 | 100 | Minus |
3R | 32079331 | 3R | 13703872..13704054 | 930..748 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13704110..13704281 | 748..577 | 860 | 100 | Minus |
3R | 32079331 | 3R | 13703627..13703763 | 1067..931 | 685 | 100 | Minus |
3R | 32079331 | 3R | 13705252..13705327 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:18 has no hits.
BS16246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:13 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:17 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 132..1646 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:32:30 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 76..1582 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:13 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 132..1646 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:48 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adgf-D-RA | 76..1582 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:48 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13703627..13703763 | 931..1067 | 100 | <- | Minus |
3R | 13703872..13704053 | 749..930 | 100 | <- | Minus |
3R | 13704110..13704279 | 579..748 | 100 | <- | Minus |
3R | 13703115..13703570 | 1068..1523 | 100 | <- | Minus |
3R | 13704333..13704818 | 93..578 | 100 | <- | Minus |
3R | 13705252..13705327 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:32:30 Download gff for
BS16246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9528837..9529292 | 1068..1523 | 100 | <- | Minus |
arm_3R | 9529349..9529485 | 931..1067 | 100 | <- | Minus |
arm_3R | 9529594..9529775 | 749..930 | 100 | <- | Minus |
arm_3R | 9529832..9530001 | 579..748 | 100 | <- | Minus |
arm_3R | 9530055..9530540 | 93..578 | 100 | <- | Minus |
arm_3R | 9530974..9531049 | 17..92 | 100 | | Minus |
BS16246.pep Sequence
Translation from 16 to 1524
> BS16246.pep
MAMWFLGALVATVVLLTGSVQATDLPYETLREQIMEAERVASLGGNIWLS
SDEEKANSILMNAKRAEIAEGLKTPEKYAPAMHFFQGRQYVRQSEVFRMI
QKIPKGAFLHGHNTGMVTSRWIIQNLTTTNNLYTCRNVDGLLVFTYDQSG
CHSEVQNVCTERINAEDRGKYERQLEKHINMHGPRPEALLPNRKKIWERF
ENIFTTVDRLYKYRPTYCAYHKRMLEELCEDNIIYAEIRASLSPLYDDNN
RTLSTLEVANELERIVEEFKAKHHDFIGVKVIYAKRNRASEEEMLRRITT
FKQLHHAKPNFVIGFDLIGQEDTGEPLNRYINQLSDLPSTANYFFHAGET
NWNGRTDWNMMDAILLNTKRIGHAFALPKHPQLWSTIKKRNIAIEVNPIS
NQVLGFVWDLRNHPASFLIAENFPIVISSDDPGVWGAKGLSYDFYYAFMA
LAPADADLRFLKQLALNSIKYAVLTSDERRKINRVFQRKWQEFIANVLNP
KF*
BS16246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adgf-D-PA | 502 | CG9621-PA | 1..502 | 1..502 | 2649 | 100 | Plus |
Adgf-C-PA | 506 | CG9345-PA | 4..501 | 9..498 | 1107 | 43.8 | Plus |
Adgf-A-PB | 553 | CG5992-PB | 52..538 | 13..497 | 928 | 40.1 | Plus |
Adgf-A-PA | 553 | CG5992-PA | 52..538 | 13..497 | 928 | 40.1 | Plus |
Adgf-B-PA | 520 | CG5998-PA | 40..519 | 27..502 | 866 | 38.8 | Plus |