Clone Sequence Records
BS16253.3prime Sequence
919 bp (775 high quality bases) assembled on 2007-05-15
> BS16253.3prime
ATGGTCTAGAAAGCTTTTATAGGACGGAGCTGGAAACACTCTCGATGACC
TCAAACGCATTGTCTATTTCCGAACTCTCCAGCAAACGGTTGACAGCAAT
GCGAATGCTGGGACGGACTGGTTGGCGTTCCCTGTTCTGCAGGTAGGCAG
CCTGTACCACAGCCACTCCACGAGCAATGCACTTATCAGCCAGCTCTGTT
AGAAGTTTCAGTTCCTTGTCAAAGTTCTCGGCGGGCTGGGCAAGATACAA
GTGCTTCACTGGTGACACCTCATCGCCGCGCAGGGTTAGCTTGCTGAATC
GCAAAAACTTCTGGTGCAACGTCTTAGACTTTGCCTGCAGCTGCTCGAAG
ATTTGTGGTTCTCGTTCGAAACGATCCAACGCTGAAATAGCCGCCTGGGT
GAGCATGGGCGGCAGCGAGGCCGAGAAGATGTAGCCCAAGCCAGAGAGGC
GCTGGTGCTCGGCTATGAAGTGCGAGCCAACACAGAAGCCACCGACTGTT
GCCATCGAACCCTCCATGCCGGCCGATATCAGATCGACTTCATCACGATC
GACATTAAAGTGCTCCGTAACTCCGTGACCACCCTGGCCCAATGTGCCAA
AGGAGATGCTTTCGTCGATGAACAAACGCAGCTTGTACTTCTGACGCAAG
GCCACCAGGTCGGGAAGTGGGCAAATCTCGCCCGTATTCATATAGATACC
CTCGGCGACGAGGAAGCGACGTGTCTTAGCCGCCTTTTTCGGATTTTTCT
GGTCTCGTTTTTCTTGCTCAATCAGCAGACGTTCTAGATCCTCAACGTCA
TTGTGCTTAAAGAAAACGATTGTGCTTCGTGAAGCATCCAGACCCTTCTG
AAATGGCAAGTTGACAGCCTCATCCACAAAGATAAGGTCGCCACGTTTGG
CATACGCCGGAATGGCACT
BS16253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4016-PB | 1407 | Spt-I-RB | 572..1407 | 852..17 | 4180 | 100 | Minus |
CG4016-PA | 1407 | Spt-I-RA | 572..1407 | 852..17 | 4180 | 100 | Minus |
CG4016-PC | 1407 | Spt-I-RC | 572..1407 | 852..17 | 4180 | 100 | Minus |
CG4016-PB | 1407 | Spt-I-RB | 505..566 | 919..858 | 310 | 100 | Minus |
CG4016-PA | 1407 | Spt-I-RA | 505..566 | 919..858 | 310 | 100 | Minus |
CG4016-PC | 1407 | Spt-I-RC | 505..566 | 919..858 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 604..1506 | 919..17 | 4470 | 99.8 | Minus |
Spt-I-RA | 1727 | CG4016-RA | 562..1464 | 919..17 | 4470 | 99.8 | Minus |
Spt-I-RB | 1799 | CG4016-RB | 634..1536 | 919..17 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13169890..13170255 | 547..182 | 1830 | 100 | Minus |
2R | 25286936 | 2R | 13169507..13169834 | 875..548 | 1580 | 98.8 | Minus |
2R | 25286936 | 2R | 13170315..13170481 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 13169407..13169451 | 919..875 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:06 has no hits.
BS16253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:53 Download gff for
BS16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4016-PC | 505..1407 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:13 Download gff for
BS16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 634..1541 | 10..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:40 Download gff for
BS16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 634..1541 | 10..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:40 Download gff for
BS16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13169407..13169450 | 876..919 | 100 | -> | Minus |
2R | 13169507..13169834 | 548..875 | 99 | -> | Minus |
2R | 13169890..13170255 | 182..547 | 100 | -> | Minus |
2R | 13170317..13170486 | 10..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:13 Download gff for
BS16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056912..9056955 | 876..919 | 100 | -> | Minus |
arm_2R | 9057012..9057339 | 548..875 | 99 | -> | Minus |
arm_2R | 9057395..9057760 | 182..547 | 100 | -> | Minus |
arm_2R | 9057822..9057991 | 10..181 | 98 | | Minus |
BS16253.5prime Sequence
910 bp (796 high quality bases) assembled on 2007-05-15
> BS16253.5prime
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCAATCGTGATGA
AATCGATCTG
BS16253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4016-PB | 1407 | Spt-I-RB | 1..894 | 17..910 | 4420 | 99.7 | Plus |
CG4016-PA | 1407 | Spt-I-RA | 1..894 | 17..910 | 4420 | 99.7 | Plus |
CG4016-PC | 1407 | Spt-I-RC | 1..894 | 17..910 | 4420 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 100..993 | 17..910 | 4440 | 99.8 | Plus |
Spt-I-RA | 1727 | CG4016-RA | 58..951 | 17..910 | 4440 | 99.8 | Plus |
Spt-I-RB | 1799 | CG4016-RB | 130..1023 | 17..910 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13168951..13169451 | 65..565 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 13169507..13169831 | 565..889 | 1625 | 100 | Plus |
2R | 25286936 | 2R | 13168841..13168888 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:33:39 has no hits.
BS16253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:37 Download gff for
BS16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4016-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:50 Download gff for
BS16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 124..1023 | 11..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:34 Download gff for
BS16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 124..1023 | 11..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:34 Download gff for
BS16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13168835..13168888 | 11..64 | 96 | -> | Plus |
2R | 13168951..13169450 | 65..564 | 100 | -> | Plus |
2R | 13169507..13169836 | 565..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:50 Download gff for
BS16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056340..9056393 | 11..64 | 96 | -> | Plus |
arm_2R | 9056456..9056955 | 65..564 | 100 | -> | Plus |
arm_2R | 9057012..9057341 | 565..895 | 99 | | Plus |
BS16253.complete Sequence
1439 bp assembled on 2007-05-07
GenBank Submission: FJ638107
> BS16253.complete
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCGATCGTGATGA
AGTCGATCTGATATCGGCCGGCATGGAGGGTTCGATGGCAACAGTCGGTG
GCTTCTGTGTTGGCTCGCACTTCATAGCCGAGCACCAGCGCCTCTCTGGC
TTGGGCTACATCTTCTCGGCCTCGCTGCCGCCCATGCTCACCCAGGCGGC
TATTTCAGCGTTGGATCGTTTCGAACGAGAACCACAAATCTTCGAGCAGC
TGCAGGCAAAGTCTAAGACGTTGCACCAGAAGTTTTTGCGATTCAGCAAG
CTAACCCTGCGCGGCGATGAGGTGTCACCAGTGAAGCACTTGTATCTTGC
CCAGCCCGCCGAGAACTTTGACAAGGAACTGAAACTTCTAACAGAGCTGG
CTGATAAGTGCATTGCTCGTGGAGTGGCTGTGGTACAGGCTGCCTACCTG
CAGAACAGGGAACGCCAACCAGTCCGTCCCAGCATTCGCATTGCTGTCAA
CCGTTTGCTGGAGAGTTCGGAAATAGACAATGCGTTTGAGGTCATCGAGA
GTGTTTCCAGCTCCGTCCTATAAAAGCTTTCTAGACCAT
BS16253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1407 | CG4016-PC | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Spt-I-RA | 1407 | CG4016-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Spt-I-RB | 1407 | CG4016-PB | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 100..1506 | 17..1423 | 7035 | 100 | Plus |
Spt-I-RA | 1727 | CG4016-RA | 58..1464 | 17..1423 | 7035 | 100 | Plus |
Spt-I-RB | 1799 | CG4016-RB | 130..1536 | 17..1423 | 7035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13168951..13169451 | 65..565 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 13169890..13170255 | 893..1258 | 1830 | 100 | Plus |
2R | 25286936 | 2R | 13169507..13169834 | 565..892 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 13170315..13170481 | 1257..1423 | 835 | 100 | Plus |
2R | 25286936 | 2R | 13168841..13168888 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:38 has no hits.
BS16253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:14 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 1..1407 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:19 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 92..1509 | 11..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:33 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 130..1534 | 17..1421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:14 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 92..1509 | 11..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:10 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 130..1534 | 17..1421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:10 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13168841..13168888 | 17..64 | 100 | -> | Plus |
2R | 13168951..13169450 | 65..564 | 100 | -> | Plus |
2R | 13169507..13169834 | 565..892 | 100 | -> | Plus |
2R | 13169890..13170255 | 893..1258 | 100 | -> | Plus |
2R | 13170317..13170479 | 1259..1421 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:33 Download gff for
BS16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056346..9056393 | 17..64 | 100 | -> | Plus |
arm_2R | 9056456..9056955 | 65..564 | 100 | -> | Plus |
arm_2R | 9057012..9057339 | 565..892 | 100 | -> | Plus |
arm_2R | 9057395..9057760 | 893..1258 | 100 | -> | Plus |
arm_2R | 9057822..9057984 | 1259..1421 | 100 | | Plus |
BS16253.pep Sequence
Translation from 16 to 1422
> BS16253.pep
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVL*
BS16253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-PC | 468 | CG4016-PC | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PA | 468 | CG4016-PA | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PB | 468 | CG4016-PB | 1..468 | 1..468 | 2382 | 100 | Plus |
lace-PB | 597 | CG4162-PB | 215..581 | 96..467 | 408 | 29.6 | Plus |
lace-PA | 597 | CG4162-PA | 215..581 | 96..467 | 408 | 29.6 | Plus |