Clone Sequence Records
BS16288.complete Sequence
2192 bp assembled on 2009-12-08
GenBank Submission: KX805725
> BS16288.complete
GAAGTTATCAGTCGACATGCTTAAGCTTGTGCAATACATAGCCCCCCGGG
TGGGCGGCGCCACGCCCCGACCGACTGCCTGCGGCTGGGGCAACTTGCTA
TTGATTTCCCCGAGAAGTGGCGCGAGCTCCGAGAAATGTATAACGCAACG
TCGCCATTTTCTTTTCTCCTCCGCCAGCAGCAGCGGCACTTTCGCTTCTT
CTTCTTCGCTCTGCACCGAACAACGACAACAGTTCCACGGGAGTCGCAGG
AATCGTGAGACAATACTGTTCCCAAGCACATATAGTAGTCTCCAAGCTCA
GTCGCAGCGTGCGTTTCGAGACAGCTCGAAACCAGATTCAGACGACTACG
TAGATTCCATCCCGAAAGCAGAGCAGCGGACGAGGACGAGGAAATCGCTT
TTCAACGATCCCGACGAAAGAACTGAGGAAATCAAAATTGAAGGAGTAAT
GGCACCACACGATCGCGACTTTGGTCACAGTGGACGTGGCGGTCGCGGAG
GCGATCGAGGCGGCGATGATCGGCGAGGAGGCGGCGGCGGAGGCAATCGC
TTCGGTGGCGGCGGTGGCGGTGGCGATTACCACGGCATAAGGAATGGACG
CGTCGAGAAGCGACGCGATGACCGCGGAGGCGGCAACCGATTTGGAGGTG
GTGGTGGATTCGGGGATCGCCGAGGAGGAGGTGGCGGCGGCAGCCAAGAC
CTCCCCATGCGTCCGGTCGACTTCTCCAACCTGGCTCCCTTCAAGAAGAA
CTTTTACCAGGAGCACCCTAACGTAGCAAACCGATCGCCCTACGAAGTTC
AGAGGTATCGCGAAGAGCAGGAGATCACCGTGCGCGGACAGGTGCCGAAC
CCCATCCAGGACTTCTCCGAGGTCCATCTGCCCGACTACGTCATGAAGGA
GATCCGCCGACAGGGCTACAAGGCCCCCACCGCTATCCAAGCGCAGGGCT
GGCCTATCGCCATGAGTGGCTCGAACTTCGTCGGCATTGCCAAGACGGGA
TCCGGAAAGACCCTGGGCTACATCCTGCCCGCTATTGTCCACATCAACAA
CCAGCAGCCGCTGCAGAGGGGCGACGGACCTATCGCCCTCGTGCTGGCCC
CCACTCGGGAGCTGGCCCAACAGATCCAGCAGGTGGCCACCGAATTCGGT
TCCTCGTCGTATGTTCGCAACACCTGCGTCTTCGGCGGCGCCCCGAAGGG
CGGCCAAATGCGGGATCTGCAGCGCGGCTGCGAGATCGTCATTGCCACAC
CCGGACGTCTTATTGATTTCCTCTCCGCCGGCTCTACTAACCTGAAGCGT
TGCACCTACTTGGTGCTGGACGAGGCCGATCGCATGTTAGACATGGGCTT
CGAGCCCCAGATCAGAAAGATCGTCTCACAGATCCGGCCCGACCGACAGA
CGCTCATGTGGAGCGCTACCTGGCCCAAGGAGGTCAAGCAGCTTGCCGAG
GACTTTTTGGGCAACTACATCCAGATCAACATTGGATCGCTGGAGCTGTC
CGCCAATCACAACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCA
AGGAGGAGAAATTGAAGACCCTCCTGTCAGACATCTACGACACCAGCGAG
AGCCCCGGCAAGATTATCATATTCGTGGAGACAAAGCGACGCGTGGACAA
CCTGGTGCGCTTCATCCGCAGCTTCGGAGTCCGTTGTGGAGCTATTCACG
GTGACAAGTCGCAATCAGAACGAGACTTTGTGCTCCGTGAGTTCCGCTCG
GGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGACTAGA
CGTGGACGGCATCAAGTATGTCATCAACTTTGACTACCCGCAAAACAGCG
AGGACTACATCCATCGCATCGGTCGCACAGGACGATCCAACACAAAGGGC
ACCTCTTTCGCCTTCTTCACCAAGAACAATGCCAAGCAAGCCAAGGCGCT
GGTCGACGTACTCCGAGAAGCTAATCAGGAAATCAATCCTGCCCTGGAAA
ATCTGGCCCGCAACTCGCGCTACGACGGTGGCGGCGGACGCTCCCGTTAT
GGAGGCGGTGGCGGCGGCGGTCGCTTCGGCGGCGGCGGCTTCAAGAAGGG
CAGCCTGAGCAACGGACGAGGCTTCGGAGGAGGCGGCGGCGGCGGCGGCG
AAGGCAGACACTCGCGCTTCGACTAGAAGCTTTCTAGACCAT
BS16288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RA | 2160 | CG10279-PA | 1..2160 | 17..2176 | 10800 | 100 | Plus |
| Rm62-RH | 1728 | CG10279-PH | 1..1728 | 449..2176 | 8640 | 100 | Plus |
| Rm62-RF | 1737 | CG10279-PF | 10..1737 | 449..2176 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RA | 2995 | CG10279-RA | 104..2264 | 17..2177 | 10805 | 100 | Plus |
| Rm62-RH | 2760 | CG10279-RH | 28..2029 | 176..2177 | 10010 | 100 | Plus |
| Rm62-RD | 2757 | CG10279-RD | 28..2026 | 179..2177 | 9995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004017..6005126 | 1560..451 | 5550 | 100 | Minus |
| 3R | 32079331 | 3R | 6008036..6008470 | 451..17 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 6003673..6003911 | 1799..1561 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 6001162..6001365 | 2177..1974 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 6001557..6001739 | 1979..1797 | 915 | 100 | Minus |
| X | 23542271 | X | 7928923..7929222 | 1522..1223 | 420 | 76 | Minus |
| X | 23542271 | X | 7929323..7929525 | 1128..926 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:28:06 has no hits.
BS16288.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:21 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..2263 | 17..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:52 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..2263 | 17..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:17 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..2263 | 17..2176 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:04 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..2263 | 17..2176 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:04 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6001163..6001360 | 1979..2176 | 100 | <- | Minus |
| 3R | 6001558..6001736 | 1800..1978 | 100 | <- | Minus |
| 3R | 6003673..6003911 | 1561..1799 | 100 | <- | Minus |
| 3R | 6004017..6005126 | 451..1560 | 100 | <- | Minus |
| 3R | 6008037..6008470 | 17..450 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:52 Download gff for
BS16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1826885..1827082 | 1979..2176 | 100 | <- | Minus |
| arm_3R | 1827280..1827458 | 1800..1978 | 100 | <- | Minus |
| arm_3R | 1829395..1829633 | 1561..1799 | 100 | <- | Minus |
| arm_3R | 1829739..1830848 | 451..1560 | 100 | <- | Minus |
| arm_3R | 1833759..1834192 | 17..450 | 100 | | Minus |
BS16288.3prime Sequence
898 bp (816 high quality bases) assembled on 2007-05-15
> BS16288.3prime
ATGGTCTAGAAAGCTTCTAGTCGAAGCGCGAGTGTCTGCCTTCGCCGCCG
CCGCCGCCGCCTCCTCCGAAGCCTCGTCCGTTGCTCAGGCTGCCCTTCTT
GAAGCCGCCGCCGCCGAAGCGACCGCCGCCGCCACCGCCTCCATAACGGG
AGCGTCCGCCGCCACCGTCGTAGCGCGAGTTGCGGGCCAGATTTTCCAGG
GCAGGATTGATTTCCTGATTAGCTTCTCGGAGTACGTCGACCAGCGCCTT
GGCTTGCTTGGCATTGTTCTTGGTGAAGAAGGCGAAAGAGGTGCCCTTTG
TGTTGGATCGTCCTGTGCGACCGATGCGATGGATGTAGTCCTCGCTGTTT
TGCGGGTAGTCAAAGTTGATGACATACTTGATGCCGTCCACGTCTAGTCC
ACGGGCCGCCACATCGGTGGCCACCAGAATGTTGGACTTGCCCGAGCGGA
ACTCACGGAGCACAAAGTCTCGTTCTGATTGCGACTTGTCACCGTGAATA
GCTCCACAACGGACTCCGAAGCTGCGGATGAAGCGCACCAGGTTGTCCAC
GCGTCGCTTTGTCTCCACGAATATGATAATCTTGCCGGGGCTCTCGCTGG
TGTCGTAGATGTCTGACAGGAGGGTCTTCAATTTCTCCTCCTTGCTGAAC
TCGTCACAAACGTCCACCACCTGGCGGATGTTGTGATTGGCGGACAGCTC
CAGCGATCCAATGTTGATCTGGATGTAGTTGCCCAAAAAGTCCTCGGCAA
GCTGCTTGACCTCCTTGGGCCAGGTAGCGCTCCACATGAGCGTCTGTCGG
TCGGGCCGGATCTGTGAGACGATCTTTCTGATCTGGGGCTCGAAGCCCAT
GTCTAACATGCGATCGGCCTCGTCCAGCACCAAGTAGGTGCAACGCTT
BS16288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10279-PC | 1737 | Rm62-RC | 856..1737 | 898..17 | 4410 | 100 | Minus |
| CG10279-PD | 1728 | Rm62-RD | 847..1728 | 898..17 | 4410 | 100 | Minus |
| CG10279-PB | 1737 | Rm62-RB | 856..1737 | 898..17 | 4410 | 100 | Minus |
| CG10279-PA | 2160 | Rm62-RA | 1279..2160 | 898..17 | 4410 | 100 | Minus |
| CG10279-PE | 1737 | Rm62-RE | 856..1737 | 898..17 | 4410 | 100 | Minus |
| CG10279-PF | 1737 | Rm62-RF | 856..1737 | 898..17 | 4410 | 100 | Minus |
| CG10077-PA | 2457 | CG10077-RA | 923..984 | 882..821 | 210 | 93.5 | Minus |
| CG10077-PB | 474 | CG10077-RB | 7..39 | 853..821 | 165 | 100 | Minus |
| CG6227-PA | 3675 | CG6227-RA | 1997..2036 | 876..837 | 150 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RH | 2760 | CG10279-RH | 1147..2029 | 898..16 | 4415 | 100 | Minus |
| Rm62-RI | 3153 | CG10279-RI | 1535..2417 | 898..16 | 4415 | 100 | Minus |
| Rm62-RF | 2833 | CG10279-RF | 1220..2102 | 898..16 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004017..6004282 | 633..898 | 1330 | 100 | Plus |
| 3R | 32079331 | 3R | 6003673..6003911 | 394..632 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 6001162..6001365 | 16..219 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 6001557..6001739 | 214..396 | 915 | 100 | Plus |
| 3L | 28110227 | 3L | 6954023..6954265 | 650..892 | 495 | 80.2 | Plus |
| X | 23542271 | X | 7928923..7929144 | 671..892 | 375 | 77.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:19:13 has no hits.
BS16288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:39 Download gff for
BS16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10279-PB | 856..1737 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:56 Download gff for
BS16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RF | 1220..2102 | 16..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:56 Download gff for
BS16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RF | 1220..2102 | 16..898 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:56 Download gff for
BS16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6003673..6003911 | 394..632 | 100 | <- | Plus |
| 3R | 6004017..6004282 | 633..898 | 100 | | Plus |
| 3R | 6001162..6001360 | 16..214 | 100 | <- | Plus |
| 3R | 6001558..6001736 | 215..393 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:56 Download gff for
BS16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1826884..1827082 | 16..214 | 100 | <- | Plus |
| arm_3R | 1827280..1827458 | 215..393 | 100 | <- | Plus |
| arm_3R | 1829395..1829633 | 394..632 | 100 | <- | Plus |
| arm_3R | 1829739..1830004 | 633..898 | 100 | | Plus |
BS16288.5prime Sequence
775 bp (743 high quality bases) assembled on 2007-05-15
> BS16288.5prime
GAAGTTATCAGTCGACATGCTTAAGCTTGTGCAATACATAGCCCCCCGGG
TGGGCGGCGCCACGCCCCGACCGACTGCCTGCGGCTGGGGCAACTTGCTA
TTGATTTCCCCGAGAAGTGGCGCGAGCTCCGAGAAATGTATAACGCAACG
TCGCCATTTTCTTTTCTCCTCCGCCAGCAGCAGCGGCACTTTCGCTTCTT
CTTCTTCGCTCTGCACCGAACAACGACAACAGTTCCACGGGAGTCGCAGG
AATCGTGAGACAATACTGTTCCCAAGCACATATAGTAGTCTCCAAGCTCA
GTCGCAGCGTGCGTTTCGAGACAGCTCGAAACCAGATTCAGACGACTACG
TAGATTCCATCCCGAAAGCAGAGCAGCGGACGAGGACGAGGAAATCGCTT
TTCAACGATCCCGACGAAAGAACTGAGGAAATCAAAATTGAAGGAGTAAT
GGCACCACACGATCGCGACTTTGGTCACAGTGGACGTGGCGGTCGCGGAG
GCGATCGAGGCGGCGATGATCGGCGAGGAGGCGGCGGCGGAGGCAATCGC
TTCGGTGGCGGCGGTGGCGGTGGCGATTACCACGGCATAAGGAATGGACG
CGTCGAGAAGCGACGCGATGACCGCGGAGGCGGCAACCGATTTGGAGGTG
GTGGTGGATTCGGGGATCGCCGAGGAGGAGGTGGCGGCGGCAGCCAAGAC
CTCCCCATGCGTCCGGTCGACTTCTCCAACCTGGCTCCCTTCAAGAAGAA
CTTTTACCAGGAGCACCCTAACGTA
BS16288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10279-PA | 2160 | Rm62-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
| CG10279-PC | 1737 | Rm62-RC | 10..336 | 449..775 | 1635 | 100 | Plus |
| CG10279-PD | 1728 | Rm62-RD | 1..327 | 449..775 | 1635 | 100 | Plus |
| CG10279-PB | 1737 | Rm62-RB | 10..336 | 449..775 | 1635 | 100 | Plus |
| CG10279-PF | 1737 | Rm62-RF | 10..336 | 449..775 | 1635 | 100 | Plus |
| CG10279-PE | 1737 | Rm62-RE | 12..336 | 451..775 | 1625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RA | 2995 | CG10279-RA | 104..862 | 17..775 | 3795 | 100 | Plus |
| Rm62-RH | 2760 | CG10279-RH | 28..627 | 176..775 | 3000 | 100 | Plus |
| Rm62-RM | 3411 | CG10279-RM | 23..619 | 179..775 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6008036..6008470 | 451..17 | 2175 | 100 | Minus |
| 3R | 32079331 | 3R | 6004802..6005126 | 775..451 | 1625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:55:37 has no hits.
BS16288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:17 Download gff for
BS16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10279-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:43 Download gff for
BS16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..861 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:57 Download gff for
BS16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 104..861 | 17..774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:57 Download gff for
BS16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6004803..6005126 | 451..774 | 100 | <- | Minus |
| 3R | 6008037..6008470 | 17..450 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:43 Download gff for
BS16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1830525..1830848 | 451..774 | 100 | <- | Minus |
| arm_3R | 1833759..1834192 | 17..450 | 100 | | Minus |
BS16288.pep Sequence
Translation from 16 to 2175
> BS16288.pep
MLKLVQYIAPRVGGATPRPTACGWGNLLLISPRSGASSEKCITQRRHFLF
SSASSSGTFASSSSLCTEQRQQFHGSRRNRETILFPSTYSSLQAQSQRAF
RDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDPDERTEEIKIEGVMAPHDR
DFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRR
DDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFKKNFYQEH
PNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQG
YKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ
RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRD
LQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIR
KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNI
RQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFI
RSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIK
YVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLR
EANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKKGSLSNG
RGFGGGGGGGGEGRHSRFD*
BS16288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-PA | 719 | CG10279-PA | 1..719 | 1..719 | 3784 | 100 | Plus |
| Rm62-PF | 578 | CG10279-PF | 3..578 | 144..719 | 3047 | 99.8 | Plus |
| Rm62-PB | 578 | CG10279-PB | 3..578 | 144..719 | 3047 | 99.8 | Plus |
| Rm62-PC | 578 | CG10279-PC | 3..578 | 144..719 | 3047 | 99.8 | Plus |
| Rm62-PH | 575 | CG10279-PH | 1..575 | 145..719 | 3046 | 100 | Plus |
