Clone Sequence Records
BS16280.3prime Sequence
873 bp (858 high quality bases) assembled on 2007-05-15
> BS16280.3prime
ATGGTCTAGAAAGCTTTTAAATTAGCCTGAGAGCTAATATTGCGAATACA
ATTATTAACAAACTGGCTGCTATACCCGAGACACCGCTGTAGCATCCCAT
GTTGACCATTGACATTATATAACGCCATTGATCAGGGGTCTGGCAAGCAT
CCTGTATACAGGACGTGGTGTTTGATGTAGCTTGGACTGACAAATACAAG
TCTGGACACTGGGTGATAGTATAGTAGCCCTCGCAGGCATTTGAAAGATC
GTAGCTAAAACTATTTCCACTTATTTGTGTGCAACTCTGATCTATCGAGT
TTGTCGTAGAAAGAGTAGTTGAGTTCTGTTGCGGCCATGCATATGTGCGT
GAAGTACATATGGTATAAGTTCCTCCATTCTGTGATTGAATGGTCAAATA
GCGATTCGCACCAGCTCCAAAGAAATAGTTAGAAGAAACTCGATAAAAGT
TCACCTTTCCAGGCCCTACATATTGGGCTGTTTGATCAGTACCCCAGCTA
TTTGTGTACCAAGTTGATCCACAACGTGGATTAATAACGCGACGGGGAAT
TTGGACAATGCGCTTTGCTACGGGTCCCGCTGAAGTCGCCGGTGTACTTC
CCAACGTTAGGGAGAAAAGGTCTTGAGTGGGATCTCGGACAAAGCTTGAA
AACCGCTGAATGCTTCCACCACCATAGTATATAAAACGCAGGTCTGGAAT
TTGTTCCTGAATGTACTGAATTTCAGTAGTGGCATAACTGGAGTCTCCAT
CATTAATGGTTTGCTGATTCGGAATGATTAGAGCTACTAGTGAGTGACCA
CTTAAGCTCGAATTAGTCTTTTCTTCATTCATTAAGTACTGGGTTAGGTT
TTGAATTGTACCCAGCACATTAG
BS16280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-PB | 2592 | CG9380-RB | 1736..2592 | 873..17 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-RE | 2989 | CG9380-RE | 1972..2828 | 873..17 | 4270 | 99.9 | Minus |
| CG9380-RD | 2745 | CG9380-RD | 1728..2584 | 873..17 | 4270 | 99.9 | Minus |
| CG9380-RF | 3550 | CG9380-RF | 2533..3389 | 873..17 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25185287..25185763 | 17..493 | 2385 | 100 | Plus |
| 2R | 25286936 | 2R | 25185932..25186255 | 550..873 | 1605 | 99.7 | Plus |
| 2R | 25286936 | 2R | 25185817..25185876 | 490..549 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:01:34 has no hits.
BS16280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:10 Download gff for
BS16280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-PB | 1736..2592 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:22 Download gff for
BS16280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RF | 2533..3394 | 11..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:26 Download gff for
BS16280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RF | 2533..3394 | 11..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:26 Download gff for
BS16280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25185282..25185762 | 11..492 | 99 | <- | Plus |
| 2R | 25185820..25185876 | 493..549 | 100 | <- | Plus |
| 2R | 25185932..25186255 | 550..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:22 Download gff for
BS16280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 21072805..21073285 | 11..492 | 99 | <- | Plus |
| arm_2R | 21073343..21073399 | 493..549 | 100 | <- | Plus |
| arm_2R | 21073455..21073778 | 550..873 | 99 | | Plus |
BS16280.5prime Sequence
912 bp (839 high quality bases) assembled on 2007-05-15
> BS16280.5prime
GAAGTTATCAGTCGACATGAAACACTCAGTTCAAGCGAGACAGCTGGTAA
AACAAGTTACCACGACGAAAACGAGAACCCTAACCATGAAATTGCAACAA
CTTTTGGCAGCAGTTTGCTGTCTAGCTGCTGCCCTTATCCTGAAAACTAA
GGCACAAGAAAATGCTATGTTGCAAATTCCGCCCTCATTGGTGGAGTGTT
ATAATACGTCATACTTTATGAATCGGGATAATCGTCTACCAGCCAACATG
GACACGCTCATTTCTCTTATCGAAAAAGTAGAAAACAGCTACGCAGCTAG
TTCAGGAGTACAAGCCGATATTCGAACCGTGTCGGTAGCCTTGCTGCATC
GTTTCCGTCAAGATGGCATTAAGAAGGCTGCGGGAATAAATGTGGCTGAC
GGGGTAATACCGTACAGTCCAACAGGCTTTCAGTTTCCAAAGTTAAAAAT
TTTGCTCTCACGTCTTATTCCGGGAAACGCCAATACCTTTCCTAACAGTT
CATTGACGAGAGTGGAGCGGTGCTCCCTCCATTTTATGCTATCAAGCACC
TTTGACACAAGAACGCGCGGCGATGAAAACAATGTGTGCAATCAACTCTC
TCAGTATCGAGCCCAGCGACTGCCGAGATCATTAAAAAAGGAGCATGAAA
ATAATTTTATAAGCGCTTCTGAATGGCTGGAGGCACGCTCGAAACGAGGA
CGATCTTCCGACTCCGTATCAAAATACGAACAATTGGGAGAATTGGACTA
CGAATCCGACTGGGCTTATGCCGGCCCTGAGACTAGCCAATGCCCTGTCG
AGGATGGCCTAGTACGAACACGTTGGGGAACGATATCTGGAGGGACTCTG
ATCGCCGGCATTGCAGCTGGTGTCCAGCAGCAGACTGTGCAACTTAATAC
GCTATTGACCCT
BS16280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-PB | 2592 | CG9380-RB | 1..896 | 17..912 | 4480 | 100 | Plus |
| CG9380-PC | 2622 | CG9380-RC | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-RD | 2745 | CG9380-RD | 1..888 | 25..912 | 4440 | 100 | Plus |
| CG9380-RG | 2668 | CG9380-RG | 1..888 | 25..912 | 4440 | 100 | Plus |
| CG9380-RF | 3550 | CG9380-RF | 837..1693 | 56..912 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25187368..25188225 | 912..55 | 4290 | 100 | Minus |
| 2R | 25286936 | 2R | 25188777..25188816 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:55:49 has no hits.
BS16280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:03 Download gff for
BS16280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-PC | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:16 Download gff for
BS16280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RG | 1..888 | 25..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:46 Download gff for
BS16280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RG | 1..888 | 25..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:46 Download gff for
BS16280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25187368..25188223 | 57..912 | 100 | <- | Minus |
| 2R | 25188777..25188823 | 8..56 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:16 Download gff for
BS16280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 21074891..21075746 | 57..912 | 100 | <- | Minus |
| arm_2R | 21076300..21076346 | 8..56 | 91 | | Minus |
BS16280.complete Sequence
2624 bp assembled on 2009-12-08
GenBank Submission: KX805310
> BS16280.complete
GAAGTTATCAGTCGACATGAAACACTCAGTTCAAGCGAGACAGCTGGTAA
AACAAGTTACCACGACGAAAACGAGAACCCTAACCATGAAATTGCAACAA
CTTTTGGCAGCAGTTTGCTGTCTAGCTGCTGCCCTTATCCTGAAAACTAA
GGCACAAGAAAATGCTATGTTGCAAATTCCGCCCTCATTGGTGGAGTGTT
ATAATACGTCATACTTTATGAATCGGGATAATCGTCTACCAGCCAACATG
GACACGCTCATTTCTCTTATCGAAAAAGTAGAAAACAGCTACGCAGCTAG
TTCAGGAGTACAAGCCGATATTCGAACCGTGTCGGTAGCCTTGCTGCATC
GTTTCCGTCAAGATGGCATTAAGAAGGCTGCGGGAATAAATGTGGCTGAC
GGGGTAATACCGTACAGTCCAACAGGCTTTCAGTTTCCAAAGTTAAAAAT
TTTGCTCTCACGTCTTATTCCGGGAAACGCCAATACCTTTCCTAACAGTT
CATTGACGAGAGTGGAGCGGTGCTCCCTCCATTTTATGCTATCAAGCACC
TTTGACACAAGAACGCGCGGCGATGAAAACAATGTGTGCAATCAACTCTC
TCAGTATCGAGCCCAGCGACTGCCGAGATCATTAAAAAAGGAGCATGAAA
ATAATTTTATAAGCGCTTCTGAATGGCTGGAGGCACGCTCGAAACGAGGA
CGATCTTCCGACTCCGTATCAAAATACGAACAATTGGGAGAATTGGACTA
CGAATCCGACTGGGCTTATGCCGGCCCTGAGACTAGCCAATGCCCTGTCG
AGGATGGCCTAGTACGAACACGTTGGGGAACGATATCTGGAGGGACTCTG
ATCGCCGGCATTGCAGCTGGTGTCCAGCAGCAGACTGTGCAACTTAATAC
GCTATTGACCCTGGCTTCCCAGCGACGCGCTCGTGGTCGTAGTCAGTCCC
AGACAAGCAATACAATTGACAACAGGTGGGCGGCAACTTTGGCTGGGGAG
TTGGCGGAAGTCACGTTGGTCCAACTACCAGTGTCGAATGGCAATCCCGC
TTCCGTTGGGGCTACCGGTGGATGGAATGACACAGTTCTACCCCATTGGT
ACTTCCTATCGCAGCGCAACAACCTTGAGGCAACCGATGCGGAGATTCGC
GGTGGCCTTGATGGTTTAATTTTGGCTAAAAATGTAGCCAGTTGGAGGAC
TCAAGCACCGAGCCTTAAACTTTCTCAACTGCTGCGCATGTATTACTCAA
CAAATGGTGTCCTTAGTTCAGGGATCAATGCCTGCAGTAGGCAAAATCAA
TTCACAAATGTGGCTCCGTCTCAGGAAATGGAGGATCAGACAAATGCGTT
TGCTCTAATATTAGATCGTGAGATGCAGCTGCGTGTCACCCTCCAGCCTT
CCCTTATTTCCCAATTTGCTGGTAACGCCACCGCATCTCTGGTGACGTAT
GTGCCACAATCGTTAAACGATGTATCTTGTATGGCTACTAGTAATCTTGA
CTTGACTGATGCCATAACTCCAATGACTAACCTGTATCTTTTTTTGGATA
CTTCTTGGCAATACAGCACCATTGTTGACTATATAGCTTATGTTATACAG
CAGCTTAATATTCACCCGTATGCCAGCACAATCACAATGCTTTCAGCACA
AGATGGTTCGATTATCGTAAACACCACAAACTATATTACCGATGTCTATC
AACAATGGAATGCAACTACACAGGCAACTTATACTCAGGGATTCAACCTT
CCTAATGTGCTGCGTACAATTCAAAACCTAACCCAGTACTTAATGAATGA
AGAAAAGACTAATTCGAGCTTAAGTGGTCACTCACTAGTAGCTCTAATCA
TTCCGAATCAGCAAACCATTAATGATGGAGACTCCAGTTATGCCACTACT
GAAATTCAGTACATTCAGGAACAAATTCCAGACCTGCGTTTTATATACTA
TGGTGGTGGAAGCATTCAGCGGTTTTCAAGCTTTGTCCGAGATCCCACTC
AAGACCTTTTCTCCCTAACGTTGGGAAGTACACCGGCGACTTCAGCGGGA
CCCGTAGCAAAGCGCATTGTCCAAATTCCCCGTCGCGTTATTAATCCACG
TTGTGGATCAACTTGGTACACAAATAGCTGGGGTACTGATCAAACAGCCC
AATATGTAGGGCCTGGAAAGGTGAACTTTTATCGAGTTTCTTCTAACTAT
TTCTTTGGAGCTGGTGCGAATCGCTATTTGACCATTCAATCACAGAATGG
AGGAACTTATACCATATGTACTTCACGCACATATGCATGGCCGCAACAGA
ACTCAACTACTCTTTCTACGACAAACTCGATAGATCAGAGTTGCACACAA
ATAAGTGGAAATAGTTTTAGCTACGATCTTTCAAATGCCTGCGAGGGCTA
CTATACTATCACCCAGTGTCCAGACTTGTATTTGTCAGTCCAAGCTACAT
CAAACACCACGTCCTGTATACAGGATGCTTGCCAGACCCCTGATCAATGG
CGTTATATAATGTCAATGGTCAACATGGGATGCTACAGCGGTGTCTCGGG
TATAGCAGCCAGTTTGTTAATAATTGTATTCGCAATATTAGCTCTCAGGC
TAATTTAAAAGCTTTCTAGACCAT
BS16280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-RE | 2523 | CG9380-PE | 1..2523 | 86..2608 | 12615 | 100 | Plus |
| CG9380-RD | 2523 | CG9380-PD | 1..2523 | 86..2608 | 12615 | 100 | Plus |
| CG9380-RF | 2523 | CG9380-PF | 1..2523 | 86..2608 | 12615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-RD | 2745 | CG9380-RD | 1..2584 | 25..2608 | 12920 | 100 | Plus |
| CG9380-RF | 3550 | CG9380-RF | 837..3389 | 56..2608 | 12765 | 100 | Plus |
| CG9380-RE | 2989 | CG9380-RE | 277..2828 | 57..2608 | 12760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25186826..25188225 | 1454..55 | 7000 | 100 | Minus |
| 2R | 25286936 | 2R | 25185287..25185763 | 2608..2132 | 2385 | 100 | Minus |
| 2R | 25286936 | 2R | 25185932..25186276 | 2075..1731 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 25186328..25186470 | 1730..1588 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 25186536..25186675 | 1594..1455 | 670 | 98.6 | Minus |
| 2R | 25286936 | 2R | 25185817..25185876 | 2135..2076 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 25188777..25188816 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:50:11 has no hits.
BS16280.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:00 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RB | 22..2611 | 17..2606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:09 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RD | 1..2582 | 25..2606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:58 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RB | 22..2611 | 17..2606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:56 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9380-RD | 1..2582 | 25..2606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:56 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25185289..25185762 | 2133..2606 | 100 | <- | Minus |
| 2R | 25185820..25185876 | 2076..2132 | 100 | <- | Minus |
| 2R | 25185932..25186276 | 1731..2075 | 100 | <- | Minus |
| 2R | 25186328..25186470 | 1588..1730 | 100 | <- | Minus |
| 2R | 25186543..25186675 | 1455..1587 | 100 | <- | Minus |
| 2R | 25186826..25188223 | 57..1454 | 100 | <- | Minus |
| 2R | 25188777..25188816 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:09 Download gff for
BS16280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 21072812..21073285 | 2133..2606 | 100 | <- | Minus |
| arm_2R | 21073343..21073399 | 2076..2132 | 100 | <- | Minus |
| arm_2R | 21073455..21073799 | 1731..2075 | 100 | <- | Minus |
| arm_2R | 21073851..21073993 | 1588..1730 | 100 | <- | Minus |
| arm_2R | 21074066..21074198 | 1455..1587 | 100 | <- | Minus |
| arm_2R | 21074349..21075746 | 57..1454 | 100 | <- | Minus |
| arm_2R | 21076300..21076339 | 17..56 | 100 | | Minus |
BS16280.pep Sequence
Translation from 16 to 2607
> BS16280.pep
MKHSVQARQLVKQVTTTKTRTLTMKLQQLLAAVCCLAAALILKTKAQENA
MLQIPPSLVECYNTSYFMNRDNRLPANMDTLISLIEKVENSYAASSGVQA
DIRTVSVALLHRFRQDGIKKAAGINVADGVIPYSPTGFQFPKLKILLSRL
IPGNANTFPNSSLTRVERCSLHFMLSSTFDTRTRGDENNVCNQLSQYRAQ
RLPRSLKKEHENNFISASEWLEARSKRGRSSDSVSKYEQLGELDYESDWA
YAGPETSQCPVEDGLVRTRWGTISGGTLIAGIAAGVQQQTVQLNTLLTLA
SQRRARGRSQSQTSNTIDNRWAATLAGELAEVTLVQLPVSNGNPASVGAT
GGWNDTVLPHWYFLSQRNNLEATDAEIRGGLDGLILAKNVASWRTQAPSL
KLSQLLRMYYSTNGVLSSGINACSRQNQFTNVAPSQEMEDQTNAFALILD
REMQLRVTLQPSLISQFAGNATASLVTYVPQSLNDVSCMATSNLDLTDAI
TPMTNLYLFLDTSWQYSTIVDYIAYVIQQLNIHPYASTITMLSAQDGSII
VNTTNYITDVYQQWNATTQATYTQGFNLPNVLRTIQNLTQYLMNEEKTNS
SLSGHSLVALIIPNQQTINDGDSSYATTEIQYIQEQIPDLRFIYYGGGSI
QRFSSFVRDPTQDLFSLTLGSTPATSAGPVAKRIVQIPRRVINPRCGSTW
YTNSWGTDQTAQYVGPGKVNFYRVSSNYFFGAGANRYLTIQSQNGGTYTI
CTSRTYAWPQQNSTTLSTTNSIDQSCTQISGNSFSYDLSNACEGYYTITQ
CPDLYLSVQATSNTTSCIQDACQTPDQWRYIMSMVNMGCYSGVSGIAASL
LIIVFAILALRLI*
BS16280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9380-PE | 840 | CG9380-PE | 1..840 | 24..863 | 4333 | 100 | Plus |
| CG9380-PD | 840 | CG9380-PD | 1..840 | 24..863 | 4333 | 100 | Plus |
| CG9380-PF | 840 | CG9380-PF | 1..840 | 24..863 | 4333 | 100 | Plus |
| CG9380-PG | 850 | CG9380-PG | 1..831 | 24..859 | 3046 | 72 | Plus |
