Clone Sequence Records
BS16279.3prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-15
> BS16279.3prime
ATGGTCTAGAAAGCTTTTATTTCGTGTACAGGTAAATGGCCACAATCAAG
CCGTAGAGACCCAACACTTCGGCGAAGATGAGAATCAGGATCATGCCCAC
GAACAGTCTAGGCTGCTGTGCTGTGCCACGGACACCGGCGTCTCCCACGA
TGCCGATCGCAAAACCAGCTGCCAGACCAGAGAAGCCCACCGCCAGACCG
GCTCCCAAGTGAATGAAGCCCCTGTATAGTGAGTACTTTGATGGCTCTTC
CAGCGCGCCGGCAATAAGCACAGCCACCACCAGACCGTAAATGGCAATGA
TACCCGCCATGACCACAGGAATGATGGATTTCATGATCAGTTCAGGCCGC
ATCACTGACATGGCAGCAATACCGGTACCAGACTTAGCAGTGCCATAAGC
AGCGCCCAGGGCCGAGAAGATGATGGCGGAGGCGGCTCCCATAACTCCGA
AGAAGGGGCCATAGATGGGGTTGTCGCTGCTCACTTCAGAAGACATGTCG
ACTGATAACT
BS16279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3161-PA | 480 | Vha16-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
CG3161-PB | 480 | Vha16-RB | 1..480 | 496..17 | 2400 | 100 | Minus |
CG3161-PC | 480 | Vha16-RC | 1..480 | 496..17 | 2400 | 100 | Minus |
CG3161-PD | 480 | Vha16-RD | 1..480 | 496..17 | 2400 | 100 | Minus |
CG6737-PA | 582 | CG6737-RA | 256..314 | 334..276 | 195 | 93.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..571 | 496..16 | 2405 | 100 | Minus |
Vha16-1-RA | 2833 | CG3161-RA | 126..606 | 496..16 | 2405 | 100 | Minus |
Vha16-1-RD | 2816 | CG3161-RD | 109..589 | 496..16 | 2405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627469..6627677 | 16..224 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 6627731..6627922 | 221..412 | 960 | 100 | Plus |
3L | 28110227 | 3L | 11473465..11473885 | 442..16 | 525 | 75.4 | Minus |
2R | 25286936 | 2R | 6632027..6632111 | 412..496 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10736644..10736723 | 276..355 | 265 | 88.8 | Plus |
3L | 28110227 | 3L | 11475385..11475464 | 103..24 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:17:41 has no hits.
BS16279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:00 Download gff for
BS16279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3161-PD | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:24 Download gff for
BS16279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..595 | 9..503 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:31 Download gff for
BS16279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..595 | 9..503 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:31 Download gff for
BS16279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6627463..6627674 | 9..221 | 98 | <- | Plus |
2R | 6627732..6627921 | 222..411 | 100 | <- | Plus |
2R | 6632027..6632117 | 412..503 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:24 Download gff for
BS16279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2514968..2515179 | 9..221 | 98 | <- | Plus |
arm_2R | 2515237..2515426 | 222..411 | 100 | <- | Plus |
arm_2R | 2519532..2519622 | 412..503 | 96 | | Plus |
BS16279.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-05-15
> BS16279.5prime
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAATAAAAGC
TTTCTAGACC
BS16279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3161-PA | 480 | Vha16-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG3161-PB | 480 | Vha16-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG3161-PC | 480 | Vha16-RC | 1..480 | 17..496 | 2400 | 100 | Plus |
CG3161-PD | 480 | Vha16-RD | 1..480 | 17..496 | 2400 | 100 | Plus |
CG6737-PA | 582 | CG6737-RA | 256..314 | 179..237 | 195 | 93.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..571 | 17..497 | 2405 | 100 | Plus |
Vha16-1-RA | 2833 | CG3161-RA | 126..606 | 17..497 | 2405 | 100 | Plus |
Vha16-1-RD | 2816 | CG3161-RD | 109..589 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627469..6627677 | 497..289 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 6627731..6627922 | 292..101 | 960 | 100 | Minus |
3L | 28110227 | 3L | 11473465..11473885 | 71..497 | 525 | 75.4 | Plus |
2R | 25286936 | 2R | 6632027..6632111 | 101..17 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10736644..10736723 | 237..158 | 265 | 88.8 | Minus |
3L | 28110227 | 3L | 11475385..11475464 | 410..489 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:54:17 has no hits.
BS16279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:53 Download gff for
BS16279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3161-PD | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:54 Download gff for
BS16279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..595 | 10..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:29 Download gff for
BS16279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..595 | 10..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:29 Download gff for
BS16279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6627463..6627674 | 292..504 | 98 | <- | Minus |
2R | 6627732..6627921 | 102..291 | 100 | <- | Minus |
2R | 6632027..6632117 | 10..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:54 Download gff for
BS16279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2514968..2515179 | 292..504 | 98 | <- | Minus |
arm_2R | 2515237..2515426 | 102..291 | 100 | <- | Minus |
arm_2R | 2519532..2519622 | 10..101 | 96 | | Minus |
BS16279.complete Sequence
512 bp assembled on 2007-05-07
GenBank Submission: FJ638111
> BS16279.complete
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAATAAAAGC
TTTCTAGACCAT
BS16279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 480 | CG3161-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Vha16-1-RA | 480 | CG3161-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Vha16-1-RD | 480 | CG3161-PD | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..571 | 17..497 | 2405 | 100 | Plus |
Vha16-1-RA | 2833 | CG3161-RA | 126..606 | 17..497 | 2405 | 100 | Plus |
Vha16-1-RD | 2816 | CG3161-RD | 109..589 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627469..6627677 | 497..289 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 6627731..6627922 | 292..101 | 960 | 100 | Minus |
3L | 28110227 | 3L | 11473465..11473885 | 71..497 | 525 | 75.4 | Plus |
2R | 25286936 | 2R | 6632027..6632111 | 101..17 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10736644..10736723 | 237..158 | 265 | 88.8 | Minus |
3L | 28110227 | 3L | 11475385..11475464 | 410..489 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:17:54 has no hits.
BS16279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:10 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RC | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:13 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RA | 158..650 | 10..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:54 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 109..586 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:10 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RA | 158..650 | 10..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:10 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 109..586 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:10 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6627472..6627674 | 292..494 | 100 | <- | Minus |
2R | 6627732..6627921 | 102..291 | 100 | <- | Minus |
2R | 6632027..6632111 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:54 Download gff for
BS16279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2515237..2515426 | 102..291 | 100 | <- | Minus |
arm_2R | 2514977..2515179 | 292..494 | 100 | <- | Minus |
arm_2R | 2519532..2519616 | 17..101 | 100 | | Minus |
BS16279.pep Sequence
Translation from 16 to 495
> BS16279.pep
MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR
PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAG
LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL
IVAIYLYTK*
BS16279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-PB | 159 | CG3161-PB | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PC | 159 | CG3161-PC | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-3-PB | 158 | CG32090-PB | 9..158 | 8..159 | 634 | 86.2 | Plus |