Clone Sequence Records
BS16282.complete Sequence
2570 bp assembled on 2009-12-07
GenBank Submission: KX804434
> BS16282.complete
GAAGTTATCAGTCGACATGTCTAGCCCACATATCAACTACCGCTCCCTGG
CCGAGGAGGCGGCCAGTCCGTTCCTGGAGCACCATCCCTCCACAGGCCAA
GGCCCATCCAAAACACAAGACGCAAAAGCGAACGCAGCTGCTGCGCATTT
AGACCCCCTCGGTGAACACGGGCTGGAGCAGCCGCTGGATGAGCACGACA
CCGAGCATGAGGGCGAGGACACGCCTCGAAACAGTGGCGTCATGATCCAC
ATGGTTCCGGAGACGGGGCGTGCGCGGTGGAACCACATCGAGGACCTTGA
CTCGTTCTTCTCGCGAATGTATCAGTACCAGCAGAAGCACGGATTCACAG
TGATTGTAGTGGACGAAATGCTACAGGTTCTGGAGTTTGGTTTCGTCGTC
TGGCTACTTGCCTTTGTGATGCACTGCGTCCGATTTGACGTGCTCTTTGG
GGACACCCCTCCAGGGGGACTTAACCCCAACAAGACAACTTTATCCGATG
TGATGTACCCCACAGGCGAGTGCTTAGCCAACTTCACTTGGGTCACGTAC
CTGGTTGTGTTCATAGCCGCTATCTATTTGGGCATAAGGCTTCTGAAAAT
GGTGTACCATATTACCCAGTACGCCGATATAAAGAGATTCTACAACTCTG
CGCTTCATATCGAGGATTCGGATCTGGACAACTTTACGTGGCACGAGGTG
CAACAGCGGATTCGTCGCGTCCAGGCCGAACAGCATATGTGCATCGACAA
GGAGTCGCTTACGGAATTGGACATCTATCACCGAGTTCTGCGCTTCAAGA
ACTACCTAGTGGCACTGATGAACAAGCAACTGCTGCCTGTAAGGTTCCAC
ATACCGCTGTATGGCGAAGTGGTCTCGCTGAGTAGAGGTATGTTGTTCAA
CATTGACTTCATCTTGTTTCGCGGCCCTGGATCTCCCTTCCAGAACAATT
GGCAGCTGCGTGATGAGTTTGCGGTAAGAAGCAATCAAACGGAGCTGGCG
CAGCGACTCTCCAAACTGATATTGGGGGTGGCGTTGTTAAATTTGGTCCT
AGCGCCTGTGATCTTCGTATGGCAACTTATCTACTTCAGTTTCTCCTATG
CGAACATTCTTCGTAAGGAGCCTGGTGCCCTTGGCCTGCGTACATGGTCC
AATTACGGCCGCCTCTACCTGCGCCACTTTAATGAACTGGACCACGAACT
AGATGCCAGGCTGAATCGGGCATATGACTACGCGGACCGCTATCTCAACT
CCTTTTCCTCGCCACTGGCCGCTGTGATAGCCAAAAACCTACTCTTTATC
AGTGGAGGACTACTACTTCTAATCCTTGCATTGGGCATTTACGAGGAACA
CGTCTTCCAGGTGGAGCATTTGCTTGCCATCCTTGCAGGGCTCGGCGCCA
TAGGTGTGGTCTGCAGAACTCTAATACCGGATGAGAATCTCGTTTGGTGC
CCAGAGCAGCTAATGACCGCCATTCTGGCGCACGTTCACTACCTGCCCTC
CGAGTGGCGGCAGCAGGCGCACACGACAAAGGTTCGCCAGGAGTTTAGCA
ACTTCTTTCAGTTTAAGGCTGGCTACCTACTCAGCGAAATCTTCAGTCCC
TTCGTCACACCCTTCGTGCTGATCTTTGTGTTCAGGCCAAAGGCCATAGA
GCTGGTGCGTTTCTTCAGGACGTTCACCGTATCCGTGCGAGGAGTGGGCA
ACGTATGCTCCTTTGCCCAGATGGATGTTCGCAAGCATGGCAATCCCGAC
TGGCAGTTAACCAGCGAACTGGAGGAGATGACCCGGGCTACAGCTCAACA
GCCGCAGCAGGAGCCACAGCAGCAAAGTTTGGCCGGCGGCAAAACGGAGA
TGTCGCTTCTTCGCTTCACCCTGAACAATCCCGAGTGGCAGATGCCCAAG
GAGGCCAAGCAGTTCCTGCGCGGCGTTAGAGAGCACGCCGTTGGTGAACT
AGTCCAGGCCAAGACGTCGATGGTGCAGGAGAACCCGCTGACCAACAGCC
TCATCTCATTTGGCACCATGGGAGCGGATTATTGTTCCATTGCGAACTCT
GTGCTGACCGCACAGGTGACGCCCCAGCAACTGGAGATTTCGCAGTCGTT
GCGTCCGGGTCTAGGACCGGTATCTGGAGGATTCCCCGTCGCAGCCAGCG
ACTTCCGCCAGATGTTGCAGCAGAATCTGTCCGCCAGTGTCGGCCCGCTG
GACAGCATGCGCCGATTGCGCCTCAGCCGGGCTGAAGGCCGCTTGGAGGG
TCCGACGGATACACTGCTCTACGGACTCTGTGGTGTGGACCCGCGCGTGG
GCAGCACTCCCTTGAATGTGGGCGTGGCCGACATGTGCCTCAGTGCCCTC
TATTTGCACGAGCTGAACCAGCAGAAGCGCCAAGCGCGCCAGTCTCGCAT
CGACGAGGCCGAGGACGAGCGTCCTGGTACGAGCCATTGGCCACCGCGAC
CACCAGCTGCTCCGTCGGCTGATACTGGCTTCGGCTCCCGCCATACCGTG
ATTACCTCAAAGGCTGCCGAGAGCACGCCGCTTTTGGGTAGCATCCGCTC
ATAGAAGCTTTCTAGACCAT
BS16282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg9-RB | 2559 | CG3615-PB | 1..2542 | 17..2558 | 12695 | 100 | Plus |
| Atg9-RA | 2538 | CG3615-PA | 1..2538 | 17..2554 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg9-RB | 2833 | CG3615-RB | 122..2663 | 17..2558 | 12695 | 100 | Plus |
| Atg9-RA | 2833 | CG3615-RA | 122..2663 | 17..2558 | 12695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16294521..16297062 | 17..2558 | 12695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:16 has no hits.
BS16282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:52 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 1..2538 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:50 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 120..2657 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:48 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 122..2659 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:52 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 118..2661 | 13..2558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:12 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 122..2659 | 17..2554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:12 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16294521..16297058 | 17..2554 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:48 Download gff for
BS16282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12182026..12184563 | 17..2554 | 100 | | Plus |
BS16282.3prime Sequence
857 bp (765 high quality bases) assembled on 2007-05-15
> BS16282.3prime
ATGGNCTAGAAAGCTGCTACGTGCGGAGGCTACCCAAAAGCGGCGTGCTC
TCGGCAGCCTTTGAGGTAATCACGGTATGGCGGGAGCCGAAGCCAGTATC
AGCCGACGGAGCAGCTGGTGGTCGCGGTGGCCAATGGCTCGTACCAGGAC
GCTCGTCCTCGGCCTCGTCGATGCGAGACTGGCGCGCTTGGCGCTTCTGC
TGGTTCAGCTCGTGCAAATAGAGGGCACTGAGGCACATGTCGGCCACGCC
CACATTCAAGGGAGTGCTGCCCACGCGCGGGTCCACACCACAGAGTCCGT
AGAGCAGTGTATCCGTCGGACCCTCCAAGCGGCCTTCAGCCCGGCTGAGG
CGCAATCGGCGCATGCTGTCCAGCGGGCCGACACTGGCGGACAGATTCTG
CTGCAACATCTGGCGGAAGTCGCTGGCTGCGACGGGGAATCCTCCAGATA
CCGGTCCTAGACCCGGACGCAACGACTGCGAAATCTCCAGTTGCTGGGGC
GTCACCTGTGCGGTCAGCACAGAGTTCGCAATGGAACAATAATCCGCTCC
CATGGTGCCAAATGAGATGAGGCTGTTGGTCAGCGGGTTCTCCTGCACCA
TCGACGTCTTGGCCTGGACTAGTTCACCAACGGCGTGCTCTCTAACGCCG
CGCAGGAACTGCTTGGCCTCCTTGGGCATCTGCCACTCGGGATTGTTCAG
GGTGAAGCGAAGAAGCGACATCTCCGTTTTGCCGCCGGCCAAACTTTGCT
GCTGTGGCTCCTGCTGCGGCTGTTGAGCTGTAACCCGGGTCATCTCCTCC
AGTTCGCTGGTTAACTGCCAGTCGGGATTGCCATGCTTGCGAACATCCAT
CTGGGCA
BS16282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3615-PA | 2538 | Atg9-RA | 1698..2532 | 857..23 | 4125 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg9-RB | 2833 | CG3615-RB | 1819..2663 | 857..13 | 4165 | 99.5 | Minus |
| Atg9-RA | 2833 | CG3615-RA | 1819..2663 | 857..13 | 4165 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16296218..16297062 | 857..13 | 4165 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:31:36 has no hits.
BS16282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:24 Download gff for
BS16282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3615-PA | 1699..2538 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:15 Download gff for
BS16282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 1820..2663 | 13..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:14 Download gff for
BS16282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 1820..2663 | 13..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:14 Download gff for
BS16282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16296219..16297062 | 13..856 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:15 Download gff for
BS16282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12183724..12184567 | 13..856 | 99 | | Minus |
BS16282.5prime Sequence
867 bp (777 high quality bases) assembled on 2007-05-15
> BS16282.5prime
GAAGTTATCAGTCGACATGTCTAGCCCACATATCAACTACCGCTCCCTGG
CCGAGGAGGCGGCCAGTCCGTTCCTGGAGCACCATCCCTCCACAGGCCAA
GGCCCATCCAAAACACAAGACGCAAAAGCGAACGCAGCTGCTGCGCATTT
AGACCCCCTCGGTGAACACGGGCTGGAGCAGCCGCTGGATGAGCACGACA
CCGAGCATGAGGGCGAGGACACGCCTCGAAACAGTGGCGTCATGATCCAC
ATGGTTCCGGAGACGGGGCGTGCGCGGTGGAACCACATCGAGGACCTTGA
CTCGTTCTTCTCGCGAATGTATCAGTACCAGCAGAAGCACGGATTCACAG
TGATTGTAGTGGACGAAATGCTACAGGTTCTGGAGTTTGGTTTCGTCGTC
TGGCTACTTGCCTTTGTGATGCACTGCGTCCGATTTGACGTGCTCTTTGG
GGACACCCCTCCAGGGGGACTTAACCCCAACAAGACAACTTTATCCGATG
TGATGTACCCCACAGGCGAGTGCTTAGCCAACTTCACTTGGGTCACGTAC
CTGGTTGTGTTCATAGCCGCTATCTATTTGGGCATAAGGCTTCTGAAAAT
GGTGTACCATATTACCCAGTACGCCGATATAAAGAGATTCTACAACTCTG
CGCTTCATATCGAGGATTCGGATCTGGACAACTTTACGTGGCACGAGGTG
CAACAGCGGATTCGTCGCGTCCAGGCCGAACAGCATATGTGCATCGACAA
GGAGTCGCTTACGGAATTGGACATCTATCAACGAGTTCTGCGCTTCAAGA
ACTACCTAGTGGCACTGATGAACAAGCAACTGCTGCCTGTAAGGTTTCAC
ATACCGCTGTATGGCGA
BS16282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3615-PA | 2538 | Atg9-RA | 1..851 | 17..867 | 4205 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg9-RB | 2833 | CG3615-RB | 122..972 | 17..867 | 4225 | 99.8 | Plus |
| Atg9-RA | 2833 | CG3615-RA | 122..972 | 17..867 | 4225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16294521..16295371 | 17..867 | 4225 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:58:23 has no hits.
BS16282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:07 Download gff for
BS16282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3615-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:21 Download gff for
BS16282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 120..971 | 13..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:33 Download gff for
BS16282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg9-RA | 120..971 | 13..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:33 Download gff for
BS16282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16294519..16295370 | 13..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:21 Download gff for
BS16282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12182024..12182875 | 13..866 | 99 | | Plus |
BS16282.pep Sequence
Translation from 16 to 2553
> BS16282.pep
MSSPHINYRSLAEEAASPFLEHHPSTGQGPSKTQDAKANAAAAHLDPLGE
HGLEQPLDEHDTEHEGEDTPRNSGVMIHMVPETGRARWNHIEDLDSFFSR
MYQYQQKHGFTVIVVDEMLQVLEFGFVVWLLAFVMHCVRFDVLFGDTPPG
GLNPNKTTLSDVMYPTGECLANFTWVTYLVVFIAAIYLGIRLLKMVYHIT
QYADIKRFYNSALHIEDSDLDNFTWHEVQQRIRRVQAEQHMCIDKESLTE
LDIYHRVLRFKNYLVALMNKQLLPVRFHIPLYGEVVSLSRGMLFNIDFIL
FRGPGSPFQNNWQLRDEFAVRSNQTELAQRLSKLILGVALLNLVLAPVIF
VWQLIYFSFSYANILRKEPGALGLRTWSNYGRLYLRHFNELDHELDARLN
RAYDYADRYLNSFSSPLAAVIAKNLLFISGGLLLLILALGIYEEHVFQVE
HLLAILAGLGAIGVVCRTLIPDENLVWCPEQLMTAILAHVHYLPSEWRQQ
AHTTKVRQEFSNFFQFKAGYLLSEIFSPFVTPFVLIFVFRPKAIELVRFF
RTFTVSVRGVGNVCSFAQMDVRKHGNPDWQLTSELEEMTRATAQQPQQEP
QQQSLAGGKTEMSLLRFTLNNPEWQMPKEAKQFLRGVREHAVGELVQAKT
SMVQENPLTNSLISFGTMGADYCSIANSVLTAQVTPQQLEISQSLRPGLG
PVSGGFPVAASDFRQMLQQNLSASVGPLDSMRRLRLSRAEGRLEGPTDTL
LYGLCGVDPRVGSTPLNVGVADMCLSALYLHELNQQKRQARQSRIDEAED
ERPGTSHWPPRPPAAPSADTGFGSRHTVITSKAAESTPLLGSIRS*
BS16282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg9-PB | 852 | CG3615-PB | 1..845 | 1..845 | 4412 | 100 | Plus |
| Atg9-PA | 845 | CG3615-PA | 1..845 | 1..845 | 4412 | 100 | Plus |
