Clone Sequence Records
BS16289.complete Sequence
2153 bp assembled on 2009-12-07
GenBank Submission: KX803485
> BS16289.complete
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGG
ATGTGCTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATG
GGCAAGTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCC
GCGAGTGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATA
ACTACGAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACC
TTCAAGGCTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCG
GCAGCAGTTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGG
ATATTTACAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTAC
ATTCCGCAGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTG
CACGATTGATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCA
CACTCCAGAGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAA
CTGGGTCCCAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAG
GAACTTCAACGAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGA
TGATCAACGCTGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTC
AAGCCGGACATGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTT
CAAACGGCTGTCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCC
TGTCCGAACGCGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATG
CGGGAGAACAAGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGA
CTTTTACTTCCAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCG
TAATCGCGGCCAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAG
AAGGTGTTCCGGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTC
ATGCGGTACATACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGC
CAGCCAAGTCTGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTA
ATGGGCATCTTTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGT
GAGAGGACTACAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATC
GCTACGACAACCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCAC
CGCTACGAGACCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGC
CAGCGGCGATGTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATA
TCACTCTGGCCGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCC
GAAGGACACTTGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACC
ACACAACCCCAAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGA
ACTTCGGCCACTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAG
GCCGACCAGTCCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGAC
ACAAGCGGATGAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGA
CAACCAGTCCCATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCA
GGACGGTCCAGCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGG
AAGCAGCATCGATGACAAAACCAAGCCGGGACTATAAAAGCTTTCTAGAC
CAT
BS16289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RA | 2121 | CG42708-PA | 1..2121 | 17..2137 | 10605 | 100 | Plus |
| CG42708-RH | 2328 | CG42708-PH | 1..1948 | 17..1964 | 9740 | 100 | Plus |
| CG42708-RE | 1947 | CG42708-PE | 22..1947 | 212..2137 | 9630 | 100 | Plus |
| CG42708-RH | 2328 | CG42708-PH | 2153..2328 | 1962..2137 | 880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RA | 3005 | CG42708-RA | 192..2312 | 17..2137 | 10605 | 100 | Plus |
| CG42708-RH | 2620 | CG42708-RH | 192..2139 | 17..1964 | 9740 | 100 | Plus |
| CG42708-RE | 2711 | CG42708-RE | 93..2018 | 212..2137 | 9630 | 100 | Plus |
| CG42708-RH | 2620 | CG42708-RH | 2344..2519 | 1962..2137 | 880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672587 | 1964..933 | 5160 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 932..559 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 558..319 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12671176..12671351 | 2137..1962 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:34:55 has no hits.
BS16289.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:30 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 188..2306 | 17..2135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:23 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 192..2310 | 17..2135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:54 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 188..2306 | 17..2135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:37 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 192..2310 | 17..2135 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:37 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671178..12671349 | 1964..2135 | 100 | <- | Minus |
| 2R | 12671557..12672587 | 933..1963 | 100 | <- | Minus |
| 2R | 12672664..12673037 | 559..932 | 100 | <- | Minus |
| 2R | 12673100..12673339 | 319..558 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679402 | 17..211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:23 Download gff for
BS16289.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558683..8558854 | 1964..2135 | 100 | <- | Minus |
| arm_2R | 8559062..8560092 | 933..1963 | 100 | <- | Minus |
| arm_2R | 8560169..8560542 | 559..932 | 100 | <- | Minus |
| arm_2R | 8560605..8560844 | 319..558 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566907 | 17..211 | 100 | | Minus |
BS16289.3prime Sequence
863 bp (858 high quality bases) assembled on 2007-05-15
> BS16289.3prime
ATGGTCTAGAAAGCTTTTATAGTCCCGGCTTGGTTTTGTCATCGATGCTG
CTTCCGGCGCTCGCCGTGCTGCCCGCATCCGATGGCACCGGGCTGGACCG
TCCTGATCCTGCCCTGGATCCGGATTCCACGGGAGTGGGAATGGGACTGG
TTGTCGGACTGGTCTCCAGGTCGCTTGTGCTGCAGATTTCCTCATCCGCT
TGTGTCTTGCTGGTCACCGCCTCGGGCTTGCACTCCTCGCTGGACTGGTC
GGCCTTCTCCGCCCAGGAGCGAAGGAACTCCACCACGTGACAGTGGCCGA
AGTTCTCTGCCTCATCCACGGGCAGATTTCCCCAGCGATCCTTGGGGTTG
TGTGGTACATGACACTGTTCCAGCAGGAACTTGACGCACTCCAAGTGTCC
TTCGGACGCAGCCAAATGGAGGGCAGTGCGACCATCGTAGTCGGCCAGAG
TGATATCCATTCCGGAGAGACGATGACGCCGCAAGGCTGTAACATCGCCG
CTGGCAGCTGAAAAGAGTAGATTCACGATGGACAGACCCTTGGTCTCGTA
GCGGTGCTTCCGCGGATCCTTCTTGTTGGACAGATGCTTCAGGTTGTCGT
AGCGATGGAAATTGAACATGGAGACCAGCTCCTCACAAAACTGTAGTCCT
CTCACTGTATTGCCTAAGTGATCCAAGGGCGGAGACCAGGCAAAGATGCC
CATTACGTTGGGGATGACCAGCATCATGCCGCCACTCACTCCAGACTTGG
CTGGCAGACCCACCTTGAAGGCGAACTGTCCGGAATAGTCGTATGTACCG
CATGAGTGCATAATCGAGAGCACATCCCGGATTACCTCCGGCCGGAACAC
CTTCTCCTCGGTG
BS16289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PF | 2016 | nemy-RF | 1170..2016 | 863..17 | 4235 | 100 | Minus |
| CG8772-PD | 2151 | nemy-RD | 1305..2151 | 863..17 | 4235 | 100 | Minus |
| CG8772-PA | 2121 | nemy-RA | 1275..2121 | 863..17 | 4235 | 100 | Minus |
| CG8772-PE | 1947 | nemy-RE | 1101..1947 | 863..17 | 4235 | 100 | Minus |
| CG8772-PC | 1977 | nemy-RC | 1131..1977 | 863..17 | 4235 | 100 | Minus |
| CG8772-PB | 2214 | nemy-RB | 1368..2214 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 1431..2277 | 863..17 | 4235 | 100 | Minus |
| CG42708-RC | 2741 | CG42708-RC | 1202..2048 | 863..17 | 4235 | 100 | Minus |
| CG42708-RE | 2711 | CG42708-RE | 1172..2018 | 863..17 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672229 | 190..863 | 3370 | 100 | Plus |
| 2R | 25286936 | 2R | 12671176..12671351 | 17..192 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:05:41 has no hits.
BS16289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:43 Download gff for
BS16289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PB | 1368..2214 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:37 Download gff for
BS16289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1172..2020 | 13..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:10 Download gff for
BS16289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1172..2020 | 13..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:10 Download gff for
BS16289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671174..12671349 | 13..190 | 98 | <- | Plus |
| 2R | 12671557..12672229 | 191..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:37 Download gff for
BS16289.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558679..8558854 | 13..190 | 98 | <- | Plus |
| arm_2R | 8559062..8559734 | 191..863 | 100 | | Plus |
BS16289.5prime Sequence
853 bp (805 high quality bases) assembled on 2007-05-15
> BS16289.5prime
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGG
ATGTGCTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATG
GGCAAGTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCC
GCGAGTGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATA
ACTACGAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACC
TTCAAGGCTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCG
GCAGCAGTTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGG
ATATTTACAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTAC
ATTCCGCAGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTG
CACGATTGATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCA
CACTCCAGAGTTGCAGTAAGCCGCTGACCTACGCCATTTGCCTGGAGAAA
CTG
BS16289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PA | 2121 | nemy-RA | 1..837 | 17..853 | 4135 | 99.7 | Plus |
| CG8772-PE | 1947 | nemy-RE | 22..663 | 212..853 | 3160 | 99.6 | Plus |
| CG8772-PD | 2151 | nemy-RD | 333..867 | 319..853 | 2625 | 99.6 | Plus |
| CG8772-PC | 1977 | nemy-RC | 159..693 | 319..853 | 2625 | 99.6 | Plus |
| CG8772-PF | 2016 | nemy-RF | 198..732 | 319..853 | 2625 | 99.6 | Plus |
| CG8772-PB | 2214 | nemy-RB | 396..930 | 319..853 | 2625 | 99.6 | Plus |
| CG8772-PD | 2151 | nemy-RD | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG8772-PC | 1977 | nemy-RC | 22..129 | 212..319 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RH | 2620 | CG42708-RH | 192..1028 | 17..853 | 4155 | 99.8 | Plus |
| CG42708-RA | 3005 | CG42708-RA | 192..1028 | 17..853 | 4155 | 99.8 | Plus |
| CG42708-RJ | 2303 | CG42708-RJ | 70..711 | 212..853 | 3180 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12672743..12673037 | 853..559 | 1445 | 99.3 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 558..319 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:34:08 has no hits.
BS16289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:22 Download gff for
BS16289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:59 Download gff for
BS16289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1028 | 11..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:17 Download gff for
BS16289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1028 | 11..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:17 Download gff for
BS16289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12672743..12673037 | 559..853 | 99 | <- | Minus |
| 2R | 12673100..12673339 | 319..558 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 11..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:59 Download gff for
BS16289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560248..8560542 | 559..853 | 99 | <- | Minus |
| arm_2R | 8560605..8560844 | 319..558 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 11..211 | 98 | | Minus |
BS16289.pep Sequence
Translation from 16 to 2136
> BS16289.pep
MLKGVPTLAGRNLRLLTTQAQVLVHQRAKASAAEPVEDFDQETDLLKRAK
FGHTGKQLQQKIINEKNLRAPPLMNLVFANRKLSFYDTSSTPKTKEDNAK
LHREQEQRNAEDVLFDMFASEETGLISMGKFLAGLKTTGIRRNDPRVREL
MDNLKKVHKLNNYETGSSAETQHLNRETFKAVVAPNIVLIAKAFRQQFVI
PDFTSFVKDIEDIYNRCKTNTLGKLADYIPQLARYNPDSWGLSICTIDGQ
RFSIGDVDVPFTLQSCSKPLTYAIALEKLGPKVVHSYVGQEPSGRNFNEL
VLDQNKKPHNPMINAGAILTCSLMNALVKPDMTSAEIFDYTMSWFKRLSG
GEYIGFNNAVFLSEREAADRNYALGFYMRENKCFPKRTNLKEVMDFYFQC
CSMETNCEAMSVIAASLANGGICPTTEEKVFRPEVIRDVLSIMHSCGTYD
YSGQFAFKVGLPAKSGVSGGMMLVIPNVMGIFAWSPPLDHLGNTVRGLQF
CEELVSMFNFHRYDNLKHLSNKKDPRKHRYETKGLSIVNLLFSAASGDVT
ALRRHRLSGMDITLADYDGRTALHLAASEGHLECVKFLLEQCHVPHNPKD
RWGNLPVDEAENFGHCHVVEFLRSWAEKADQSSEECKPEAVTSKTQADEE
ICSTSDLETSPTTSPIPTPVESGSRAGSGRSSPVPSDAGSTASAGSSIDD
KTKPGL*
BS16289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-PA | 706 | CG8772-PA | 1..706 | 1..706 | 3699 | 100 | Plus |
| CG42708-PD | 716 | CG8772-PD | 1..716 | 1..706 | 3678 | 98.6 | Plus |
| CG42708-PH | 775 | CG8772-PH | 1..696 | 1..700 | 3454 | 95.1 | Plus |
| CG42708-PE | 648 | CG8772-PE | 8..648 | 66..706 | 3376 | 100 | Plus |
| CG42708-PC | 658 | CG8772-PC | 8..658 | 66..706 | 3355 | 98.5 | Plus |
| CG42708-PH | 775 | CG8772-PH | 718..775 | 649..706 | 290 | 98.3 | Plus |
