Clone BS16262 Report

Search the DGRC for BS16262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS16262.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS16262.3prime Sequence

345 bp (345 high quality bases) assembled on 2007-05-15

> BS16262.3prime
ATGGTCTAGAAAGCTTTTAGTCGAGATTATGATTGCATTTCCCGCGAGAG
GAAGTGAGTGCAAATCGGAAATTAGCCCCATCCACACTATTCACATTTAT
GTACATTGAACTTTTAGCCAAATCACAGCCGGTAAAATGGCTCAATTCAA
ACGAGGCAAACAACAAAATCATTTTAGCCCACAAACCATTTCTTTGCTGT
TTGTAAACAGCTGAAAAACGCTGGAAATTGTTTATGGCTGTTACTGTTCT
CGAACATTTCATCGGTTGGCCATAAAAGGGCATGACAAATGAATGAAATT
CGTTGGCAATTTTCGTTTTCAGTGCCCTCATGTCGACTGATAACT

BS16262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30477-PA 315 CG30477-RA 1..315 331..17 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 15:58:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14642724..14643039 331..16 1580 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:58:09 has no hits.

BS16262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:37 Download gff for BS16262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30477-PA 1..315 17..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:17 Download gff for BS16262.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643041 11..331 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:17 Download gff for BS16262.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643041 11..331 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:09 Download gff for BS16262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530546 11..331 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:09 Download gff for BS16262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530546 11..331 99   Minus

BS16262.5prime Sequence

345 bp (345 high quality bases) assembled on 2007-05-15

> BS16262.5prime
GAAGTTATCAGTCGACATGAGGGCACTGAAAACGAAAATTGCCAACGAAT
TTCATTCATTTGTCATGCCCTTTTATGGCCAACCGATGAAATGTTCGAGA
ACAGTAACAGCCATAAACAATTTCCAGCGTTTTTCAGCTGTTTACAAACA
GCAAAGAAATGGTTTGTGGGCTAAAATGATTTTGTTGTTTGCCTCGTTTG
AATTGAGCCATTTTACCGGCTGTGATTTGGCTAAAAGTTCAATGTACATA
AATGTGAATAGTGTGGATGGGGCTAATTTCCGATTTGCACTCACTTCCTC
TCGCGGGAAATGCAATCATAATCTCGACTAAAAGCTTTCTAGACC

BS16262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30477-PA 315 CG30477-RA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 16:29:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14642724..14643039 17..332 1580 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:29:05 has no hits.

BS16262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:32 Download gff for BS16262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30477-PA 1..315 17..331 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:29 Download gff for BS16262.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643041 17..337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:29 Download gff for BS16262.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643041 17..337 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:18 Download gff for BS16262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530546 17..337 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:18 Download gff for BS16262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530546 17..337 99   Plus

BS16262.complete Sequence

347 bp assembled on 2007-05-07

> BS16262.complete
GAAGTTATCAGTCGACATGAGGGCACTGAAAACGAAAATTGCCAACGAAT
TTCATTCATTTGTCATGCCCTTTTATGGCCAACCGATGAAATGTTCGAGA
ACAGTAACAGCCATAAACAATTTCCAGCGTTTTTCAGCTGTTTACAAACA
GCAAAGAAATGGTTTGTGGGCTAAAATGATTTTGTTGTTTGCCTCGTTTG
AATTGAGCCATTTTACCGGCTGTGATTTGGCTAAAAGTTCAATGTACATA
AATGTGAATAGTGTGGATGGGGCTAATTTCCGATTTGCACTCACTTCCTC
TCGCGGGAAATGCAATCATAATCTCGACTAAAAGCTTTCTAGACCAT

BS16262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:55:26 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:55:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14642724..14643039 17..332 1580 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:55:25 has no hits.

BS16262.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 13:45:04 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:15 Download gff for BS16262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643036 17..329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:15 Download gff for BS16262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14642724..14643036 17..329 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:58 Download gff for BS16262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530541 17..329 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:58 Download gff for BS16262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10530229..10530541 17..329 100   Plus

BS16262.pep Sequence

Translation from 16 to 330

> BS16262.pep
MRALKTKIANEFHSFVMPFYGQPMKCSRTVTAINNFQRFSAVYKQQRNGL
WAKMILLFASFELSHFTGCDLAKSSMYINVNSVDGANFRFALTSSRGKCN
HNLD*
Sequence BS16262.pep has no blast hits.