Clone Sequence Records
BS16251.3prime Sequence
861 bp (802 high quality bases) assembled on 2007-05-15
> BS16251.3prime
ATGGTCTAGAAAGCTTCTACTTGAGGAACGCTTGGAGGCGATTCTGCTGC
GTTTTGCTGGCGTCTTTAAACGCGTTCGACTTCAGCTGGGCAGCTATTTG
CAGCAGTACGTTCTGCTTCTGGGTTTTGGACTGCGTTTTTGGTGCGGTGG
GCGCTGGCTGGGCAGGCTTCTTCTTTTTCTTCTTCGATGTCTGACTTGGG
TTTTGGGAAGCTATGCCGACTGGTTGGGACGCGTTTTTGGATGGAGCTGG
CGATTTCGAAGGCTGCTGCTGTCGCTGAGGCGCTTTTTGCTGCATTTTCA
GGCCTGCATTGATATCTTTATTCGGCGCCTGAGACTTCTTCGTTTTGGCC
TTCTTTTTGTTTTGGCCCGCTGGCGCAGGTTGTGTGACTACCATTGTCTC
CTCCGTGGCTTTTACTTTGGCGCGCTTTCGGCTCTTCTCCAGAGCCAACA
TTGTCTTGTGATGGCAAACATCGCAGTCCACGGCCATGTTACTGGCCATA
CGCTTCTTGAGCCACTTGGCCCGTTTCCTGGCCCCGCTGTTCATCTCGCC
CTTTGCCATCTTGCCCTTCACGGCTTCCAGCTTGGTGATCAGTCTCCGGT
TCTTAGCACTCTGCATCAGTTCTTGTGGCTGGAGGTGGAGCTGGTAGCGG
CCACCTGTCCACTGGTTCCCGCAGCGGGAGCACATGCGTGCGGGTCCAAA
GCTCTCCTCGGGCAACTGGACATTGTGCCGGGCCAGCTTCCTACAGGTGG
TTATGTAATAGGATTTGAGGATCCGTTCTGTGTGGGTTTGGTCGGTCAGC
TTGGAGGCACAGTTCCACAGCAAATTTACTGTTTTTTGGTCACTCATGTC
GACTGATAACT
BS16251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 831 | CG1360-RA | 1..831 | 847..17 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 195..1026 | 848..17 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588504..7588972 | 17..485 | 2345 | 100 | Plus |
2R | 25286936 | 2R | 7589266..7589534 | 484..752 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 7589595..7589690 | 753..848 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:04:35 has no hits.
BS16251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:18 Download gff for
BS16251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-PA | 1..831 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:52 Download gff for
BS16251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..1030 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:32 Download gff for
BS16251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..1030 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:32 Download gff for
BS16251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7588500..7588971 | 13..484 | 99 | <- | Plus |
2R | 7589267..7589534 | 485..752 | 100 | <- | Plus |
2R | 7589595..7589702 | 753..860 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:52 Download gff for
BS16251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476005..3476476 | 13..484 | 99 | <- | Plus |
arm_2R | 3476772..3477039 | 485..752 | 100 | <- | Plus |
arm_2R | 3477100..3477207 | 753..860 | 95 | | Plus |
BS16251.5prime Sequence
818 bp (762 high quality bases) assembled on 2007-05-15
> BS16251.5prime
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGC
BS16251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 831 | CG1360-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 195..997 | 16..818 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588533..7588972 | 818..379 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 7589266..7589534 | 380..112 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 7589595..7589690 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:06:39 has no hits.
BS16251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:14 Download gff for
BS16251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:12 Download gff for
BS16251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..997 | 4..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:14 Download gff for
BS16251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..997 | 4..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:14 Download gff for
BS16251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7589267..7589534 | 112..379 | 100 | <- | Minus |
2R | 7589595..7589702 | 4..111 | 95 | | Minus |
2R | 7588533..7588971 | 380..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:12 Download gff for
BS16251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476038..3476476 | 380..818 | 100 | <- | Minus |
arm_2R | 3476772..3477039 | 112..379 | 100 | <- | Minus |
arm_2R | 3477100..3477207 | 4..111 | 95 | | Minus |
BS16251.complete Sequence
863 bp assembled on 2007-05-07
GenBank Submission: FJ638874
> BS16251.complete
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGCAGAATCGCCTCCAAGCGTTCCTCAAGTAGAAG
CTTTCTAGACCAT
BS16251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 831 | CG1360-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 195..1026 | 16..847 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588504..7588972 | 847..379 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 7589266..7589534 | 380..112 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 7589595..7589690 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:23 has no hits.
BS16251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:38 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:01 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 180..1027 | 4..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:10 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 196..1026 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:39 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 180..1027 | 4..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:28 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 196..1026 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:28 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7588504..7588971 | 380..847 | 100 | <- | Minus |
2R | 7589267..7589534 | 112..379 | 100 | <- | Minus |
2R | 7589595..7589689 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:10 Download gff for
BS16251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476009..3476476 | 380..847 | 100 | <- | Minus |
arm_2R | 3476772..3477039 | 112..379 | 100 | <- | Minus |
arm_2R | 3477100..3477194 | 17..111 | 100 | | Minus |
BS16251.pep Sequence
Translation from 16 to 846
> BS16251.pep
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLK*
BS16251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 276 | CG1360-PA | 1..276 | 1..276 | 1423 | 100 | Plus |