Clone BS16255 Report

Search the DGRC for BS16255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptTgi-RB
Protein status:BS16255.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16255.3prime Sequence

902 bp (823 high quality bases) assembled on 2007-05-15

> BS16255.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGTGCCCGCCCTGCAGCTTCTTCCAA
GTTTCGCCCAGCGCCTTGGCAAAGTGGTCGTCCACCGAGGCTTCAGTCTT
GGTGAATATCGAGATATTCGTGGACGAGGTGGGCGAAGCGGGCGGCGTCT
GCGTCGAGGAGGCAGCCACGGCCGCCAGTCCCGGTTCAGCCTTCACCCGA
ATGATGGCCGGCATGCTGGGCGTGGGCGTGGGAATCTGCGACGGCGTCGG
ATTCGGAGTTGGTGTCGGTGTCAAAGTCGGCGCCACAACGGTGGTTCCGG
CTATTCCGTAAGCCGGCGGTGGAGGCGGTGGTGTGTTGTATCTCGGCGGC
GTGTGGTGTGGCGTGTCCAGGATCCGCCTGCCCGCCACCGCTGCCTCCAT
CACCTGGCTGACGGCCGTGGGTAGCGCTGGTGCCGATCCCGTGGCCGAAG
GTGGCGGCGATGGCGGCGTTTGGGTGCGATGCAGTGCCAGCGACAGGGGA
AGCGGTTCCTCCTGCGGCGGCGGCAGTTCCGGCTGCAGCGATTCGGGCTC
CAGAATGACCCATCCCGACTTGGCCAGCGGCGAGCGTTGCTGCTGGTAGT
GCTGCGATGCCGCTGTGCTGGTTGATGAAGGCAGTCCGTAGGCCAGTGGC
GAAACCTGCTGCTTAGGTGTACCACTTGGCGAGGGCGTGGGTGTTGGCGT
AGGCGTCGGTGACTTCTTGGCGAACAGGGCAGCATAGTTCTCGCCCAGTG
AGCGTCGGAAGTGCTCGTCAATGTCGCACATCGCCATATCTGTAGAGTGG
GCCTGCTCCGGTGGTTCTCGCTTGGGTGGAGCCTGGGTAATGACGCTGGG
TCGACTGTTGGCCGCGTAGTTGGTCCCAGGCAAGGGTTCGCGATAGGGTG
GC

BS16255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10741-PB 1149 CG10741-RB 264..1149 902..17 4430 100 Minus
CG10741-PA 1608 CG10741-RA 723..1608 902..17 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RA 2045 CG10741-RA 723..1609 902..16 4435 100 Minus
Tgi-RB 1904 CG10741-RB 582..1468 902..16 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13502056 792..16 3885 100 Minus
3L 28110227 3L 13501102..13501214 902..790 565 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:00:39 has no hits.

BS16255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:05 Download gff for BS16255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-PA 723..1608 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:58 Download gff for BS16255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 582..1468 16..902 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:06 Download gff for BS16255.3prime
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 582..1468 16..902 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:06 Download gff for BS16255.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13501102..13501214 790..902 100 -> Minus
3L 13501283..13502056 16..789 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:58 Download gff for BS16255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13494202..13494314 790..902 100 -> Minus
arm_3L 13494383..13495156 16..789 100   Minus

BS16255.5prime Sequence

855 bp (801 high quality bases) assembled on 2007-05-15

> BS16255.5prime
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAACGCCGCCATCGCCGCCACCTTCGGCCACGGGATCGGC
ACCAGCGCTACCCACGGCCGTCAGCCAGGTGATGGAGGCAGCGGTGGCGG
GCAGGCGGATCCTGGACACGCCACACCACACGCCGCCGAGATACAACACA
CCACC

BS16255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10741-PB 1149 CG10741-RB 1..839 17..855 4195 100 Plus
CG10741-PA 1608 CG10741-RA 520..1298 77..855 3895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1904 CG10741-RB 318..1157 16..855 4200 100 Plus
Tgi-RA 2045 CG10741-RA 520..1298 77..855 3895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13501745 390..855 2330 100 Plus
3L 28110227 3L 13500899..13501214 77..392 1580 100 Plus
3L 28110227 3L 13487669..13487730 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:34:03 has no hits.

BS16255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:03 Download gff for BS16255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-PB 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:09 Download gff for BS16255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 313..1157 7..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:13 Download gff for BS16255.5prime
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 313..1157 7..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:13 Download gff for BS16255.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13487664..13487730 7..77 94 -> Plus
3L 13500900..13501214 78..392 100 -> Plus
3L 13501283..13501745 393..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:09 Download gff for BS16255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13480764..13480830 7..77 94 -> Plus
arm_3L 13494000..13494314 78..392 100 -> Plus
arm_3L 13494383..13494845 393..855 100   Plus

BS16255.complete Sequence

1181 bp assembled on 2007-05-07

GenBank Submission: FJ638108

> BS16255.complete
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAACGCCGCCATCGCCGCCACCTTCGGCCACGGGATCGGC
ACCAGCGCTACCCACGGCCGTCAGCCAGGTGATGGAGGCAGCGGTGGCGG
GCAGGCGGATCCTGGACACGCCACACCACACGCCGCCGAGATACAACACA
CCACCGCCTCCACCGCCGGCTTACGGAATAGCCGGAACCACCGTTGTGGC
GCCGACTTTGACACCGACACCAACTCCGAATCCGACGCCGTCGCAGATTC
CCACGCCCACGCCCAGCATGCCGGCCATCATTCGGGTGAAGGCTGAACCG
GGACTGGCGGCCGTGGCTGCCTCCTCGACGCAGACGCCGCCCGCTTCGCC
CACCTCGTCCACGAATATCTCGATATTCACCAAGACTGAAGCCTCGGTGG
ACGACCACTTTGCCAAGGCGCTGGGCGAAACTTGGAAGAAGCTGCAGGGC
GGGCACAAGGAGTAGAAGCTTTCTAGACCAT

BS16255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1149 CG10741-PB 1..1149 17..1165 5745 100 Plus
Tgi-RA 1608 CG10741-PA 520..1608 77..1165 5445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1904 CG10741-RB 318..1468 16..1166 5755 100 Plus
Tgi-RA 2045 CG10741-RA 520..1609 77..1166 5450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13502056 390..1166 3885 100 Plus
3L 28110227 3L 13500899..13501214 77..392 1580 100 Plus
3L 28110227 3L 13487669..13487730 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:43:26 has no hits.

BS16255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:15 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:03 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 312..1460 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:49 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 319..1467 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:16 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 306..1461 7..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:58 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 319..1467 17..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:58 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13487670..13487730 17..77 100 -> Plus
3L 13500900..13501214 78..392 100 -> Plus
3L 13501283..13502055 393..1165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:49 Download gff for BS16255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13480770..13480830 17..77 100 -> Plus
arm_3L 13494000..13494314 78..392 100 -> Plus
arm_3L 13494383..13495155 393..1165 100   Plus

BS16255.pep Sequence

Translation from 16 to 1164

> BS16255.pep
METALDVLSRAATMVQNNPSEMRATSKVLTTTKWRRERRQRSAGYQPHEA
GNSERERERERDREDRDMDSPIDMSVTTGALKQRASPPPPYREPLPGTNY
AANSRPSVITQAPPKREPPEQAHSTDMAMCDIDEHFRRSLGENYAALFAK
KSPTPTPTPTPSPSGTPKQQVSPLAYGLPSSTSTAASQHYQQQRSPLAKS
GWVILEPESLQPELPPPQEEPLPLSLALHRTQTPPSPPPSATGSAPALPT
AVSQVMEAAVAGRRILDTPHHTPPRYNTPPPPPPAYGIAGTTVVAPTLTP
TPTPNPTPSQIPTPTPSMPAIIRVKAEPGLAAVAASSTQTPPASPTSSTN
ISIFTKTEASVDDHFAKALGETWKKLQGGHKE*

BS16255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-PB 382 CG10741-PB 1..382 1..382 2011 100 Plus
Tgi-PA 535 CG10741-PA 173..535 20..382 1919 100 Plus
CG15021-PA 420 CG15021-PA 69..260 79..319 165 27.7 Plus
Jarid2-PD 2351 CG3654-PD 795..1114 53..357 161 26.4 Plus
CG15021-PA 420 CG15021-PA 57..206 155..319 159 32.4 Plus
CG15021-PA 420 CG15021-PA 151..386 87..349 153 26.1 Plus
CG15023-PC 168 CG15023-PC 56..151 207..316 148 35.1 Plus