Clone BS16251 Report

Search the DGRC for BS16251

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG1360-RA
Protein status:BS16251.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16251.3prime Sequence

861 bp (802 high quality bases) assembled on 2007-05-15

> BS16251.3prime
ATGGTCTAGAAAGCTTCTACTTGAGGAACGCTTGGAGGCGATTCTGCTGC
GTTTTGCTGGCGTCTTTAAACGCGTTCGACTTCAGCTGGGCAGCTATTTG
CAGCAGTACGTTCTGCTTCTGGGTTTTGGACTGCGTTTTTGGTGCGGTGG
GCGCTGGCTGGGCAGGCTTCTTCTTTTTCTTCTTCGATGTCTGACTTGGG
TTTTGGGAAGCTATGCCGACTGGTTGGGACGCGTTTTTGGATGGAGCTGG
CGATTTCGAAGGCTGCTGCTGTCGCTGAGGCGCTTTTTGCTGCATTTTCA
GGCCTGCATTGATATCTTTATTCGGCGCCTGAGACTTCTTCGTTTTGGCC
TTCTTTTTGTTTTGGCCCGCTGGCGCAGGTTGTGTGACTACCATTGTCTC
CTCCGTGGCTTTTACTTTGGCGCGCTTTCGGCTCTTCTCCAGAGCCAACA
TTGTCTTGTGATGGCAAACATCGCAGTCCACGGCCATGTTACTGGCCATA
CGCTTCTTGAGCCACTTGGCCCGTTTCCTGGCCCCGCTGTTCATCTCGCC
CTTTGCCATCTTGCCCTTCACGGCTTCCAGCTTGGTGATCAGTCTCCGGT
TCTTAGCACTCTGCATCAGTTCTTGTGGCTGGAGGTGGAGCTGGTAGCGG
CCACCTGTCCACTGGTTCCCGCAGCGGGAGCACATGCGTGCGGGTCCAAA
GCTCTCCTCGGGCAACTGGACATTGTGCCGGGCCAGCTTCCTACAGGTGG
TTATGTAATAGGATTTGAGGATCCGTTCTGTGTGGGTTTGGTCGGTCAGC
TTGGAGGCACAGTTCCACAGCAAATTTACTGTTTTTTGGTCACTCATGTC
GACTGATAACT

BS16251.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 831 CG1360-RA 1..831 847..17 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 195..1026 848..17 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588504..7588972 17..485 2345 100 Plus
2R 25286936 2R 7589266..7589534 484..752 1345 100 Plus
2R 25286936 2R 7589595..7589690 753..848 480 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:04:35 has no hits.

BS16251.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:18 Download gff for BS16251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-PA 1..831 17..847 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:52 Download gff for BS16251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..1030 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:32 Download gff for BS16251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..1030 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:32 Download gff for BS16251.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7588500..7588971 13..484 99 <- Plus
2R 7589267..7589534 485..752 100 <- Plus
2R 7589595..7589702 753..860 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:52 Download gff for BS16251.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476005..3476476 13..484 99 <- Plus
arm_2R 3476772..3477039 485..752 100 <- Plus
arm_2R 3477100..3477207 753..860 95   Plus

BS16251.5prime Sequence

818 bp (762 high quality bases) assembled on 2007-05-15

> BS16251.5prime
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGC

BS16251.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 831 CG1360-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 195..997 16..818 4015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588533..7588972 818..379 2200 100 Minus
2R 25286936 2R 7589266..7589534 380..112 1345 100 Minus
2R 25286936 2R 7589595..7589690 111..16 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:06:39 has no hits.

BS16251.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:14 Download gff for BS16251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:12 Download gff for BS16251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..997 4..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:14 Download gff for BS16251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..997 4..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:14 Download gff for BS16251.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7589267..7589534 112..379 100 <- Minus
2R 7589595..7589702 4..111 95   Minus
2R 7588533..7588971 380..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:12 Download gff for BS16251.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476038..3476476 380..818 100 <- Minus
arm_2R 3476772..3477039 112..379 100 <- Minus
arm_2R 3477100..3477207 4..111 95   Minus

BS16251.complete Sequence

863 bp assembled on 2007-05-07

GenBank Submission: FJ638874

> BS16251.complete
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGCAGAATCGCCTCCAAGCGTTCCTCAAGTAGAAG
CTTTCTAGACCAT

BS16251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 831 CG1360-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 195..1026 16..847 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588504..7588972 847..379 2345 100 Minus
2R 25286936 2R 7589266..7589534 380..112 1345 100 Minus
2R 25286936 2R 7589595..7589690 111..16 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:59:23 has no hits.

BS16251.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:38 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:01 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 180..1027 4..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:10 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 196..1026 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:39 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 180..1027 4..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:28 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 196..1026 17..847 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:28 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7588504..7588971 380..847 100 <- Minus
2R 7589267..7589534 112..379 100 <- Minus
2R 7589595..7589689 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:10 Download gff for BS16251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476009..3476476 380..847 100 <- Minus
arm_2R 3476772..3477039 112..379 100 <- Minus
arm_2R 3477100..3477194 17..111 100   Minus

BS16251.pep Sequence

Translation from 16 to 846

> BS16251.pep
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLK*

BS16251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 276 CG1360-PA 1..276 1..276 1423 100 Plus