Clone BS16290 Report

Search the DGRC for BS16290

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG7084-RB
Protein status:BS16290.pep: full length peptide match
Sequenced Size:1826

Clone Sequence Records

BS16290.complete Sequence

1826 bp assembled on 2009-12-07

GenBank Submission: KX805228

> BS16290.complete
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCCACAGCGATGGTTCTGCTTTTTTCCAAATACGTCATCGAATCGCCTC
GATGGTTGATTAGCAAACAGCGCTTCCGCGAGGCCATTGTCCAACTGCAG
AAGATAGCCAAAATTAACGGTCATCGCTTCGACATGACCGAAAAGGAATT
GGCGGAGATCTACAGTCGGGACAAGCAGGACGTCACCTATGGCATTGCGT
CGCTCTTTGCTGGTTGGCGGCTGGCACGCAACACCACCATCATGGGATTT
AGCTGGTGCGTGGTGGCCGTCTCCTATTTCACGCTGGTGCTCTTCAGTTC
CCGCATGGCGGGCAATCCGTTCCTGAACTTTTTATACCAGAGCATTGTGG
AAATACCCGCCTACGTCGTGGGCCGCTATATGGGCGATACGTACGGCAGG
CGGTTCACCAACTCCGTATCCTTCCTCATCTCGTTCGTCACCTGCCTGCC
CATCATTGTGTATTCGACGGATGAGCGGTACGAGAACCTCATGATCTACC
TGGCCACGTTCATCAAGTTCCTCAACGCGCTCACCTTTTTCACGGTGAAC
CTGCAGTGCCTGGAGATCTATCCCACGTGCATGCGACAAACGGGCGTGGC
GTTGGGCACCATTCTGGCCAACGCTATCGGAGTCCTGGCCCCGTACTTGG
TCTACCTGGGCACCACCGTGGACATCCGGGCACCTTACTACATCCTGGGC
GTTCTCTTTCTGCTGGGCGGCATTGGAGCTCTCTTCCTGCCGGAGACCCT
GCACAAGAAGCTGCCGGACACCATGGAGGAGGCGGGTCACTTTGGCAAAC
ACGATAAATTCTTCAGTCTGCCGAAACCGCCGCAGGCGGCGGAGAAGGAC
GACAAGCTGTCATCCCATCCGGAGTTAACCAGGCTCAGACGCTCGGAGAC
GGCGCCATGAAAGCTTTCTAGACCAT

BS16290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 1794 CG7084-PE 1..1794 17..1810 8970 100 Plus
CG7084-RF 1794 CG7084-PF 1..1794 17..1810 8970 100 Plus
CG7084-RC 1794 CG7084-PC 1..1794 17..1810 8970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 846..2640 17..1811 8975 100 Plus
CG7084-RF 3810 CG7084-RF 1258..3052 17..1811 8975 100 Plus
CG7084-RC 2460 CG7084-RC 497..2291 17..1811 8975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22302758..22303180 1283..1705 2115 100 Plus
3R 32079331 3R 22300339..22300646 17..324 1540 100 Plus
3R 32079331 3R 22302047..22302274 931..1158 1140 100 Plus
3R 32079331 3R 22301464..22301641 604..781 890 100 Plus
3R 32079331 3R 22301228..22301392 439..603 825 100 Plus
3R 32079331 3R 22301705..22301862 781..938 760 98.7 Plus
3R 32079331 3R 22302541..22302670 1155..1284 650 100 Plus
3R 32079331 3R 22300704..22300819 325..440 580 100 Plus
3R 32079331 3R 22303557..22303662 1706..1811 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:47:04 has no hits.

BS16290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:56 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 1..1794 17..1810 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:15 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 355..2147 17..1809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:37 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 481..2273 17..1809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:43 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 355..2147 17..1809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:41 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 497..2289 17..1809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:41 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22302047..22302271 931..1155 100 -> Plus
3R 22302542..22302669 1156..1283 100 -> Plus
3R 22302759..22303180 1284..1705 100 -> Plus
3R 22303557..22303660 1706..1809 100   Plus
3R 22301230..22301392 441..603 100 -> Plus
3R 22301464..22301640 604..780 100 -> Plus
3R 22301705..22301854 781..930 100 -> Plus
3R 22300339..22300646 17..324 100 -> Plus
3R 22300704..22300819 325..440 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:37 Download gff for BS16290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18127427..18127576 781..930 100 -> Plus
arm_3R 18127769..18127993 931..1155 100 -> Plus
arm_3R 18128264..18128391 1156..1283 100 -> Plus
arm_3R 18126952..18127114 441..603 100 -> Plus
arm_3R 18127186..18127362 604..780 100 -> Plus
arm_3R 18126061..18126368 17..324 100 -> Plus
arm_3R 18126426..18126541 325..440 100 -> Plus
arm_3R 18128481..18128902 1284..1705 100 -> Plus
arm_3R 18129279..18129382 1706..1809 100   Plus

BS16290.3prime Sequence

903 bp (845 high quality bases) assembled on 2007-05-15

> BS16290.3prime
ATGGTCTAGAAAGCTTTCATGGCGCCGTCTCCGAGCGTCTGAGCCTGGTT
AACTCCGGATGGGATGACAGCTTGTCGTCCTTCTCCGCCGCCTGCGGCGG
TTTCGGCAGACTGAAGAATTTATCGTGTTTGCCAAAGTGACCCGCCTCCT
CCATGGTGTCCGGCAGCTTCTTGTGCAGGGTCTCCGGCAGGAAGAGAGCT
CCAATGCCGCCCAGCAGAAAGAGAACGCCCAGGATGTAGTAAGGTGCCCG
GATGTCCACGGTGGTGCCCAGGTAGACCAAGTACGGGGCCAGGACTCCGA
TAGCGTTGGCCAGAATGGTGCCCAACGCCACGCCCGTTTGTCGCATGCAC
GTGGGATAGATCTCCAGGCACTGCAGGTTCACCGTGAAAAAGGTGAGCGC
GTTGAGGAACTTGATGAACGTGGCCAGGTAGATCATGAGGTTCTCGTACC
GCTCATCCGTCGAATACACAATGATGGGCAGGCAGGTGACGAACGAGATG
AGGAAGGATACGGAGTTGGTGAACCGCCTGCCGTACGTATCGCCCATATA
GCGGCCCACGACGTAGGCGGGTATTTCCACAATGCTCTGGTATAAAAAGT
TCAGGAACGGATTGCCCGCCATGCGGGAACTGAAGAGCACCAGCGTGAAA
TAGGAGACGGCCACCACGCACCAGCTAAATCCCATGATGGTGGTGTTGCG
TGCCAGCCGCCAACCAGCAAAGAGCGACGCAATGCCATAGGTGACGTCCT
GCTTGTCCCGACTGTAGATCTCCGCCAATTCCTTTTCGGTCATGTCGAAG
CGATGACCGTTAATTTTGGCTATCTTCTGCAGTTGGACAATGGCCTCGCG
GAAGCGCTGTTTTGCTATCAACCATCGAGGCGATTCGATGACGTATTTGG
AAA

BS16290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PB 1794 CG7084-RB 949..1794 862..17 4230 100 Minus
CG7084-PA 1794 CG7084-RA 949..1794 862..17 4230 100 Minus
CG7084-PB 1794 CG7084-RB 908..944 903..867 185 100 Minus
CG7084-PA 1794 CG7084-RA 908..944 903..867 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 1753..2640 903..16 4395 99.8 Minus
CG7084-RF 3810 CG7084-RF 2165..3052 903..16 4395 99.8 Minus
CG7084-RC 2460 CG7084-RC 1404..2291 903..16 4395 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22302758..22303180 544..122 2115 100 Minus
3R 32079331 3R 22302047..22302274 896..669 1080 98.2 Minus
3R 32079331 3R 22302541..22302670 672..543 650 100 Minus
3R 32079331 3R 22303557..22303662 121..16 530 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:20:33 has no hits.

BS16290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:47 Download gff for BS16290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-PA 911..1794 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:56 Download gff for BS16290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 1391..2275 16..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:18 Download gff for BS16290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 1407..2291 16..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:18 Download gff for BS16290.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22302759..22303180 122..543 100 -> Minus
3R 22303557..22303662 16..121 100   Minus
3R 22302043..22302271 672..900 98 -> Minus
3R 22302542..22302669 544..671 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:56 Download gff for BS16290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18128264..18128391 544..671 100 -> Minus
arm_3R 18127765..18127993 672..900 98 -> Minus
arm_3R 18128481..18128902 122..543 100 -> Minus
arm_3R 18129279..18129384 16..121 100   Minus

BS16290.5prime Sequence

931 bp (750 high quality bases) assembled on 2007-05-15

> BS16290.5prime
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCAACAGCGATGGGTCTGCTTTTTTCCAAT

BS16290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PB 1794 CG7084-RB 1..914 17..930 4520 99.7 Plus
CG7084-PA 1794 CG7084-RA 1..914 17..930 4520 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 846..1759 17..930 4540 99.8 Plus
CG7084-RF 3810 CG7084-RF 1258..2171 17..930 4540 99.8 Plus
CG7084-RC 2460 CG7084-RC 497..1410 17..930 4540 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22300339..22300646 17..324 1540 100 Plus
3R 32079331 3R 22301464..22301641 604..781 890 100 Plus
3R 32079331 3R 22301228..22301392 439..603 825 100 Plus
3R 32079331 3R 22301705..22301854 781..930 720 98.7 Plus
3R 32079331 3R 22300704..22300819 325..440 580 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:07:26 has no hits.

BS16290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:28 Download gff for BS16290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-PA 1..914 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:43 Download gff for BS16290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 466..1394 6..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:17 Download gff for BS16290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 482..1410 6..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:17 Download gff for BS16290.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22301230..22301392 441..603 100 -> Plus
3R 22301464..22301640 604..780 100 -> Plus
3R 22301705..22301854 781..931 98   Plus
3R 22300324..22300646 6..324 98 -> Plus
3R 22300704..22300819 325..440 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:43 Download gff for BS16290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18127427..18127576 781..931 98   Plus
arm_3R 18126046..18126368 6..324 98 -> Plus
arm_3R 18127186..18127362 604..780 100 -> Plus
arm_3R 18126426..18126541 325..440 100 -> Plus
arm_3R 18126952..18127114 441..603 100 -> Plus

BS16290.pep Sequence

Translation from 16 to 1809

> BS16290.pep
MRDKKEQANSRKASQVSGHFSQMDVDDSEFNDPFQALMEKAGNHGRYQTL
YNFVFVGGLAFSGAMIYMNIILALNIPDHWCTVPGRENTNFSLEEWRDIT
LPKQADNRGRKTFSNCEMFQMNFSEITDWSAWNSNLTKTTEACQNGWSYD
KTWYESTIPTDHNWVCAKDLFVTNVFVVGRVTEVAGSFILGQMGDSYGRR
FVYYISVVFCSLGRLGSIMCTSSYTWFLIMSGIVGLTVNSLFQSPQIIGM
EISREEDRSRIAFFQSCGWSIGTTLMPLLYWWLRHWDSFMWLTSIPTAMV
LLFSKYVIESPRWLISKQRFREAIVQLQKIAKINGHRFDMTEKELAEIYS
RDKQDVTYGIASLFAGWRLARNTTIMGFSWCVVAVSYFTLVLFSSRMAGN
PFLNFLYQSIVEIPAYVVGRYMGDTYGRRFTNSVSFLISFVTCLPIIVYS
TDERYENLMIYLATFIKFLNALTFFTVNLQCLEIYPTCMRQTGVALGTIL
ANAIGVLAPYLVYLGTTVDIRAPYYILGVLFLLGGIGALFLPETLHKKLP
DTMEEAGHFGKHDKFFSLPKPPQAAEKDDKLSSHPELTRLRRSETAP*

BS16290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PE 597 CG7084-PE 1..597 1..597 3168 100 Plus
CG7084-PF 597 CG7084-PF 1..597 1..597 3168 100 Plus
CG7084-PC 597 CG7084-PC 1..597 1..597 3168 100 Plus
CG7084-PB 597 CG7084-PB 1..597 1..597 3168 100 Plus
CG9317-PC 674 CG9317-PC 26..604 21..595 602 27.9 Plus