Clone BS16268 Report

Search the DGRC for BS16268

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG11089-RA
Protein status:BS16268.pep: full length peptide match
Sequenced Size:1805

Clone Sequence Records

BS16268.complete Sequence

1805 bp assembled on 2009-12-07

GenBank Submission: KX801320

> BS16268.complete
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTC
CTCAATGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTG
GCAGTTGGTTAGGGAACTGAAGAAGGCTCTGCAGCTGCCGGCGGCCACCA
GCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAAT
CCGGCACAGGCCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGAC
ACCTCTGGCAACGGCCTATGCTCGTGCCCGTGGTGCCGACCGCATGAGCT
CCTTCGGCGACTTTGTGGCCCTCTCTGATGTGTGCGATGTTGTGACGGCC
AGGATAATCTCGCGAGAGGTGTCCGATGGTATTATTGCCGCGGGTTATGA
GCCCGAAGCTCTGGAGATCCTGAAGAAAAAGAAGAATGGCGGCTACTGTA
TACTGCAGATGGACCCCAACTACGAACCCTCCGCGGTGGAGCGCAAGACT
ATTTTTGGTCTGACGCTGGAGCAGAAGCGCAACGATGCTGTCATCGACGC
CTCGCTCTTTTCCAATGTGGTGAGCAAGCGTGGTCCTCTGCCCGAGGTGG
CTGTGCGGGATCTGATCGTGGCCACCATTGCCTTGAAGTACACTCAGAGC
AACTCCGTGTGCTACGCCCGCGATGGCCAGGTCGTGGGCATCGGTGCCGG
CCAGCAGTCGAGGATTCACTGCACCCGCTTGGCGGGCGAGAAGGCGGACA
ACTGGTGGCTGCGTCAGCATCCCAGCGTGGCCGGCATGAAGTTCAAGGCT
GGTGTGAAGCGGGCGGAGATCTCTAATGCAATCGACAATTACGTAAACGG
AACTGTGGGCAAGGACATGCCTTTGTCGCAGTTCGAGGGAATGTTCGATA
AGGCACCAGCCCAACTGACCAGTGAGCAAAAAGTGGAATGGTTAAAGCAG
CTGAGTGGCGTGGCCTTGGGATCCGATGCCTTCTTCCCCTTCCGTGATAA
TATCGATCGCGCTAGCCTGAGCGGCGTCTCCTACATAGCCAGTCCCGCAG
GATCCACCAATGATGCTGGTGTCATTGCCGCCTGCGATGAGCACGGTATC
ATCATGGCCCATACCAATCTGCGATTGTTCCACCATTAGAAGCTTTCTAG
ACCAT

BS16268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RB 1773 CG11089-PB 1..1773 17..1789 8850 99.9 Plus
CG11089-RA 1773 CG11089-PA 1..1773 17..1789 8850 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RB 2195 CG11089-RB 57..1830 16..1789 8855 99.9 Plus
CG11089-RA 2272 CG11089-RA 134..1907 16..1789 8855 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24879176..24880249 35..1108 5355 99.9 Plus
3R 32079331 3R 24880311..24880748 1107..1544 2190 100 Plus
3R 32079331 3R 24880806..24880932 1543..1669 635 100 Plus
3R 32079331 3R 24880993..24881113 1669..1789 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:06:58 has no hits.

BS16268.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:47 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 112..1884 17..1789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:18 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RE 1954..3726 17..1789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:23 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 112..1884 17..1789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:19 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 135..1907 17..1789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:19 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24879101..24879119 17..35 100 -> Plus
3R 24879177..24880249 36..1108 99 -> Plus
3R 24880313..24880746 1109..1542 100 -> Plus
3R 24880806..24880932 1543..1669 100 -> Plus
3R 24880994..24881113 1670..1789 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:18 Download gff for BS16268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20704823..20704841 17..35 100 -> Plus
arm_3R 20704899..20705971 36..1108 99 -> Plus
arm_3R 20706035..20706468 1109..1542 100 -> Plus
arm_3R 20706528..20706654 1543..1669 100 -> Plus
arm_3R 20706716..20706835 1670..1789 100   Plus

BS16268.3prime Sequence

850 bp (748 high quality bases) assembled on 2007-05-15

> BS16268.3prime
ATGGTCTAGAAAGCTTCTAATGGTGGAACAATCGCAGATTGGTATGGGCC
ATGATGATACCGTGCTCATCGCAGGCGGCAATGACACCAGCATCATTGGT
GGATCCTGCGGGACTGGCTATGTAGGAGACGCCGCTCAGGCTAGCGCGAT
CGATATTATCACGGAAGGGGAAGAAGGCATCGGATCCCAAGGCCACGCCA
CTCAGCTGCTTTAACCATTCCACTTTTTGCTCACTGGTCAGTTGGGCTGG
TGCCTTATCGAACATTCCCTCGAACTGCGACAAAGGCATGTCCTTGCCCA
CAGTTCCGTTTACGTAATTGTCGATTGCATTAGAGATCTCCGCCCGCTTC
ACACCAGCCTTGAACTTCATGCCGGCCACGCTGGGATGCTGACGCAGCCA
CCAGTTGTCCGCCTTCTCGCCCGCCAAGCGGGTGCAGTGAATCCTCGACT
GCTGGCCGGCACCGATGCCCACGACCTGGCCATCGCGGGCGTAGCACACG
GAGTTGCTCTGAGTGTACTTCAAGGCAATGGTGGCCACGATCAGATCCCG
CACAGCCACCTCGGGCAGAGGACCACGCTTGCTCACCACATTGGAAAAGA
GCGAGGCGTCGATGACAGCATCGTTGCGCTTCTGCTCCAGCGTCAGACCA
AAAATAGTCTTGCGCTCCACCGCGGAGGGTTCGTAGTTGGGGTCCATCTG
CAGTATACAGTAGCCGCCATTCTTCTTTTTCTTCAGGATCTCCAGAGCTT
CGGGCTCATAACCCGCGGCAATAATACCATCGGACACCTCTCGCGAGATT
ATCCTGGCCGTCACAACATCGCACACATCAGAGAGGGCCACAAAGTCGCC

BS16268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PA 1773 CG11089-RA 940..1773 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RB 2195 CG11089-RB 997..1830 850..17 4170 100 Minus
CG11089-RA 2272 CG11089-RA 1074..1907 850..17 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24880311..24880748 699..262 2190 100 Minus
3R 32079331 3R 24880097..24880249 850..698 765 100 Minus
3R 32079331 3R 24880806..24880932 263..137 635 100 Minus
3R 32079331 3R 24880993..24881113 137..17 605 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:05:32 has no hits.

BS16268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:42 Download gff for BS16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-PA 940..1773 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:44 Download gff for BS16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RE 2893..3729 11..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:01 Download gff for BS16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 1074..1910 11..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:01 Download gff for BS16268.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24880097..24880249 698..850 100 -> Minus
3R 24880313..24880746 264..697 100 -> Minus
3R 24880806..24880932 137..263 100 -> Minus
3R 24880994..24881116 11..136 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:44 Download gff for BS16268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20705819..20705971 698..850 100 -> Minus
arm_3R 20706035..20706468 264..697 100 -> Minus
arm_3R 20706528..20706654 137..263 100 -> Minus
arm_3R 20706716..20706838 11..136 97   Minus

BS16268.5prime Sequence

887 bp (770 high quality bases) assembled on 2007-05-15

> BS16268.5prime
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTC
CTCAATGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTG
GCAGTTGGTTAGGGAACTGAAGAANGCTCTGCAGCTGCCGGCGGCCACCA
GCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAAT
CCGGCACANGCCANGCTGTGCATGGTGGATGATCTGT

BS16268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PA 1773 CG11089-RA 1..871 17..887 4298 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-RB 2195 CG11089-RB 57..928 16..887 4327 99.7 Plus
CG11089-RA 2272 CG11089-RA 134..1005 16..887 4327 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24879176..24880028 35..887 4232 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 04:10:37 has no hits.

BS16268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:37 Download gff for BS16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:39 Download gff for BS16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RE 1944..2824 7..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:29 Download gff for BS16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11089-RA 125..1005 7..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:29 Download gff for BS16268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24879177..24880028 36..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:39 Download gff for BS16268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20704899..20705750 36..887 99   Plus

BS16268.pep Sequence

Translation from 16 to 1788

> BS16268.pep
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*

BS16268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11089-PB 590 CG11089-PB 1..590 1..590 2998 100 Plus
CG11089-PA 590 CG11089-PA 1..590 1..590 2998 100 Plus