Clone Sequence Records
BS16268.complete Sequence
1805 bp assembled on 2009-12-07
GenBank Submission: KX801320
> BS16268.complete
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTC
CTCAATGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTG
GCAGTTGGTTAGGGAACTGAAGAAGGCTCTGCAGCTGCCGGCGGCCACCA
GCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAAT
CCGGCACAGGCCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGAC
ACCTCTGGCAACGGCCTATGCTCGTGCCCGTGGTGCCGACCGCATGAGCT
CCTTCGGCGACTTTGTGGCCCTCTCTGATGTGTGCGATGTTGTGACGGCC
AGGATAATCTCGCGAGAGGTGTCCGATGGTATTATTGCCGCGGGTTATGA
GCCCGAAGCTCTGGAGATCCTGAAGAAAAAGAAGAATGGCGGCTACTGTA
TACTGCAGATGGACCCCAACTACGAACCCTCCGCGGTGGAGCGCAAGACT
ATTTTTGGTCTGACGCTGGAGCAGAAGCGCAACGATGCTGTCATCGACGC
CTCGCTCTTTTCCAATGTGGTGAGCAAGCGTGGTCCTCTGCCCGAGGTGG
CTGTGCGGGATCTGATCGTGGCCACCATTGCCTTGAAGTACACTCAGAGC
AACTCCGTGTGCTACGCCCGCGATGGCCAGGTCGTGGGCATCGGTGCCGG
CCAGCAGTCGAGGATTCACTGCACCCGCTTGGCGGGCGAGAAGGCGGACA
ACTGGTGGCTGCGTCAGCATCCCAGCGTGGCCGGCATGAAGTTCAAGGCT
GGTGTGAAGCGGGCGGAGATCTCTAATGCAATCGACAATTACGTAAACGG
AACTGTGGGCAAGGACATGCCTTTGTCGCAGTTCGAGGGAATGTTCGATA
AGGCACCAGCCCAACTGACCAGTGAGCAAAAAGTGGAATGGTTAAAGCAG
CTGAGTGGCGTGGCCTTGGGATCCGATGCCTTCTTCCCCTTCCGTGATAA
TATCGATCGCGCTAGCCTGAGCGGCGTCTCCTACATAGCCAGTCCCGCAG
GATCCACCAATGATGCTGGTGTCATTGCCGCCTGCGATGAGCACGGTATC
ATCATGGCCCATACCAATCTGCGATTGTTCCACCATTAGAAGCTTTCTAG
ACCAT
BS16268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-RB | 1773 | CG11089-PB | 1..1773 | 17..1789 | 8850 | 99.9 | Plus |
CG11089-RA | 1773 | CG11089-PA | 1..1773 | 17..1789 | 8850 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-RB | 2195 | CG11089-RB | 57..1830 | 16..1789 | 8855 | 99.9 | Plus |
CG11089-RA | 2272 | CG11089-RA | 134..1907 | 16..1789 | 8855 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24879176..24880249 | 35..1108 | 5355 | 99.9 | Plus |
3R | 32079331 | 3R | 24880311..24880748 | 1107..1544 | 2190 | 100 | Plus |
3R | 32079331 | 3R | 24880806..24880932 | 1543..1669 | 635 | 100 | Plus |
3R | 32079331 | 3R | 24880993..24881113 | 1669..1789 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:58 has no hits.
BS16268.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:47 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RA | 112..1884 | 17..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:18 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RE | 1954..3726 | 17..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:23 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RA | 112..1884 | 17..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:19 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RA | 135..1907 | 17..1789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:19 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24879101..24879119 | 17..35 | 100 | -> | Plus |
3R | 24879177..24880249 | 36..1108 | 99 | -> | Plus |
3R | 24880313..24880746 | 1109..1542 | 100 | -> | Plus |
3R | 24880806..24880932 | 1543..1669 | 100 | -> | Plus |
3R | 24880994..24881113 | 1670..1789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:18 Download gff for
BS16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20704823..20704841 | 17..35 | 100 | -> | Plus |
arm_3R | 20704899..20705971 | 36..1108 | 99 | -> | Plus |
arm_3R | 20706035..20706468 | 1109..1542 | 100 | -> | Plus |
arm_3R | 20706528..20706654 | 1543..1669 | 100 | -> | Plus |
arm_3R | 20706716..20706835 | 1670..1789 | 100 | | Plus |
BS16268.3prime Sequence
850 bp (748 high quality bases) assembled on 2007-05-15
> BS16268.3prime
ATGGTCTAGAAAGCTTCTAATGGTGGAACAATCGCAGATTGGTATGGGCC
ATGATGATACCGTGCTCATCGCAGGCGGCAATGACACCAGCATCATTGGT
GGATCCTGCGGGACTGGCTATGTAGGAGACGCCGCTCAGGCTAGCGCGAT
CGATATTATCACGGAAGGGGAAGAAGGCATCGGATCCCAAGGCCACGCCA
CTCAGCTGCTTTAACCATTCCACTTTTTGCTCACTGGTCAGTTGGGCTGG
TGCCTTATCGAACATTCCCTCGAACTGCGACAAAGGCATGTCCTTGCCCA
CAGTTCCGTTTACGTAATTGTCGATTGCATTAGAGATCTCCGCCCGCTTC
ACACCAGCCTTGAACTTCATGCCGGCCACGCTGGGATGCTGACGCAGCCA
CCAGTTGTCCGCCTTCTCGCCCGCCAAGCGGGTGCAGTGAATCCTCGACT
GCTGGCCGGCACCGATGCCCACGACCTGGCCATCGCGGGCGTAGCACACG
GAGTTGCTCTGAGTGTACTTCAAGGCAATGGTGGCCACGATCAGATCCCG
CACAGCCACCTCGGGCAGAGGACCACGCTTGCTCACCACATTGGAAAAGA
GCGAGGCGTCGATGACAGCATCGTTGCGCTTCTGCTCCAGCGTCAGACCA
AAAATAGTCTTGCGCTCCACCGCGGAGGGTTCGTAGTTGGGGTCCATCTG
CAGTATACAGTAGCCGCCATTCTTCTTTTTCTTCAGGATCTCCAGAGCTT
CGGGCTCATAACCCGCGGCAATAATACCATCGGACACCTCTCGCGAGATT
ATCCTGGCCGTCACAACATCGCACACATCAGAGAGGGCCACAAAGTCGCC
BS16268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-PA | 1773 | CG11089-RA | 940..1773 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-RB | 2195 | CG11089-RB | 997..1830 | 850..17 | 4170 | 100 | Minus |
CG11089-RA | 2272 | CG11089-RA | 1074..1907 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24880311..24880748 | 699..262 | 2190 | 100 | Minus |
3R | 32079331 | 3R | 24880097..24880249 | 850..698 | 765 | 100 | Minus |
3R | 32079331 | 3R | 24880806..24880932 | 263..137 | 635 | 100 | Minus |
3R | 32079331 | 3R | 24880993..24881113 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:05:32 has no hits.
BS16268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:42 Download gff for
BS16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-PA | 940..1773 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:44 Download gff for
BS16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RE | 2893..3729 | 11..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:01 Download gff for
BS16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RA | 1074..1910 | 11..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:01 Download gff for
BS16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24880097..24880249 | 698..850 | 100 | -> | Minus |
3R | 24880313..24880746 | 264..697 | 100 | -> | Minus |
3R | 24880806..24880932 | 137..263 | 100 | -> | Minus |
3R | 24880994..24881116 | 11..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:44 Download gff for
BS16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20705819..20705971 | 698..850 | 100 | -> | Minus |
arm_3R | 20706035..20706468 | 264..697 | 100 | -> | Minus |
arm_3R | 20706528..20706654 | 137..263 | 100 | -> | Minus |
arm_3R | 20706716..20706838 | 11..136 | 97 | | Minus |
BS16268.5prime Sequence
887 bp (770 high quality bases) assembled on 2007-05-15
> BS16268.5prime
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTC
CTCAATGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTG
GCAGTTGGTTAGGGAACTGAAGAANGCTCTGCAGCTGCCGGCGGCCACCA
GCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAAT
CCGGCACANGCCANGCTGTGCATGGTGGATGATCTGT
BS16268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-PA | 1773 | CG11089-RA | 1..871 | 17..887 | 4298 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-RB | 2195 | CG11089-RB | 57..928 | 16..887 | 4327 | 99.7 | Plus |
CG11089-RA | 2272 | CG11089-RA | 134..1005 | 16..887 | 4327 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24879176..24880028 | 35..887 | 4232 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:10:37 has no hits.
BS16268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:37 Download gff for
BS16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:39 Download gff for
BS16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RE | 1944..2824 | 7..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:29 Download gff for
BS16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11089-RA | 125..1005 | 7..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:29 Download gff for
BS16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24879177..24880028 | 36..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:39 Download gff for
BS16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20704899..20705750 | 36..887 | 99 | | Plus |
BS16268.pep Sequence
Translation from 16 to 1788
> BS16268.pep
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHH*
BS16268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11089-PB | 590 | CG11089-PB | 1..590 | 1..590 | 2998 | 100 | Plus |
CG11089-PA | 590 | CG11089-PA | 1..590 | 1..590 | 2998 | 100 | Plus |