Clone Sequence Records
BS16258.3prime Sequence
844 bp (822 high quality bases) assembled on 2007-05-15
> BS16258.3prime
ATGGTCTAGAAAGCTTTTAGTTGCCAGCAACGTTTTGGACTTCACTTGAA
CTGATTATCTCGTAATCTTTACTCGAGCTCTCCGAATCCGATCCCGAGTT
GCGTGGCGTTCCAGCTTTGGAATCCTTGGGCTGCGCCTTCGTTTCTTCTT
CATCCACATCGTCTTCCTCGTAGTCATCGGCACCCACTTTGCGACGTTTG
CGGATCTCCATGTCGGTGTCATGTTCTTTGATGAGCTCGATTTTCTCTGG
TTCAAGCGTGGAAACCTCAGCATCCACATCACCGTCAGCGTCTCCATCCG
CATCCACGGCTGTGTCCTCGGCATCGCTTTCTTTTTCCTTCTTCTTGTCC
TTCGATTTCGATTTCTTGTCGGTCTTGGCGGACGAATTATTTGGGTCACT
GTTATAGTTGCTCTCATATAGTGGCCAGAAGGAGGCGAAGAAGCTCACAT
CCTCAGTCAGGTTGGGGAAGATCCAGAAGTGCAACTTGCCGCCGGTTAAT
GCCCACACGATGATGAACACAATTAGACGTACAATTGTCAGAGCCAGGAT
GAAAACAAGGAAGCCGGCAGCCGCAATGGACAAGTAGTAGACACCCTTGC
GTAGCAGTGGAGGCCACAGAGGGAATAGGCAAATGCCAACGGCGCCAAGT
AGCAGGATGAAGCCGAATATCCAGTAGTGGAGCGGTATGGGATCGTAGAT
CCAGACGTATGCCTCGGAGCCGTCCACGAAGATCTGCTCAGGATGCATGT
CCAGGCGGATCTTGCGCTTTTTCTTCTCCTTTTTCTCCTTCTCTTTTTCG
TTGCCAGACGCACCTCCGTCTCCTTGGGCATTTATCGCTTCCGG
BS16258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4758-PA | 1248 | Trp1-RA | 438..1248 | 827..17 | 4055 | 100 | Minus |
CG4758-PB | 1287 | Trp1-RB | 477..1287 | 827..17 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RB | 2093 | CG4758-RB | 589..1416 | 844..17 | 4080 | 99.6 | Minus |
Trp1-RA | 2045 | CG4758-RA | 541..1368 | 844..17 | 4080 | 99.6 | Minus |
Trp1-RC | 1532 | CG4758-RC | 589..1322 | 844..111 | 3610 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10011133..10011552 | 832..413 | 2085 | 99.8 | Minus |
2L | 23513712 | 2L | 10011605..10011908 | 414..111 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 10012399..10012493 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 6452..6494 | 369..328 | 113 | 76.7 | Minus |
BS16258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:49 Download gff for
BS16258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4758-PB | 460..1287 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:04 Download gff for
BS16258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 541..1368 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:49 Download gff for
BS16258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 541..1368 | 17..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:49 Download gff for
BS16258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10011121..10011552 | 413..844 | 99 | -> | Minus |
2L | 10011607..10011908 | 111..412 | 100 | -> | Minus |
2L | 10012400..10012493 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:04 Download gff for
BS16258.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10011121..10011552 | 413..844 | 99 | -> | Minus |
arm_2L | 10011607..10011908 | 111..412 | 100 | -> | Minus |
arm_2L | 10012400..10012493 | 17..110 | 100 | | Minus |
BS16258.5prime Sequence
887 bp (851 high quality bases) assembled on 2007-05-15
> BS16258.5prime
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCCACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTTCTGGCACTATATGAGAGCAACTATAACAGTGACC
BS16258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4758-PA | 1248 | Trp1-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
CG4758-PB | 1287 | Trp1-RB | 76..875 | 53..852 | 3975 | 99.8 | Plus |
CG4758-PA | 1248 | Trp1-RA | 842..871 | 858..887 | 150 | 100 | Plus |
CG4758-PB | 1287 | Trp1-RB | 881..910 | 858..887 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RD | 1484 | CG4758-RD | 121..991 | 17..887 | 4295 | 99.7 | Plus |
Trp1-RA | 2045 | CG4758-RA | 121..991 | 17..887 | 4295 | 99.7 | Plus |
Trp1-RC | 1532 | CG4758-RC | 205..1039 | 53..887 | 4115 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10010737..10011552 | 53..868 | 4005 | 99.4 | Plus |
2L | 23513712 | 2L | 10009501..10009537 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:56:18 has no hits.
BS16258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:33 Download gff for
BS16258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4758-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:09 Download gff for
BS16258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..991 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:04 Download gff for
BS16258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..991 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:04 Download gff for
BS16258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
2L | 10010737..10011552 | 53..868 | 99 | -> | Plus |
2L | 10011607..10011625 | 869..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:09 Download gff for
BS16258.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
arm_2L | 10010737..10011552 | 53..868 | 99 | -> | Plus |
arm_2L | 10011607..10011625 | 869..887 | 100 | | Plus |
BS16258.complete Sequence
1280 bp assembled on 2007-05-07
GenBank Submission: FJ638109
> BS16258.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTC
CGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAG
AAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGT
GATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCAT
CAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTG
CCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAG
CCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGA
GAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACG
TTGCTGGCAACTAAAAGCTTTCTAGACCAT
BS16258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RA | 1248 | CG4758-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Trp1-RB | 1287 | CG4758-PB | 76..1287 | 53..1264 | 6060 | 100 | Plus |
Trp1-RD | 1158 | CG4758-PD | 1..1154 | 17..1170 | 5770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RA | 2045 | CG4758-RA | 121..1368 | 17..1264 | 6240 | 100 | Plus |
Trp1-RB | 2093 | CG4758-RB | 205..1416 | 53..1264 | 6060 | 100 | Plus |
Trp1-RD | 1484 | CG4758-RD | 121..1274 | 17..1170 | 5770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10010737..10011552 | 53..868 | 4080 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 867..1170 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10012493 | 1170..1264 | 475 | 100 | Plus |
2L | 23513712 | 2L | 10009501..10009537 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 6452..6494 | 912..953 | 113 | 76.7 | Plus |
BS16258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:17 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 1..1248 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:22 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 116..1363 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:51 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..1366 | 17..1262 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:17 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 116..1363 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:41 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..1366 | 17..1262 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:41 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10011607..10011908 | 869..1170 | 100 | -> | Plus |
2L | 10012400..10012491 | 1171..1262 | 100 | | Plus |
2L | 10010737..10011552 | 53..868 | 100 | -> | Plus |
2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:51 Download gff for
BS16258.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
arm_2L | 10010737..10011552 | 53..868 | 100 | -> | Plus |
arm_2L | 10011607..10011908 | 869..1170 | 100 | -> | Plus |
arm_2L | 10012400..10012491 | 1171..1262 | 100 | | Plus |
BS16258.pep Sequence
Translation from 16 to 1263
> BS16258.pep
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGN*
BS16258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-PA | 415 | CG4758-PA | 1..415 | 1..415 | 2161 | 100 | Plus |
Trp1-PB | 428 | CG4758-PB | 26..428 | 13..415 | 2102 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 1..385 | 1..385 | 2014 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 26..398 | 13..385 | 1955 | 100 | Plus |