Clone BS16279 Report

Search the DGRC for BS16279

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-1-RA
Protein status:BS16279.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16279.3prime Sequence

510 bp (510 high quality bases) assembled on 2007-05-15

> BS16279.3prime
ATGGTCTAGAAAGCTTTTATTTCGTGTACAGGTAAATGGCCACAATCAAG
CCGTAGAGACCCAACACTTCGGCGAAGATGAGAATCAGGATCATGCCCAC
GAACAGTCTAGGCTGCTGTGCTGTGCCACGGACACCGGCGTCTCCCACGA
TGCCGATCGCAAAACCAGCTGCCAGACCAGAGAAGCCCACCGCCAGACCG
GCTCCCAAGTGAATGAAGCCCCTGTATAGTGAGTACTTTGATGGCTCTTC
CAGCGCGCCGGCAATAAGCACAGCCACCACCAGACCGTAAATGGCAATGA
TACCCGCCATGACCACAGGAATGATGGATTTCATGATCAGTTCAGGCCGC
ATCACTGACATGGCAGCAATACCGGTACCAGACTTAGCAGTGCCATAAGC
AGCGCCCAGGGCCGAGAAGATGATGGCGGAGGCGGCTCCCATAACTCCGA
AGAAGGGGCCATAGATGGGGTTGTCGCTGCTCACTTCAGAAGACATGTCG
ACTGATAACT

BS16279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3161-PA 480 Vha16-RA 1..480 496..17 2400 100 Minus
CG3161-PB 480 Vha16-RB 1..480 496..17 2400 100 Minus
CG3161-PC 480 Vha16-RC 1..480 496..17 2400 100 Minus
CG3161-PD 480 Vha16-RD 1..480 496..17 2400 100 Minus
CG6737-PA 582 CG6737-RA 256..314 334..276 195 93.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..571 496..16 2405 100 Minus
Vha16-1-RA 2833 CG3161-RA 126..606 496..16 2405 100 Minus
Vha16-1-RD 2816 CG3161-RD 109..589 496..16 2405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627469..6627677 16..224 1045 100 Plus
2R 25286936 2R 6627731..6627922 221..412 960 100 Plus
3L 28110227 3L 11473465..11473885 442..16 525 75.4 Minus
2R 25286936 2R 6632027..6632111 412..496 425 100 Plus
2L 23513712 2L 10736644..10736723 276..355 265 88.8 Plus
3L 28110227 3L 11475385..11475464 103..24 205 83.8 Minus
Blast to na_te.dros performed on 2015-02-11 04:17:41 has no hits.

BS16279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:00 Download gff for BS16279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3161-PD 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:24 Download gff for BS16279.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..595 9..503 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:31 Download gff for BS16279.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..595 9..503 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:31 Download gff for BS16279.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6627463..6627674 9..221 98 <- Plus
2R 6627732..6627921 222..411 100 <- Plus
2R 6632027..6632117 412..503 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:24 Download gff for BS16279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2514968..2515179 9..221 98 <- Plus
arm_2R 2515237..2515426 222..411 100 <- Plus
arm_2R 2519532..2519622 412..503 96   Plus

BS16279.5prime Sequence

510 bp (510 high quality bases) assembled on 2007-05-15

> BS16279.5prime
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAATAAAAGC
TTTCTAGACC

BS16279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3161-PA 480 Vha16-RA 1..480 17..496 2400 100 Plus
CG3161-PB 480 Vha16-RB 1..480 17..496 2400 100 Plus
CG3161-PC 480 Vha16-RC 1..480 17..496 2400 100 Plus
CG3161-PD 480 Vha16-RD 1..480 17..496 2400 100 Plus
CG6737-PA 582 CG6737-RA 256..314 179..237 195 93.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..571 17..497 2405 100 Plus
Vha16-1-RA 2833 CG3161-RA 126..606 17..497 2405 100 Plus
Vha16-1-RD 2816 CG3161-RD 109..589 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627469..6627677 497..289 1045 100 Minus
2R 25286936 2R 6627731..6627922 292..101 960 100 Minus
3L 28110227 3L 11473465..11473885 71..497 525 75.4 Plus
2R 25286936 2R 6632027..6632111 101..17 425 100 Minus
2L 23513712 2L 10736644..10736723 237..158 265 88.8 Minus
3L 28110227 3L 11475385..11475464 410..489 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:54:17 has no hits.

BS16279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:17:53 Download gff for BS16279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3161-PD 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:54 Download gff for BS16279.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..595 10..504 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:29 Download gff for BS16279.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..595 10..504 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:29 Download gff for BS16279.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6627463..6627674 292..504 98 <- Minus
2R 6627732..6627921 102..291 100 <- Minus
2R 6632027..6632117 10..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:54 Download gff for BS16279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2514968..2515179 292..504 98 <- Minus
arm_2R 2515237..2515426 102..291 100 <- Minus
arm_2R 2519532..2519622 10..101 96   Minus

BS16279.complete Sequence

512 bp assembled on 2007-05-07

GenBank Submission: FJ638111

> BS16279.complete
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAATAAAAGC
TTTCTAGACCAT

BS16279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 480 CG3161-PB 1..480 17..496 2400 100 Plus
Vha16-1-RA 480 CG3161-PA 1..480 17..496 2400 100 Plus
Vha16-1-RD 480 CG3161-PD 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..571 17..497 2405 100 Plus
Vha16-1-RA 2833 CG3161-RA 126..606 17..497 2405 100 Plus
Vha16-1-RD 2816 CG3161-RD 109..589 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627469..6627677 497..289 1045 100 Minus
2R 25286936 2R 6627731..6627922 292..101 960 100 Minus
3L 28110227 3L 11473465..11473885 71..497 525 75.4 Plus
2R 25286936 2R 6632027..6632111 101..17 425 100 Minus
2L 23513712 2L 10736644..10736723 237..158 265 88.8 Minus
3L 28110227 3L 11475385..11475464 410..489 205 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 10:17:54 has no hits.

BS16279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:10 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RC 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:13 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RA 158..650 10..504 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:54 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 109..586 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:10 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RA 158..650 10..504 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:10 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 109..586 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:10 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6627472..6627674 292..494 100 <- Minus
2R 6627732..6627921 102..291 100 <- Minus
2R 6632027..6632111 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:54 Download gff for BS16279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2515237..2515426 102..291 100 <- Minus
arm_2R 2514977..2515179 292..494 100 <- Minus
arm_2R 2519532..2519616 17..101 100   Minus

BS16279.pep Sequence

Translation from 16 to 495

> BS16279.pep
MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR
PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAG
LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL
IVAIYLYTK*

BS16279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-PB 159 CG3161-PB 1..159 1..159 776 100 Plus
Vha16-1-PA 159 CG3161-PA 1..159 1..159 776 100 Plus
Vha16-1-PD 159 CG3161-PD 1..159 1..159 776 100 Plus
Vha16-1-PC 159 CG3161-PC 1..159 1..159 776 100 Plus
Vha16-3-PB 158 CG32090-PB 9..158 8..159 634 86.2 Plus