Clone Sequence Records
BS16278.complete Sequence
2363 bp assembled on 2009-12-07
GenBank Submission: KX804384
> BS16278.complete
GAAGTTATCAGTCGACATGGGTCAAAAACTATCGTGTTGCCAAAAGTGCG
GCGATTGGAAGTGGTGTACATCTAAGGACAACGAGGAGTCAACGCTGCGT
ATACGCAATGCCAATGCCAACTATTTTACGGGCATTCCACAAGGCGACAA
AACAGATGGCGCCAGCTCAGCAGTATTGGGCGTTTTGAAGGTCGATCTGT
GCCTGGAGGACAACCATGAGGAGCACCATACGAGTCACTTCTATGCGGCA
GCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAA
GATCCACTTCAATCGAGACTACAGTCCCAGCAAGGACGCCATCAGTTTCA
TTTTCACAGTAGCGGATGACACCAAGCCGAGTCCCGGTCATGGAACACTC
AATGCCCTGGTGCCGCACGATGGCATCGATTATCTGGGCGACACTTTGGA
ATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACGCTTACGGTGCTAA
TCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATCGAC
ACGAAGCTGCTGGGCGATGGATCGCGAAGCTATCCCCTGCCGTTGCCCAT
CTATGTACTCTTTAATCCCTGGTGTCCGGATGATCAGGTGTATCTGGAGG
ATCGTGATCAGCGCAAGGAGTACGTGATGCACGATACCACGCTCATCTGG
AGGGGATCGTACAACAGATTGCGTCCATCGGTTTGGAAAATCGGGCAATT
CGAACGACATGTGCTCGAGTGCAGCCTAAAGGTATTGGGTACGGTGGGCA
GGATTCCGCCAGCCTACAGAGGCGATCCCGTGAGAGTTGCTCGCGCCTTG
TCCGCACTGGTGAATTCGGTGGATGATGACGGTGTTTTGCTGGGCAACTG
GTCAGAGGACTTCTCCGGCGGCGTGGCACCCACCAAGTGGACTGGGTCCG
TGGAGATTCTTCAGCAATTCTACAAGACCCAGAAGTCGGTGAAGTTTGCA
CAGTGCTGGAATTTCAGCGGTGTTCTGACCACCATTGCCAGGAGTCTGGG
AATACCGTCTAGGATCATCACTTGCTACTCCTCCGCCCACGATACACAGG
CCTCACTCACCGTGGACGTGTTCATCGACGCGAACAACAAGAAGTTGGAT
GCAGAGACCACGGACTCGATCTGGAACTATCACGTGTGGAATGAGCTCTG
GATGCAGAGACCGGATTTGGGCGTGGGTGAGCACGGGACCTTCGATGGCT
GGCAGGTGGTGGACGCCACTCCGCAGGAGGCCTCCGATAATATGTATCGC
GTGGGACCCGCCTCCGTTGCGGCGGTGAAAAACGGTGACATCTTGCGACC
ATTCGATGGTGGTTTCGTCTTCGCGGAGGTGAATGCGGATAAGCTCTATT
GGCGCTACAATGGACCCAGCCAGCCGCTTAAGCTGCTCAGGAAGGATACG
CTGGCCATAGGGCATCTCATCAGCACGAAAGCGGTACTCAAATGGGAAAG
GGAGGACATCACCGATACGTATAAGCATGCCGAGCGCTCCGAGGAGGAGA
GAAGCACCATGCTCAAGGCCCTCAAGCAATCCCGACATGCGTTCAGTAGA
TACTATCTGAATGATAATTTCAATGATATTGAATTTGATATGGAGCTAAA
GGACGACATTAAGATTGGGCAGAGCTTCAGTGTGGTCCTGAAGGTGAGCA
ACAAGAGCGAGAGTCGCACACACATGGCCACGGGTCAGATCAGTTGCGAT
GCCGTGCTCTACACGGGAGTGGGTGCCGTGGAGGTGAAGACACTGGGCTT
TGAACTGGAATTGGAGCCCAAGAGCAGCGATTACGTTCGCATGGAGGTGA
TCTTCGAGGAATACTACGATAAGTTGTCCTCGCAGGCGGCATTCCAGATC
TCGGCGGCCGCCAAGGTCAAGGACACCGACTATGATTACTATGCCCAGGA
TGATTTCCGTGTGCGCAAGCCGGACATTAAGTTCCAGCTGGGTGAGGCTG
CCATTGTGGCCCAGAAGGAGCTGGACGTTATTCTGCGACTGGAGAACCCG
CTGCCCATACCGCTGCACAAGGGTGTGTTCACAGTGGAGGGTCCTGGCAT
CGAGCAGCCTCTCAAGTTCAAGATCGCTGAAATTCCAGTGGGTGGCACTG
CGGCGGCTACCTTCAAGTACACTCCGCCCTACGCGGGGCGTGGCACCATG
TTAGCCAAATTCACGTCCAAGGAACTGGACGATGTGGATGGCTATAGGCA
CTACGAGATTGAGCCACGACCGGAGGATCTGCTGCAGCCGAATGGAAGCC
ACCGAAGCAGCAACATCATACGCAGGCGCACCGATGTAATAGCTTAGAAG
CTTTCTAGACCAT
BS16278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RA | 2331 | CG7356-PA | 1..2331 | 17..2347 | 11640 | 100 | Plus |
| Tg-RB | 2307 | CG7356-PB | 114..2307 | 154..2347 | 10955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RA | 2797 | CG7356-RA | 338..2671 | 14..2347 | 11655 | 100 | Plus |
| Tg-RB | 2601 | CG7356-RB | 331..2524 | 154..2347 | 10955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8024512..8026483 | 151..2122 | 9845 | 99.9 | Plus |
| 2L | 23513712 | 2L | 8026546..8026772 | 2121..2347 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 8011742..8011883 | 14..155 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:54 has no hits.
BS16278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:46 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-RA | 339..2669 | 17..2347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:16 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 341..2671 | 17..2347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:38 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-RA | 339..2669 | 17..2347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:18 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 341..2671 | 17..2347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:18 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8011745..8011883 | 17..155 | 100 | -> | Plus |
| 2L | 8024517..8026483 | 156..2122 | 99 | -> | Plus |
| 2L | 8026548..8026772 | 2123..2347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:16 Download gff for
BS16278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8011745..8011883 | 17..155 | 100 | -> | Plus |
| arm_2L | 8024517..8026483 | 156..2122 | 99 | -> | Plus |
| arm_2L | 8026548..8026772 | 2123..2347 | 100 | | Plus |
BS16278.3prime Sequence
925 bp (789 high quality bases) assembled on 2007-05-15
> BS16278.3prime
ATGGTCTAGAAAGCTTCTAAGCTATTACATCGGTGCGCCTGCGTATGATG
TTGCTGCTTCGGTGGCTTCCATTCGGCTGCAGCAGATCCTCCGGTCGTGG
CTCAATCTCGTAGTGCCTATAGCCATCCACATCGTCCAGTTCCTTGGACG
TGAATTTGGCTAACATGGTGCCACGCCCCGCGTAGGGCGGAGTGTACTTG
AAGGTAGCCGCCGCAGTGCCACCCACTGGAATTTCAGCGATCTTGAACTT
GAGAGGCTGCTCGATGCCAGGACCCTCCACTGTGAACACACCCTTGTGCA
GCGGTATGGGCAGCGGGTTCTCCAGTCGCAGAATAACGTCCAGCTCCTTC
TGGGCCACAATGGCAGCCTCACCCAGCTGGAACTTAATGTCCGGCTTGCG
CACACGGAAATCATCCTGGGCATAGTAATCATAGTCGGTGTCCTTGACCT
TGGCGGCCGCCGAGATCTGGAATGCCGCCTGCGAGGACAACTTATCGTAG
TATTCCTCGAAGATCACCTCCATGCGAACGTAATCGCTGCTCTTGGGCTC
CAATTCCAGTTCAAAGCCCAGTGTCTTCACCTCCACGGCACCCACTCCCG
TGTAGAGCACGGCATCGCAACTGATCTGACCCGTGGCCATGTGTGTGCGA
CTCTCGCTCTTGTTGCTCACCTTCAGGACCACACTGAAGCTCTGCCCAAT
CTTAATGTCGTCCTTTAGCTCCATATCAAATTCAATATCATTGAAATTAT
CATTCAGATAGTATCTACTGAACGCATGTCGGGATTGCTTGAGGGCCTTG
AGCATGGTGCTTCTCTCCTCCTCGGAGCGCTCGGCATGCTTATACGTATC
GGTGATGTCCTCCCTTTCCCATTTGAGTACCGCTTTCGTGCTGATGAGAT
GCCCTATGGCCAGCGTATCCTTCCT
BS16278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7356-PA | 2331 | CG7356-RA | 1423..2331 | 925..17 | 4545 | 100 | Minus |
| CG7356-PB | 2307 | CG7356-RB | 1399..2307 | 925..17 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RB | 2601 | CG7356-RB | 1616..2524 | 925..17 | 4545 | 100 | Minus |
| Tg-RA | 2797 | CG7356-RA | 1763..2671 | 925..17 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8025800..8026483 | 925..242 | 3420 | 100 | Minus |
| 2L | 23513712 | 2L | 8026546..8026772 | 243..17 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:31:55 has no hits.
BS16278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:33 Download gff for
BS16278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-PB | 1399..2307 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:18 Download gff for
BS16278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 1763..2674 | 12..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:22 Download gff for
BS16278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 1763..2674 | 12..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:22 Download gff for
BS16278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8025800..8026483 | 242..925 | 100 | -> | Minus |
| 2L | 8026548..8026775 | 12..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:18 Download gff for
BS16278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8025800..8026483 | 242..925 | 100 | -> | Minus |
| arm_2L | 8026548..8026775 | 12..241 | 99 | | Minus |
BS16278.5prime Sequence
903 bp (774 high quality bases) assembled on 2007-05-15
> BS16278.5prime
GAAGTTATCAGTCGACATGGGTCAAAAACTATCGTGTTGCCAAAAGTGCG
GCGATTGGAAGTGGTGTACATCTAAGGACAACGAGGAGTCAACGCTGCGT
ATACGCAATGCCAATGCCAACTATTTTACGGGCATTCCACAAGGCGACAA
AACAGATGGCGCCAGCTCAGCAGTATTGGGCGTTTTGAAGGTCGATCTGT
GCCTGGAGGACAACCATGAGGAGCACCATACGAGTCACTTCTATGCGGCA
GCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAA
GATCCACTTCAATCGAGACTACAGTCCCAGCAAGGACGCCATCAGTTTCA
TTTTCACAGTAGCGGATGACACCAAGCCGAGTCCCGGTCATGGAACACTC
AATGCCCTGGTGCCGCACGATGGCATCGATTATCTGGGCGACACTTTGGA
ATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACGCTTACGGTGCTAA
TCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATCGAC
ACGAAGCTGCTGGGCGATGGATCGCGAAGCTATCCCCTGCCGTTGCCCAT
CTATGTACTCTTTAATCCCTGGTGTCCGGATGATCAGGTGTATCTGGAGG
ATCGTGATCAGCGCAAGGAGTACGTGATGCACGATACCACGCTCATCTGG
AGGGGATCGTACAACAGATTGCGTCCATCGGTTTGGAAAATCGGGCAATT
CGAACGACATGTGCTCGAGTGCAGCCTAAAGGTATTGGGTACGGTGGGCA
GGATTCCGCCAGCCTACAGAGGCGATCCCGTGAGAGTTGCTCGCGCCTTG
TCCGCACTGGTGAATTCNGTGGATGATGACNGTGTTTTGCTGGGCAACTG
GTC
BS16278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7356-PA | 2331 | CG7356-RA | 1..887 | 17..903 | 4372 | 99.6 | Plus |
| CG7356-PB | 2307 | CG7356-RB | 114..863 | 154..903 | 3687 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RA | 2797 | CG7356-RA | 338..1227 | 14..903 | 4413 | 99.7 | Plus |
| Tg-RB | 2601 | CG7356-RB | 331..1080 | 154..903 | 3713 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8024512..8025264 | 151..903 | 3728 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8011742..8011883 | 14..155 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:09:51 has no hits.
BS16278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:12 Download gff for
BS16278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:52 Download gff for
BS16278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 338..1227 | 14..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:36 Download gff for
BS16278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 338..1227 | 14..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:36 Download gff for
BS16278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8011742..8011883 | 14..155 | 100 | -> | Plus |
| 2L | 8024517..8025264 | 156..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:52 Download gff for
BS16278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8011742..8011883 | 14..155 | 100 | -> | Plus |
| arm_2L | 8024517..8025264 | 156..903 | 99 | | Plus |
BS16278.pep Sequence
Translation from 16 to 2346
> BS16278.pep
MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS
SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR
DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI
ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN
PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL
ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS
GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI
ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD
LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF
VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD
TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI
GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE
PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR
KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK
FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP
RPEDLLQPNGSHRSSNIIRRRTDVIA*
BS16278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-PA | 776 | CG7356-PA | 1..776 | 1..776 | 4119 | 100 | Plus |
| Tg-PB | 768 | CG7356-PB | 33..768 | 41..776 | 3864 | 99.5 | Plus |
