Clone BS16258 Report

Search the DGRC for BS16258

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptTrp1-RA
Protein status:BS16258.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16258.3prime Sequence

844 bp (822 high quality bases) assembled on 2007-05-15

> BS16258.3prime
ATGGTCTAGAAAGCTTTTAGTTGCCAGCAACGTTTTGGACTTCACTTGAA
CTGATTATCTCGTAATCTTTACTCGAGCTCTCCGAATCCGATCCCGAGTT
GCGTGGCGTTCCAGCTTTGGAATCCTTGGGCTGCGCCTTCGTTTCTTCTT
CATCCACATCGTCTTCCTCGTAGTCATCGGCACCCACTTTGCGACGTTTG
CGGATCTCCATGTCGGTGTCATGTTCTTTGATGAGCTCGATTTTCTCTGG
TTCAAGCGTGGAAACCTCAGCATCCACATCACCGTCAGCGTCTCCATCCG
CATCCACGGCTGTGTCCTCGGCATCGCTTTCTTTTTCCTTCTTCTTGTCC
TTCGATTTCGATTTCTTGTCGGTCTTGGCGGACGAATTATTTGGGTCACT
GTTATAGTTGCTCTCATATAGTGGCCAGAAGGAGGCGAAGAAGCTCACAT
CCTCAGTCAGGTTGGGGAAGATCCAGAAGTGCAACTTGCCGCCGGTTAAT
GCCCACACGATGATGAACACAATTAGACGTACAATTGTCAGAGCCAGGAT
GAAAACAAGGAAGCCGGCAGCCGCAATGGACAAGTAGTAGACACCCTTGC
GTAGCAGTGGAGGCCACAGAGGGAATAGGCAAATGCCAACGGCGCCAAGT
AGCAGGATGAAGCCGAATATCCAGTAGTGGAGCGGTATGGGATCGTAGAT
CCAGACGTATGCCTCGGAGCCGTCCACGAAGATCTGCTCAGGATGCATGT
CCAGGCGGATCTTGCGCTTTTTCTTCTCCTTTTTCTCCTTCTCTTTTTCG
TTGCCAGACGCACCTCCGTCTCCTTGGGCATTTATCGCTTCCGG

BS16258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4758-PA 1248 Trp1-RA 438..1248 827..17 4055 100 Minus
CG4758-PB 1287 Trp1-RB 477..1287 827..17 4055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RB 2093 CG4758-RB 589..1416 844..17 4080 99.6 Minus
Trp1-RA 2045 CG4758-RA 541..1368 844..17 4080 99.6 Minus
Trp1-RC 1532 CG4758-RC 589..1322 844..111 3610 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10011133..10011552 832..413 2085 99.8 Minus
2L 23513712 2L 10011605..10011908 414..111 1520 100 Minus
2L 23513712 2L 10012399..10012493 111..17 475 100 Minus
Blast to na_te.dros performed 2015-02-11 02:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6452..6494 369..328 113 76.7 Minus

BS16258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:49 Download gff for BS16258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4758-PB 460..1287 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:04 Download gff for BS16258.3prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 541..1368 17..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:49 Download gff for BS16258.3prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 541..1368 17..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:49 Download gff for BS16258.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10011121..10011552 413..844 99 -> Minus
2L 10011607..10011908 111..412 100 -> Minus
2L 10012400..10012493 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:04 Download gff for BS16258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10011121..10011552 413..844 99 -> Minus
arm_2L 10011607..10011908 111..412 100 -> Minus
arm_2L 10012400..10012493 17..110 100   Minus

BS16258.5prime Sequence

887 bp (851 high quality bases) assembled on 2007-05-15

> BS16258.5prime
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCCACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTTCTGGCACTATATGAGAGCAACTATAACAGTGACC

BS16258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4758-PA 1248 Trp1-RA 1..836 17..852 4155 99.8 Plus
CG4758-PB 1287 Trp1-RB 76..875 53..852 3975 99.8 Plus
CG4758-PA 1248 Trp1-RA 842..871 858..887 150 100 Plus
CG4758-PB 1287 Trp1-RB 881..910 858..887 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RD 1484 CG4758-RD 121..991 17..887 4295 99.7 Plus
Trp1-RA 2045 CG4758-RA 121..991 17..887 4295 99.7 Plus
Trp1-RC 1532 CG4758-RC 205..1039 53..887 4115 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011552 53..868 4005 99.4 Plus
2L 23513712 2L 10009501..10009537 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:56:18 has no hits.

BS16258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:33 Download gff for BS16258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4758-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:09 Download gff for BS16258.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..991 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:04 Download gff for BS16258.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..991 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:04 Download gff for BS16258.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10009501..10009536 17..52 100 -> Plus
2L 10010737..10011552 53..868 99 -> Plus
2L 10011607..10011625 869..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:09 Download gff for BS16258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009501..10009536 17..52 100 -> Plus
arm_2L 10010737..10011552 53..868 99 -> Plus
arm_2L 10011607..10011625 869..887 100   Plus

BS16258.complete Sequence

1280 bp assembled on 2007-05-07

GenBank Submission: FJ638109

> BS16258.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTC
CGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAG
AAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGT
GATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCAT
CAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTG
CCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAG
CCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGA
GAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACG
TTGCTGGCAACTAAAAGCTTTCTAGACCAT

BS16258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RA 1248 CG4758-PA 1..1248 17..1264 6240 100 Plus
Trp1-RB 1287 CG4758-PB 76..1287 53..1264 6060 100 Plus
Trp1-RD 1158 CG4758-PD 1..1154 17..1170 5770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RA 2045 CG4758-RA 121..1368 17..1264 6240 100 Plus
Trp1-RB 2093 CG4758-RB 205..1416 53..1264 6060 100 Plus
Trp1-RD 1484 CG4758-RD 121..1274 17..1170 5770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011552 53..868 4080 100 Plus
2L 23513712 2L 10011605..10011908 867..1170 1520 100 Plus
2L 23513712 2L 10012399..10012493 1170..1264 475 100 Plus
2L 23513712 2L 10009501..10009537 17..53 185 100 Plus
Blast to na_te.dros performed 2014-11-27 14:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6452..6494 912..953 113 76.7 Plus

BS16258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:17 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 17..1264 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:22 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 116..1363 17..1264 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:51 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..1366 17..1262 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:17 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 116..1363 17..1264 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:41 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..1366 17..1262 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:41 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10011607..10011908 869..1170 100 -> Plus
2L 10012400..10012491 1171..1262 100   Plus
2L 10010737..10011552 53..868 100 -> Plus
2L 10009501..10009536 17..52 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:51 Download gff for BS16258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009501..10009536 17..52 100 -> Plus
arm_2L 10010737..10011552 53..868 100 -> Plus
arm_2L 10011607..10011908 869..1170 100 -> Plus
arm_2L 10012400..10012491 1171..1262 100   Plus

BS16258.pep Sequence

Translation from 16 to 1263

> BS16258.pep
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGN*

BS16258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PA 415 CG4758-PA 1..415 1..415 2161 100 Plus
Trp1-PB 428 CG4758-PB 26..428 13..415 2102 100 Plus
Trp1-PD 385 CG4758-PD 1..385 1..385 2014 100 Plus
Trp1-PC 398 CG4758-PC 26..398 13..385 1955 100 Plus