Clone Sequence Records
BS16274.3prime Sequence
865 bp (812 high quality bases) assembled on 2007-05-15
> BS16274.3prime
ATGGTCTAGAAAGCTTCTAACCACCATTCGGCGTCTCCATCGTGGCCCGT
CTCATATTCGCATCGATTCGCACATGAAGACTGGACAACGTCGTGTCAAC
TGGCAGATCCAGCTCTTGACTACCTTGATACGCGTCCGCTACTAGGGTGA
GCGTATTGCCAGCTATATGCTGTCCGTGCTCGGTGCTCACAATGTGGATG
ATCTCGCCACCGGATCGGATGGCCACCTCACCCAGAATGCCGCCCACTGC
GTCCTCCGTTTCGTTTTCGCTGCCCGATCGCTCTCCGTACCACAAAAGGA
ATAACCTGATCCTCTTCTTTAGAAGAGTAATGGCCGCATCTTGGACCAGT
TCCGTGTGTGGTGGGATGACTGCGGTCGAGATGAAAACAGCACTGTCGTA
GGGAACCAGCTCGGCGGCATGCAAAACGCCCACAAACGAGTTGCCGCCCT
CGTGCTCCTTGGTGCTATTCAAGCCAGCGATGAACTCCCGGGTGTTGTTG
AAGCTGAAGGCAGAAGGAGCACCGGCTGCATTAAGTGTTACCAAAACTAT
TTTGATATCGATGTTCTTGTCCTGCAAAGCATCGATATAGAGACGCTTTG
CCTGCTCCAAGGATGCGGAAGAAGGATCCACAATCACAGCCAGAGGCATG
CGAATGTACACATCCTTGATGTAGTTGCGCAGCTGATCCGCGGGCAACAA
TTCCGGCTTTAAGCCACCGGTCACTTGGATGTGCTTGGGCTGTTTTCTAG
GACTGGGAGTTGTTGTGGTTGATGTGGTGGTCGTTGTCGTCGTCGTCGAT
GTAGTTGTCGTTGAGCTTGTTGAACTGGTGGTAGGAGGACTGGGTGCCTG
GGTGGTGGCCCAGGG
BS16274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31607-PA | 1614 | CG31607-RA | 766..1614 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43394-RA | 2675 | CG43394-RA | 1340..2188 | 865..17 | 4245 | 100 | Minus |
CG43394-RD | 2365 | CG31607-RD | 1030..1878 | 865..17 | 4245 | 100 | Minus |
CG43394-RC | 3186 | CG43394-RC | 1030..1873 | 865..22 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8153400..8153744 | 865..521 | 1725 | 100 | Minus |
2L | 23513712 | 2L | 8153834..8154052 | 523..305 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 8154158..8154311 | 305..152 | 770 | 100 | Minus |
2L | 23513712 | 2L | 8154981..8155116 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:44:46 has no hits.
BS16274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:05 Download gff for
BS16274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31607-PA | 766..1614 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:39 Download gff for
BS16274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RD | 1030..1885 | 8..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:05 Download gff for
BS16274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RD | 1030..1885 | 8..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:05 Download gff for
BS16274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8153400..8153742 | 523..865 | 100 | -> | Minus |
2L | 8153835..8154052 | 305..522 | 100 | -> | Minus |
2L | 8154159..8154311 | 152..304 | 100 | -> | Minus |
2L | 8154982..8155123 | 8..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:39 Download gff for
BS16274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8153400..8153742 | 523..865 | 100 | -> | Minus |
arm_2L | 8153835..8154052 | 305..522 | 100 | -> | Minus |
arm_2L | 8154159..8154311 | 152..304 | 100 | -> | Minus |
arm_2L | 8154982..8155123 | 8..151 | 97 | | Minus |
BS16274.5prime Sequence
822 bp (784 high quality bases) assembled on 2007-05-15
> BS16274.5prime
GAAGTTATCAGTCGACATGATTTTGAGAACGCACCTCTGGCTGGGAGTGC
TCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGATGAAGAC
TATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGAGATCTA
CGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGCAGCATC
GCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATGGAGCTG
GAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCATGGCTCC
GTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTTCCACCC
AAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTATTACGAA
GATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGTGGCTAC
CACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGATTCCCCC
AGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGATGCCACC
AAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGTTGAGCA
ACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTCGGGACA
AACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGATGAGCAT
GCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGCACCCTT
GCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCACCCAGG
CACCCAGTCCTCCTACCACCAG
BS16274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31607-PA | 1614 | CG31607-RA | 1..806 | 17..822 | 4005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43394-RC | 3186 | CG43394-RC | 254..1070 | 6..822 | 4040 | 99.6 | Plus |
CG43394-RB | 3496 | CG31900-RA | 564..1380 | 6..822 | 4040 | 99.6 | Plus |
CG43394-RA | 2675 | CG43394-RA | 564..1380 | 6..822 | 4040 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8152624..8153440 | 6..822 | 4040 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:37 has no hits.
BS16274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:58 Download gff for
BS16274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31607-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:12 Download gff for
BS16274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RA | 564..1380 | 6..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:31 Download gff for
BS16274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RA | 564..1380 | 6..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:31 Download gff for
BS16274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8152624..8153440 | 6..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:12 Download gff for
BS16274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8152624..8153440 | 6..822 | 99 | | Plus |
BS16274.complete Sequence
1646 bp assembled on 2007-05-07
GenBank Submission: FJ638110
> BS16274.complete
GAAGTTATCAGTCGACATGATTTTGAGAACGCACCTCTGGCTGGGAGTGC
TCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGATGAAGAC
TATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGAGATCTA
CGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGCAGCATC
GCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATGGAGCTG
GAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCATGGCTCC
GTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTTCCACCC
AAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTATTACGAA
GATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGTGGCTAC
CACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGATTCCCCC
AGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGATGCCACC
AAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGTTGAGCA
ACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTCGGGACA
AACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGATGAGCAT
GCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGCACCCTT
GCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCACCCAGG
CACCCAGTCCTCCTACCACCAGTTCAACAAGCTCAACGACAACTACATCG
ACGACGACGACAACGACCACCACATCAACCACAACAACTCCCAGTCCTAG
AAAACAGCCCAAGCACATCCAAGTGACCGGTGGCTTAAAGCCGGAATTGT
TGCCCGCGGATCAGCTGCGCAACTACATCAAGGATGTGTACATTCGCATG
CCTCTGGCTGTGATTGTGGATCCTTCTTCCGCATCCTTGGAGCAGGCAAA
GCGTCTCTATATCGATGCTTTGCAGGACAAGAACATCGATATCAAAATAG
TTTTGGTAACACTTAATGCAGCCGGTGCTCCTTCTGCCTTCAGCTTCAAC
AACACCCGGGAGTTCATCGCTGGCTTGAATAGCACCAAGGAGCACGAGGG
CGGCAACTCGTTTGTGGGCGTTTTGCATGCCGCCGAGCTGGTTCCCTACG
ACAGTGCTGTTTTCATCTCGACCGCAGTCATCCCACCACACACGGAACTG
GTCCAAGATGCGGCCATTACTCTTCTAAAGAAGAGGATCAGGTTATTCCT
TTTGTGGTACGGAGAGCGATCGGGCAGCGAAAACGAAACGGAGGACGCAG
TGGGCGGCATTCTGGGTGAGGTGGCCATCCGATCCGGTGGCGAGATCATC
CACATTGTGAGCACCGAGCACGGACAGCATATAGCTGGCAATACGCTCAC
CCTAGTAGCGGACGCGTATCAAGGTAGTCAAGAGCTGGATCTGCCAGTTG
ACACGACGTTGTCCAGTCTTCATGTGCGAATCGATGCGAATATGAGACGG
GCCACGATGGAGACGCCGAATGGTGGTTAGAAGCTTTCTAGACCAT
BS16274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43394-RA | 1614 | CG43394-PA | 1..1614 | 17..1630 | 8055 | 99.9 | Plus |
CG43394-RD | 1614 | CG43394-PD | 1..1614 | 17..1630 | 8055 | 99.9 | Plus |
CG43394-RC | 2847 | CG43394-PC | 1..1609 | 17..1625 | 8030 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43394-RA | 2675 | CG43394-RA | 564..2188 | 6..1630 | 8080 | 99.8 | Plus |
CG43394-RD | 2365 | CG31607-RD | 254..1878 | 6..1630 | 8080 | 99.8 | Plus |
CG43394-RC | 3186 | CG43394-RC | 254..1873 | 6..1625 | 8055 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8152624..8153744 | 6..1126 | 5560 | 99.7 | Plus |
2L | 23513712 | 2L | 8153834..8154052 | 1124..1342 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 8154158..8154311 | 1342..1495 | 770 | 100 | Plus |
2L | 23513712 | 2L | 8154981..8155116 | 1495..1630 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:50:59 has no hits.
BS16274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:18 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31607-RA | 1..1614 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:24 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31607-RA | 566..2197 | 6..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:18 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RD | 265..1878 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:19 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31607-RA | 566..2197 | 6..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:30 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43394-RD | 265..1878 | 17..1630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:30 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8152635..8153742 | 17..1124 | 99 | -> | Plus |
2L | 8153835..8154052 | 1125..1342 | 100 | -> | Plus |
2L | 8154159..8154311 | 1343..1495 | 100 | -> | Plus |
2L | 8154982..8155116 | 1496..1630 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:18 Download gff for
BS16274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8152635..8153742 | 17..1124 | 99 | -> | Plus |
arm_2L | 8153835..8154052 | 1125..1342 | 100 | -> | Plus |
arm_2L | 8154159..8154311 | 1343..1495 | 100 | -> | Plus |
arm_2L | 8154982..8155116 | 1496..1630 | 100 | | Plus |
BS16274.pep Sequence
Translation from 16 to 1629
> BS16274.pep
MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL
EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN
SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE
YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP
QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA
RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH
IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID
ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV
GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE
RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA
YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*
BS16274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43394-PA | 537 | CG31607-PA | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PD | 537 | CG43394-PD | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PC | 948 | CG43394-PC | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PB | 948 | CG43394-PB | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PE | 525 | CG43394-PE | 1..499 | 1..499 | 2522 | 99 | Plus |