Clone BS16246 Report

Search the DGRC for BS16246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptAdgf-D-RA
Protein status:BS16246.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16246.3prime Sequence

889 bp (861 high quality bases) assembled on 2007-05-15

> BS16246.3prime
ATGGTCTAGAAAGCTTTTAGAATTTTGGATTCAAGACATTCGCAATAAAC
TCCTGCCACTTGCGCTGGAATACCCGATTGATTTTCCGCCTCTCGTCCGA
GGTGAGAACGGCGTACTTGATGGAGTTCAAGGCCAGCTGCTTGAGAAAGC
GCAGATCCGCATCCGCCGGAGCCAAGGCCATGAAGGCGTAGTAGAAATCG
TAGCTGAGACCCTTGGCTCCCCAAACACCCGGATCATCGGATGATATAAC
GATGGGAAAGTTCTCGGCTATCAGGAAGCTGGCCGGATGATTTCGCAGAT
CCCAGACGAAGCCCAAGACCTGGTTGGAAATGGGATTCACCTCGATGGCG
ATGTTACGCTTCTTGATGGTGGACCACAATTGTGGATGCTTGGGCAGGGC
GAAGGCATGGCCAATCCGCTTCGTATTCAGCAGAATGGCGTCCATCATGT
TCCAGTCCGTTCGGCCATTCCAATTCGTCTCGCCGGCGTGGAAGAAGTAG
TTTGCCGTGCTAGGAAGATCGGACAGTTGGTTGATATACCTGTTCAGCGG
TTCTCCAGTGTCCTCCTGACCAATCAGATCGAAACCAATCACAAAGTTCG
GTTTGGCATGGTGCAGCTGCTTAAAAGTGGTGATTCGGCGCAACATCTCC
TCCTCGGATGCGCGATTCCGCTTGGCATATATCACCTTAACACCGATGAA
GTCATGGTGCTTGGCCTTGAATTCCTCCACAATCCGTTCCAGCTCGTTGG
CCACCTCCAAGGTGCTCAGAGTTCGATTGTTGTCGTCGTACAGCGGCGAG
AGGGAGGCTCGTATCTCGGCATAGATAATGTTATCCTCGCAAAGTTCCTC
CAACATTCGCTTGTGATAGGCACAATAGGGTGGGTCGGT

BS16246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9621-PA 1509 Adgf-D-RA 647..1509 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 713..1584 889..17 4340 99.9 Minus
ninaB-RA 2164 CG9347-RA 2113..2164 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13703113..13703570 17..474 2290 100 Plus
3R 32079331 3R 13703872..13704054 612..794 915 100 Plus
3R 32079331 3R 13703627..13703763 475..611 685 100 Plus
3R 32079331 3R 13704110..13704195 794..879 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:04:30 has no hits.

BS16246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:35 Download gff for BS16246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9621-PA 638..1509 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:35 Download gff for BS16246.3prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 713..1590 7..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:09 Download gff for BS16246.3prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 713..1590 7..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:09 Download gff for BS16246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13703107..13703570 7..474 99 <- Plus
3R 13703627..13703763 475..611 100 <- Plus
3R 13703872..13704053 612..793 100 <- Plus
3R 13704110..13704204 794..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:35 Download gff for BS16246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9528829..9529292 7..474 99 <- Plus
arm_3R 9529349..9529485 475..611 100 <- Plus
arm_3R 9529594..9529775 612..793 100 <- Plus
arm_3R 9529832..9529926 794..889 98   Plus

BS16246.5prime Sequence

816 bp (782 high quality bases) assembled on 2007-05-15

> BS16246.5prime
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGC
TGGAACGGATTGTGGA

BS16246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9621-PA 1509 Adgf-D-RA 1..800 17..816 4000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 76..875 17..816 4000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13704333..13704818 578..93 2430 100 Minus
3R 32079331 3R 13704110..13704281 748..577 860 100 Minus
3R 32079331 3R 13705252..13705327 92..17 380 100 Minus
3R 32079331 3R 13703986..13704054 816..748 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:12:07 has no hits.

BS16246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:19 Download gff for BS16246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9621-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:51 Download gff for BS16246.5prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..874 17..815 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:45 Download gff for BS16246.5prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..874 17..815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:45 Download gff for BS16246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13703987..13704053 749..815 100 <- Minus
3R 13704110..13704279 579..748 100 <- Minus
3R 13704333..13704818 93..578 100 <- Minus
3R 13705252..13705327 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:51 Download gff for BS16246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9529709..9529775 749..815 100 <- Minus
arm_3R 9529832..9530001 579..748 100 <- Minus
arm_3R 9530055..9530540 93..578 100 <- Minus
arm_3R 9530974..9531049 17..92 100   Minus

BS16246.complete Sequence

1541 bp assembled on 2007-05-07

GenBank Submission: FJ638106

> BS16246.complete
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGC
TGGAACGGATTGTGGAGGAATTCAAGGCCAAGCACCATGACTTCATCGGT
GTTAAGGTGATATATGCCAAGCGGAATCGCGCATCCGAGGAGGAGATGTT
GCGCCGAATCACCACTTTTAAGCAGCTGCACCATGCCAAACCGAACTTTG
TGATTGGTTTCGATCTGATTGGTCAGGAGGACACTGGAGAACCGCTGAAC
AGGTATATCAACCAACTGTCCGATCTTCCTAGCACGGCAAACTACTTCTT
CCACGCCGGCGAGACGAATTGGAATGGCCGAACGGACTGGAACATGATGG
ACGCCATTCTGCTGAATACGAAGCGGATTGGCCATGCCTTCGCCCTGCCC
AAGCATCCACAATTGTGGTCCACCATCAAGAAGCGTAACATCGCCATCGA
GGTGAATCCCATTTCCAACCAGGTCTTGGGCTTCGTCTGGGATCTGCGAA
ATCATCCGGCCAGCTTCCTGATAGCCGAGAACTTTCCCATCGTTATATCA
TCCGATGATCCGGGTGTTTGGGGAGCCAAGGGTCTCAGCTACGATTTCTA
CTACGCCTTCATGGCCTTGGCTCCGGCGGATGCGGATCTGCGCTTTCTCA
AGCAGCTGGCCTTGAACTCCATCAAGTACGCCGTTCTCACCTCGGACGAG
AGGCGGAAAATCAATCGGGTATTCCAGCGCAAGTGGCAGGAGTTTATTGC
GAATGTCTTGAATCCAAAATTCTAAAAGCTTTCTAGACCAT

BS16246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1509 CG9621-PA 1..1509 17..1525 7545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 76..1584 17..1525 7545 100 Plus
ninaB-RA 2164 CG9347-RA 2113..2164 1525..1474 260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13704333..13704818 578..93 2430 100 Minus
3R 32079331 3R 13703113..13703570 1525..1068 2290 100 Minus
3R 32079331 3R 13703872..13704054 930..748 915 100 Minus
3R 32079331 3R 13704110..13704281 748..577 860 100 Minus
3R 32079331 3R 13703627..13703763 1067..931 685 100 Minus
3R 32079331 3R 13705252..13705327 92..17 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:45:18 has no hits.

BS16246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:13 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:17 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 132..1646 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:32:30 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..1582 17..1523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:13 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 132..1646 17..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:48 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..1582 17..1523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:48 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13703627..13703763 931..1067 100 <- Minus
3R 13703872..13704053 749..930 100 <- Minus
3R 13704110..13704279 579..748 100 <- Minus
3R 13703115..13703570 1068..1523 100 <- Minus
3R 13704333..13704818 93..578 100 <- Minus
3R 13705252..13705327 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:32:30 Download gff for BS16246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9528837..9529292 1068..1523 100 <- Minus
arm_3R 9529349..9529485 931..1067 100 <- Minus
arm_3R 9529594..9529775 749..930 100 <- Minus
arm_3R 9529832..9530001 579..748 100 <- Minus
arm_3R 9530055..9530540 93..578 100 <- Minus
arm_3R 9530974..9531049 17..92 100   Minus

BS16246.pep Sequence

Translation from 16 to 1524

> BS16246.pep
MAMWFLGALVATVVLLTGSVQATDLPYETLREQIMEAERVASLGGNIWLS
SDEEKANSILMNAKRAEIAEGLKTPEKYAPAMHFFQGRQYVRQSEVFRMI
QKIPKGAFLHGHNTGMVTSRWIIQNLTTTNNLYTCRNVDGLLVFTYDQSG
CHSEVQNVCTERINAEDRGKYERQLEKHINMHGPRPEALLPNRKKIWERF
ENIFTTVDRLYKYRPTYCAYHKRMLEELCEDNIIYAEIRASLSPLYDDNN
RTLSTLEVANELERIVEEFKAKHHDFIGVKVIYAKRNRASEEEMLRRITT
FKQLHHAKPNFVIGFDLIGQEDTGEPLNRYINQLSDLPSTANYFFHAGET
NWNGRTDWNMMDAILLNTKRIGHAFALPKHPQLWSTIKKRNIAIEVNPIS
NQVLGFVWDLRNHPASFLIAENFPIVISSDDPGVWGAKGLSYDFYYAFMA
LAPADADLRFLKQLALNSIKYAVLTSDERRKINRVFQRKWQEFIANVLNP
KF*

BS16246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-PA 502 CG9621-PA 1..502 1..502 2649 100 Plus
Adgf-C-PA 506 CG9345-PA 4..501 9..498 1107 43.8 Plus
Adgf-A-PB 553 CG5992-PB 52..538 13..497 928 40.1 Plus
Adgf-A-PA 553 CG5992-PA 52..538 13..497 928 40.1 Plus
Adgf-B-PA 520 CG5998-PA 40..519 27..502 866 38.8 Plus