Clone Sequence Records
BS16290.complete Sequence
1826 bp assembled on 2009-12-07
GenBank Submission: KX805228
> BS16290.complete
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCCACAGCGATGGTTCTGCTTTTTTCCAAATACGTCATCGAATCGCCTC
GATGGTTGATTAGCAAACAGCGCTTCCGCGAGGCCATTGTCCAACTGCAG
AAGATAGCCAAAATTAACGGTCATCGCTTCGACATGACCGAAAAGGAATT
GGCGGAGATCTACAGTCGGGACAAGCAGGACGTCACCTATGGCATTGCGT
CGCTCTTTGCTGGTTGGCGGCTGGCACGCAACACCACCATCATGGGATTT
AGCTGGTGCGTGGTGGCCGTCTCCTATTTCACGCTGGTGCTCTTCAGTTC
CCGCATGGCGGGCAATCCGTTCCTGAACTTTTTATACCAGAGCATTGTGG
AAATACCCGCCTACGTCGTGGGCCGCTATATGGGCGATACGTACGGCAGG
CGGTTCACCAACTCCGTATCCTTCCTCATCTCGTTCGTCACCTGCCTGCC
CATCATTGTGTATTCGACGGATGAGCGGTACGAGAACCTCATGATCTACC
TGGCCACGTTCATCAAGTTCCTCAACGCGCTCACCTTTTTCACGGTGAAC
CTGCAGTGCCTGGAGATCTATCCCACGTGCATGCGACAAACGGGCGTGGC
GTTGGGCACCATTCTGGCCAACGCTATCGGAGTCCTGGCCCCGTACTTGG
TCTACCTGGGCACCACCGTGGACATCCGGGCACCTTACTACATCCTGGGC
GTTCTCTTTCTGCTGGGCGGCATTGGAGCTCTCTTCCTGCCGGAGACCCT
GCACAAGAAGCTGCCGGACACCATGGAGGAGGCGGGTCACTTTGGCAAAC
ACGATAAATTCTTCAGTCTGCCGAAACCGCCGCAGGCGGCGGAGAAGGAC
GACAAGCTGTCATCCCATCCGGAGTTAACCAGGCTCAGACGCTCGGAGAC
GGCGCCATGAAAGCTTTCTAGACCAT
BS16290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 1794 | CG7084-PE | 1..1794 | 17..1810 | 8970 | 100 | Plus |
CG7084-RF | 1794 | CG7084-PF | 1..1794 | 17..1810 | 8970 | 100 | Plus |
CG7084-RC | 1794 | CG7084-PC | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 846..2640 | 17..1811 | 8975 | 100 | Plus |
CG7084-RF | 3810 | CG7084-RF | 1258..3052 | 17..1811 | 8975 | 100 | Plus |
CG7084-RC | 2460 | CG7084-RC | 497..2291 | 17..1811 | 8975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22302758..22303180 | 1283..1705 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 22300339..22300646 | 17..324 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 22302047..22302274 | 931..1158 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 22301464..22301641 | 604..781 | 890 | 100 | Plus |
3R | 32079331 | 3R | 22301228..22301392 | 439..603 | 825 | 100 | Plus |
3R | 32079331 | 3R | 22301705..22301862 | 781..938 | 760 | 98.7 | Plus |
3R | 32079331 | 3R | 22302541..22302670 | 1155..1284 | 650 | 100 | Plus |
3R | 32079331 | 3R | 22300704..22300819 | 325..440 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22303557..22303662 | 1706..1811 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:47:04 has no hits.
BS16290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:56 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 1..1794 | 17..1810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:15 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 355..2147 | 17..1809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:37 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 481..2273 | 17..1809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:43 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 355..2147 | 17..1809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:41 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 497..2289 | 17..1809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:41 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22302047..22302271 | 931..1155 | 100 | -> | Plus |
3R | 22302542..22302669 | 1156..1283 | 100 | -> | Plus |
3R | 22302759..22303180 | 1284..1705 | 100 | -> | Plus |
3R | 22303557..22303660 | 1706..1809 | 100 | | Plus |
3R | 22301230..22301392 | 441..603 | 100 | -> | Plus |
3R | 22301464..22301640 | 604..780 | 100 | -> | Plus |
3R | 22301705..22301854 | 781..930 | 100 | -> | Plus |
3R | 22300339..22300646 | 17..324 | 100 | -> | Plus |
3R | 22300704..22300819 | 325..440 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:37 Download gff for
BS16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18127427..18127576 | 781..930 | 100 | -> | Plus |
arm_3R | 18127769..18127993 | 931..1155 | 100 | -> | Plus |
arm_3R | 18128264..18128391 | 1156..1283 | 100 | -> | Plus |
arm_3R | 18126952..18127114 | 441..603 | 100 | -> | Plus |
arm_3R | 18127186..18127362 | 604..780 | 100 | -> | Plus |
arm_3R | 18126061..18126368 | 17..324 | 100 | -> | Plus |
arm_3R | 18126426..18126541 | 325..440 | 100 | -> | Plus |
arm_3R | 18128481..18128902 | 1284..1705 | 100 | -> | Plus |
arm_3R | 18129279..18129382 | 1706..1809 | 100 | | Plus |
BS16290.3prime Sequence
903 bp (845 high quality bases) assembled on 2007-05-15
> BS16290.3prime
ATGGTCTAGAAAGCTTTCATGGCGCCGTCTCCGAGCGTCTGAGCCTGGTT
AACTCCGGATGGGATGACAGCTTGTCGTCCTTCTCCGCCGCCTGCGGCGG
TTTCGGCAGACTGAAGAATTTATCGTGTTTGCCAAAGTGACCCGCCTCCT
CCATGGTGTCCGGCAGCTTCTTGTGCAGGGTCTCCGGCAGGAAGAGAGCT
CCAATGCCGCCCAGCAGAAAGAGAACGCCCAGGATGTAGTAAGGTGCCCG
GATGTCCACGGTGGTGCCCAGGTAGACCAAGTACGGGGCCAGGACTCCGA
TAGCGTTGGCCAGAATGGTGCCCAACGCCACGCCCGTTTGTCGCATGCAC
GTGGGATAGATCTCCAGGCACTGCAGGTTCACCGTGAAAAAGGTGAGCGC
GTTGAGGAACTTGATGAACGTGGCCAGGTAGATCATGAGGTTCTCGTACC
GCTCATCCGTCGAATACACAATGATGGGCAGGCAGGTGACGAACGAGATG
AGGAAGGATACGGAGTTGGTGAACCGCCTGCCGTACGTATCGCCCATATA
GCGGCCCACGACGTAGGCGGGTATTTCCACAATGCTCTGGTATAAAAAGT
TCAGGAACGGATTGCCCGCCATGCGGGAACTGAAGAGCACCAGCGTGAAA
TAGGAGACGGCCACCACGCACCAGCTAAATCCCATGATGGTGGTGTTGCG
TGCCAGCCGCCAACCAGCAAAGAGCGACGCAATGCCATAGGTGACGTCCT
GCTTGTCCCGACTGTAGATCTCCGCCAATTCCTTTTCGGTCATGTCGAAG
CGATGACCGTTAATTTTGGCTATCTTCTGCAGTTGGACAATGGCCTCGCG
GAAGCGCTGTTTTGCTATCAACCATCGAGGCGATTCGATGACGTATTTGG
AAA
BS16290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PB | 1794 | CG7084-RB | 949..1794 | 862..17 | 4230 | 100 | Minus |
CG7084-PA | 1794 | CG7084-RA | 949..1794 | 862..17 | 4230 | 100 | Minus |
CG7084-PB | 1794 | CG7084-RB | 908..944 | 903..867 | 185 | 100 | Minus |
CG7084-PA | 1794 | CG7084-RA | 908..944 | 903..867 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 1753..2640 | 903..16 | 4395 | 99.8 | Minus |
CG7084-RF | 3810 | CG7084-RF | 2165..3052 | 903..16 | 4395 | 99.8 | Minus |
CG7084-RC | 2460 | CG7084-RC | 1404..2291 | 903..16 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22302758..22303180 | 544..122 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 22302047..22302274 | 896..669 | 1080 | 98.2 | Minus |
3R | 32079331 | 3R | 22302541..22302670 | 672..543 | 650 | 100 | Minus |
3R | 32079331 | 3R | 22303557..22303662 | 121..16 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:20:33 has no hits.
BS16290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:25:47 Download gff for
BS16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-PA | 911..1794 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:56 Download gff for
BS16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 1391..2275 | 16..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:18 Download gff for
BS16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 1407..2291 | 16..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:18 Download gff for
BS16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22302759..22303180 | 122..543 | 100 | -> | Minus |
3R | 22303557..22303662 | 16..121 | 100 | | Minus |
3R | 22302043..22302271 | 672..900 | 98 | -> | Minus |
3R | 22302542..22302669 | 544..671 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:56 Download gff for
BS16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18128264..18128391 | 544..671 | 100 | -> | Minus |
arm_3R | 18127765..18127993 | 672..900 | 98 | -> | Minus |
arm_3R | 18128481..18128902 | 122..543 | 100 | -> | Minus |
arm_3R | 18129279..18129384 | 16..121 | 100 | | Minus |
BS16290.5prime Sequence
931 bp (750 high quality bases) assembled on 2007-05-15
> BS16290.5prime
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCAACAGCGATGGGTCTGCTTTTTTCCAAT
BS16290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PB | 1794 | CG7084-RB | 1..914 | 17..930 | 4520 | 99.7 | Plus |
CG7084-PA | 1794 | CG7084-RA | 1..914 | 17..930 | 4520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 846..1759 | 17..930 | 4540 | 99.8 | Plus |
CG7084-RF | 3810 | CG7084-RF | 1258..2171 | 17..930 | 4540 | 99.8 | Plus |
CG7084-RC | 2460 | CG7084-RC | 497..1410 | 17..930 | 4540 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22300339..22300646 | 17..324 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 22301464..22301641 | 604..781 | 890 | 100 | Plus |
3R | 32079331 | 3R | 22301228..22301392 | 439..603 | 825 | 100 | Plus |
3R | 32079331 | 3R | 22301705..22301854 | 781..930 | 720 | 98.7 | Plus |
3R | 32079331 | 3R | 22300704..22300819 | 325..440 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:26 has no hits.
BS16290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:28 Download gff for
BS16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-PA | 1..914 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:43 Download gff for
BS16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 466..1394 | 6..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:17 Download gff for
BS16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 482..1410 | 6..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:17 Download gff for
BS16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22301230..22301392 | 441..603 | 100 | -> | Plus |
3R | 22301464..22301640 | 604..780 | 100 | -> | Plus |
3R | 22301705..22301854 | 781..931 | 98 | | Plus |
3R | 22300324..22300646 | 6..324 | 98 | -> | Plus |
3R | 22300704..22300819 | 325..440 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:43 Download gff for
BS16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18127427..18127576 | 781..931 | 98 | | Plus |
arm_3R | 18126046..18126368 | 6..324 | 98 | -> | Plus |
arm_3R | 18127186..18127362 | 604..780 | 100 | -> | Plus |
arm_3R | 18126426..18126541 | 325..440 | 100 | -> | Plus |
arm_3R | 18126952..18127114 | 441..603 | 100 | -> | Plus |
BS16290.pep Sequence
Translation from 16 to 1809
> BS16290.pep
MRDKKEQANSRKASQVSGHFSQMDVDDSEFNDPFQALMEKAGNHGRYQTL
YNFVFVGGLAFSGAMIYMNIILALNIPDHWCTVPGRENTNFSLEEWRDIT
LPKQADNRGRKTFSNCEMFQMNFSEITDWSAWNSNLTKTTEACQNGWSYD
KTWYESTIPTDHNWVCAKDLFVTNVFVVGRVTEVAGSFILGQMGDSYGRR
FVYYISVVFCSLGRLGSIMCTSSYTWFLIMSGIVGLTVNSLFQSPQIIGM
EISREEDRSRIAFFQSCGWSIGTTLMPLLYWWLRHWDSFMWLTSIPTAMV
LLFSKYVIESPRWLISKQRFREAIVQLQKIAKINGHRFDMTEKELAEIYS
RDKQDVTYGIASLFAGWRLARNTTIMGFSWCVVAVSYFTLVLFSSRMAGN
PFLNFLYQSIVEIPAYVVGRYMGDTYGRRFTNSVSFLISFVTCLPIIVYS
TDERYENLMIYLATFIKFLNALTFFTVNLQCLEIYPTCMRQTGVALGTIL
ANAIGVLAPYLVYLGTTVDIRAPYYILGVLFLLGGIGALFLPETLHKKLP
DTMEEAGHFGKHDKFFSLPKPPQAAEKDDKLSSHPELTRLRRSETAP*
BS16290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PE | 597 | CG7084-PE | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PF | 597 | CG7084-PF | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PC | 597 | CG7084-PC | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PB | 597 | CG7084-PB | 1..597 | 1..597 | 3168 | 100 | Plus |
CG9317-PC | 674 | CG9317-PC | 26..604 | 21..595 | 602 | 27.9 | Plus |