Clone BS16253 Report

Search the DGRC for BS16253

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptSpt-I-RA
Protein status:BS16253.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16253.3prime Sequence

919 bp (775 high quality bases) assembled on 2007-05-15

> BS16253.3prime
ATGGTCTAGAAAGCTTTTATAGGACGGAGCTGGAAACACTCTCGATGACC
TCAAACGCATTGTCTATTTCCGAACTCTCCAGCAAACGGTTGACAGCAAT
GCGAATGCTGGGACGGACTGGTTGGCGTTCCCTGTTCTGCAGGTAGGCAG
CCTGTACCACAGCCACTCCACGAGCAATGCACTTATCAGCCAGCTCTGTT
AGAAGTTTCAGTTCCTTGTCAAAGTTCTCGGCGGGCTGGGCAAGATACAA
GTGCTTCACTGGTGACACCTCATCGCCGCGCAGGGTTAGCTTGCTGAATC
GCAAAAACTTCTGGTGCAACGTCTTAGACTTTGCCTGCAGCTGCTCGAAG
ATTTGTGGTTCTCGTTCGAAACGATCCAACGCTGAAATAGCCGCCTGGGT
GAGCATGGGCGGCAGCGAGGCCGAGAAGATGTAGCCCAAGCCAGAGAGGC
GCTGGTGCTCGGCTATGAAGTGCGAGCCAACACAGAAGCCACCGACTGTT
GCCATCGAACCCTCCATGCCGGCCGATATCAGATCGACTTCATCACGATC
GACATTAAAGTGCTCCGTAACTCCGTGACCACCCTGGCCCAATGTGCCAA
AGGAGATGCTTTCGTCGATGAACAAACGCAGCTTGTACTTCTGACGCAAG
GCCACCAGGTCGGGAAGTGGGCAAATCTCGCCCGTATTCATATAGATACC
CTCGGCGACGAGGAAGCGACGTGTCTTAGCCGCCTTTTTCGGATTTTTCT
GGTCTCGTTTTTCTTGCTCAATCAGCAGACGTTCTAGATCCTCAACGTCA
TTGTGCTTAAAGAAAACGATTGTGCTTCGTGAAGCATCCAGACCCTTCTG
AAATGGCAAGTTGACAGCCTCATCCACAAAGATAAGGTCGCCACGTTTGG
CATACGCCGGAATGGCACT

BS16253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4016-PB 1407 Spt-I-RB 572..1407 852..17 4180 100 Minus
CG4016-PA 1407 Spt-I-RA 572..1407 852..17 4180 100 Minus
CG4016-PC 1407 Spt-I-RC 572..1407 852..17 4180 100 Minus
CG4016-PB 1407 Spt-I-RB 505..566 919..858 310 100 Minus
CG4016-PA 1407 Spt-I-RA 505..566 919..858 310 100 Minus
CG4016-PC 1407 Spt-I-RC 505..566 919..858 310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 604..1506 919..17 4470 99.8 Minus
Spt-I-RA 1727 CG4016-RA 562..1464 919..17 4470 99.8 Minus
Spt-I-RB 1799 CG4016-RB 634..1536 919..17 4470 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13169890..13170255 547..182 1830 100 Minus
2R 25286936 2R 13169507..13169834 875..548 1580 98.8 Minus
2R 25286936 2R 13170315..13170481 183..17 835 100 Minus
2R 25286936 2R 13169407..13169451 919..875 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:08:06 has no hits.

BS16253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:53 Download gff for BS16253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4016-PC 505..1407 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:13 Download gff for BS16253.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 634..1541 10..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:40 Download gff for BS16253.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 634..1541 10..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:40 Download gff for BS16253.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13169407..13169450 876..919 100 -> Minus
2R 13169507..13169834 548..875 99 -> Minus
2R 13169890..13170255 182..547 100 -> Minus
2R 13170317..13170486 10..181 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:13 Download gff for BS16253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056912..9056955 876..919 100 -> Minus
arm_2R 9057012..9057339 548..875 99 -> Minus
arm_2R 9057395..9057760 182..547 100 -> Minus
arm_2R 9057822..9057991 10..181 98   Minus

BS16253.5prime Sequence

910 bp (796 high quality bases) assembled on 2007-05-15

> BS16253.5prime
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCAATCGTGATGA
AATCGATCTG

BS16253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4016-PB 1407 Spt-I-RB 1..894 17..910 4420 99.7 Plus
CG4016-PA 1407 Spt-I-RA 1..894 17..910 4420 99.7 Plus
CG4016-PC 1407 Spt-I-RC 1..894 17..910 4420 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 100..993 17..910 4440 99.8 Plus
Spt-I-RA 1727 CG4016-RA 58..951 17..910 4440 99.8 Plus
Spt-I-RB 1799 CG4016-RB 130..1023 17..910 4440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13168951..13169451 65..565 2505 100 Plus
2R 25286936 2R 13169507..13169831 565..889 1625 100 Plus
2R 25286936 2R 13168841..13168888 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:33:39 has no hits.

BS16253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:37 Download gff for BS16253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4016-PC 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:50 Download gff for BS16253.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 124..1023 11..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:34 Download gff for BS16253.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 124..1023 11..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:34 Download gff for BS16253.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13168835..13168888 11..64 96 -> Plus
2R 13168951..13169450 65..564 100 -> Plus
2R 13169507..13169836 565..895 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:50 Download gff for BS16253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056340..9056393 11..64 96 -> Plus
arm_2R 9056456..9056955 65..564 100 -> Plus
arm_2R 9057012..9057341 565..895 99   Plus

BS16253.complete Sequence

1439 bp assembled on 2007-05-07

GenBank Submission: FJ638107

> BS16253.complete
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCGATCGTGATGA
AGTCGATCTGATATCGGCCGGCATGGAGGGTTCGATGGCAACAGTCGGTG
GCTTCTGTGTTGGCTCGCACTTCATAGCCGAGCACCAGCGCCTCTCTGGC
TTGGGCTACATCTTCTCGGCCTCGCTGCCGCCCATGCTCACCCAGGCGGC
TATTTCAGCGTTGGATCGTTTCGAACGAGAACCACAAATCTTCGAGCAGC
TGCAGGCAAAGTCTAAGACGTTGCACCAGAAGTTTTTGCGATTCAGCAAG
CTAACCCTGCGCGGCGATGAGGTGTCACCAGTGAAGCACTTGTATCTTGC
CCAGCCCGCCGAGAACTTTGACAAGGAACTGAAACTTCTAACAGAGCTGG
CTGATAAGTGCATTGCTCGTGGAGTGGCTGTGGTACAGGCTGCCTACCTG
CAGAACAGGGAACGCCAACCAGTCCGTCCCAGCATTCGCATTGCTGTCAA
CCGTTTGCTGGAGAGTTCGGAAATAGACAATGCGTTTGAGGTCATCGAGA
GTGTTTCCAGCTCCGTCCTATAAAAGCTTTCTAGACCAT

BS16253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1407 CG4016-PC 1..1407 17..1423 7035 100 Plus
Spt-I-RA 1407 CG4016-PA 1..1407 17..1423 7035 100 Plus
Spt-I-RB 1407 CG4016-PB 1..1407 17..1423 7035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 100..1506 17..1423 7035 100 Plus
Spt-I-RA 1727 CG4016-RA 58..1464 17..1423 7035 100 Plus
Spt-I-RB 1799 CG4016-RB 130..1536 17..1423 7035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13168951..13169451 65..565 2505 100 Plus
2R 25286936 2R 13169890..13170255 893..1258 1830 100 Plus
2R 25286936 2R 13169507..13169834 565..892 1640 100 Plus
2R 25286936 2R 13170315..13170481 1257..1423 835 100 Plus
2R 25286936 2R 13168841..13168888 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:02:38 has no hits.

BS16253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:14 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1407 17..1423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:19 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 92..1509 11..1430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:33 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 130..1534 17..1421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:14 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 92..1509 11..1430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:10 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 130..1534 17..1421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:10 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13168841..13168888 17..64 100 -> Plus
2R 13168951..13169450 65..564 100 -> Plus
2R 13169507..13169834 565..892 100 -> Plus
2R 13169890..13170255 893..1258 100 -> Plus
2R 13170317..13170479 1259..1421 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:33 Download gff for BS16253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056346..9056393 17..64 100 -> Plus
arm_2R 9056456..9056955 65..564 100 -> Plus
arm_2R 9057012..9057339 565..892 100 -> Plus
arm_2R 9057395..9057760 893..1258 100 -> Plus
arm_2R 9057822..9057984 1259..1421 100   Plus

BS16253.pep Sequence

Translation from 16 to 1422

> BS16253.pep
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVL*

BS16253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-PC 468 CG4016-PC 1..468 1..468 2382 100 Plus
Spt-I-PA 468 CG4016-PA 1..468 1..468 2382 100 Plus
Spt-I-PB 468 CG4016-PB 1..468 1..468 2382 100 Plus
lace-PB 597 CG4162-PB 215..581 96..467 408 29.6 Plus
lace-PA 597 CG4162-PA 215..581 96..467 408 29.6 Plus