Clone BS16274 Report

Search the DGRC for BS16274

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG43394-RA
Protein status:BS16274.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16274.3prime Sequence

865 bp (812 high quality bases) assembled on 2007-05-15

> BS16274.3prime
ATGGTCTAGAAAGCTTCTAACCACCATTCGGCGTCTCCATCGTGGCCCGT
CTCATATTCGCATCGATTCGCACATGAAGACTGGACAACGTCGTGTCAAC
TGGCAGATCCAGCTCTTGACTACCTTGATACGCGTCCGCTACTAGGGTGA
GCGTATTGCCAGCTATATGCTGTCCGTGCTCGGTGCTCACAATGTGGATG
ATCTCGCCACCGGATCGGATGGCCACCTCACCCAGAATGCCGCCCACTGC
GTCCTCCGTTTCGTTTTCGCTGCCCGATCGCTCTCCGTACCACAAAAGGA
ATAACCTGATCCTCTTCTTTAGAAGAGTAATGGCCGCATCTTGGACCAGT
TCCGTGTGTGGTGGGATGACTGCGGTCGAGATGAAAACAGCACTGTCGTA
GGGAACCAGCTCGGCGGCATGCAAAACGCCCACAAACGAGTTGCCGCCCT
CGTGCTCCTTGGTGCTATTCAAGCCAGCGATGAACTCCCGGGTGTTGTTG
AAGCTGAAGGCAGAAGGAGCACCGGCTGCATTAAGTGTTACCAAAACTAT
TTTGATATCGATGTTCTTGTCCTGCAAAGCATCGATATAGAGACGCTTTG
CCTGCTCCAAGGATGCGGAAGAAGGATCCACAATCACAGCCAGAGGCATG
CGAATGTACACATCCTTGATGTAGTTGCGCAGCTGATCCGCGGGCAACAA
TTCCGGCTTTAAGCCACCGGTCACTTGGATGTGCTTGGGCTGTTTTCTAG
GACTGGGAGTTGTTGTGGTTGATGTGGTGGTCGTTGTCGTCGTCGTCGAT
GTAGTTGTCGTTGAGCTTGTTGAACTGGTGGTAGGAGGACTGGGTGCCTG
GGTGGTGGCCCAGGG

BS16274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31607-PA 1614 CG31607-RA 766..1614 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-RA 2675 CG43394-RA 1340..2188 865..17 4245 100 Minus
CG43394-RD 2365 CG31607-RD 1030..1878 865..17 4245 100 Minus
CG43394-RC 3186 CG43394-RC 1030..1873 865..22 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8153400..8153744 865..521 1725 100 Minus
2L 23513712 2L 8153834..8154052 523..305 1095 100 Minus
2L 23513712 2L 8154158..8154311 305..152 770 100 Minus
2L 23513712 2L 8154981..8155116 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:44:46 has no hits.

BS16274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:05 Download gff for BS16274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31607-PA 766..1614 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:39 Download gff for BS16274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 1030..1885 8..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:05 Download gff for BS16274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 1030..1885 8..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:05 Download gff for BS16274.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8153400..8153742 523..865 100 -> Minus
2L 8153835..8154052 305..522 100 -> Minus
2L 8154159..8154311 152..304 100 -> Minus
2L 8154982..8155123 8..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:39 Download gff for BS16274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8153400..8153742 523..865 100 -> Minus
arm_2L 8153835..8154052 305..522 100 -> Minus
arm_2L 8154159..8154311 152..304 100 -> Minus
arm_2L 8154982..8155123 8..151 97   Minus

BS16274.5prime Sequence

822 bp (784 high quality bases) assembled on 2007-05-15

> BS16274.5prime
GAAGTTATCAGTCGACATGATTTTGAGAACGCACCTCTGGCTGGGAGTGC
TCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGATGAAGAC
TATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGAGATCTA
CGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGCAGCATC
GCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATGGAGCTG
GAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCATGGCTCC
GTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTTCCACCC
AAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTATTACGAA
GATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGTGGCTAC
CACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGATTCCCCC
AGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGATGCCACC
AAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGTTGAGCA
ACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTCGGGACA
AACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGATGAGCAT
GCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGCACCCTT
GCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCACCCAGG
CACCCAGTCCTCCTACCACCAG

BS16274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31607-PA 1614 CG31607-RA 1..806 17..822 4005 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-RC 3186 CG43394-RC 254..1070 6..822 4040 99.6 Plus
CG43394-RB 3496 CG31900-RA 564..1380 6..822 4040 99.6 Plus
CG43394-RA 2675 CG43394-RA 564..1380 6..822 4040 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8152624..8153440 6..822 4040 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 06:06:37 has no hits.

BS16274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:58 Download gff for BS16274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31607-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:12 Download gff for BS16274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43394-RA 564..1380 6..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:31 Download gff for BS16274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43394-RA 564..1380 6..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:31 Download gff for BS16274.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8152624..8153440 6..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:12 Download gff for BS16274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8152624..8153440 6..822 99   Plus

BS16274.complete Sequence

1646 bp assembled on 2007-05-07

GenBank Submission: FJ638110

> BS16274.complete
GAAGTTATCAGTCGACATGATTTTGAGAACGCACCTCTGGCTGGGAGTGC
TCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGATGAAGAC
TATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGAGATCTA
CGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGCAGCATC
GCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATGGAGCTG
GAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCATGGCTCC
GTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTTCCACCC
AAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTATTACGAA
GATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGTGGCTAC
CACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGATTCCCCC
AGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGATGCCACC
AAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGTTGAGCA
ACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTCGGGACA
AACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGATGAGCAT
GCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGCACCCTT
GCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCACCCAGG
CACCCAGTCCTCCTACCACCAGTTCAACAAGCTCAACGACAACTACATCG
ACGACGACGACAACGACCACCACATCAACCACAACAACTCCCAGTCCTAG
AAAACAGCCCAAGCACATCCAAGTGACCGGTGGCTTAAAGCCGGAATTGT
TGCCCGCGGATCAGCTGCGCAACTACATCAAGGATGTGTACATTCGCATG
CCTCTGGCTGTGATTGTGGATCCTTCTTCCGCATCCTTGGAGCAGGCAAA
GCGTCTCTATATCGATGCTTTGCAGGACAAGAACATCGATATCAAAATAG
TTTTGGTAACACTTAATGCAGCCGGTGCTCCTTCTGCCTTCAGCTTCAAC
AACACCCGGGAGTTCATCGCTGGCTTGAATAGCACCAAGGAGCACGAGGG
CGGCAACTCGTTTGTGGGCGTTTTGCATGCCGCCGAGCTGGTTCCCTACG
ACAGTGCTGTTTTCATCTCGACCGCAGTCATCCCACCACACACGGAACTG
GTCCAAGATGCGGCCATTACTCTTCTAAAGAAGAGGATCAGGTTATTCCT
TTTGTGGTACGGAGAGCGATCGGGCAGCGAAAACGAAACGGAGGACGCAG
TGGGCGGCATTCTGGGTGAGGTGGCCATCCGATCCGGTGGCGAGATCATC
CACATTGTGAGCACCGAGCACGGACAGCATATAGCTGGCAATACGCTCAC
CCTAGTAGCGGACGCGTATCAAGGTAGTCAAGAGCTGGATCTGCCAGTTG
ACACGACGTTGTCCAGTCTTCATGTGCGAATCGATGCGAATATGAGACGG
GCCACGATGGAGACGCCGAATGGTGGTTAGAAGCTTTCTAGACCAT

BS16274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-RA 1614 CG43394-PA 1..1614 17..1630 8055 99.9 Plus
CG43394-RD 1614 CG43394-PD 1..1614 17..1630 8055 99.9 Plus
CG43394-RC 2847 CG43394-PC 1..1609 17..1625 8030 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-RA 2675 CG43394-RA 564..2188 6..1630 8080 99.8 Plus
CG43394-RD 2365 CG31607-RD 254..1878 6..1630 8080 99.8 Plus
CG43394-RC 3186 CG43394-RC 254..1873 6..1625 8055 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8152624..8153744 6..1126 5560 99.7 Plus
2L 23513712 2L 8153834..8154052 1124..1342 1095 100 Plus
2L 23513712 2L 8154158..8154311 1342..1495 770 100 Plus
2L 23513712 2L 8154981..8155116 1495..1630 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:50:59 has no hits.

BS16274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:18 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..1614 17..1630 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:24 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 566..2197 6..1639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:18 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 265..1878 17..1630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:19 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 566..2197 6..1639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:30 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 265..1878 17..1630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:30 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8152635..8153742 17..1124 99 -> Plus
2L 8153835..8154052 1125..1342 100 -> Plus
2L 8154159..8154311 1343..1495 100 -> Plus
2L 8154982..8155116 1496..1630 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:18 Download gff for BS16274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8152635..8153742 17..1124 99 -> Plus
arm_2L 8153835..8154052 1125..1342 100 -> Plus
arm_2L 8154159..8154311 1343..1495 100 -> Plus
arm_2L 8154982..8155116 1496..1630 100   Plus

BS16274.pep Sequence

Translation from 16 to 1629

> BS16274.pep
MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL
EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN
SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE
YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP
QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA
RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH
IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID
ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV
GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE
RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA
YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*

BS16274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-PA 537 CG31607-PA 1..537 1..537 2741 100 Plus
CG43394-PD 537 CG43394-PD 1..537 1..537 2741 100 Plus
CG43394-PC 948 CG43394-PC 1..536 1..536 2735 100 Plus
CG43394-PB 948 CG43394-PB 1..536 1..536 2735 100 Plus
CG43394-PE 525 CG43394-PE 1..499 1..499 2522 99 Plus