Clone Sequence Records
BS16304.3prime Sequence
726 bp (726 high quality bases) assembled on 2007-05-15
> BS16304.3prime
ATGGTCTAGAAAGCTTTTAGTCGCTATCATTGTCATTTAAAATCGAGGAA
ACTATGCCTGCAAACTGCTCAGCCCGATCCAGAAATTGTTCCCGAGTGAG
ACTCGTATCGTTACGTAGATTTTGCGCCGTGAGGAGTAAGTTTTCAAAGT
CCTTCAGCTGACTATCCAGCTCGTCGGCACTGATTTCCTCCTTGTGATCA
GAACCAAACTTGACATTGGACCAAACTACGTTTTTCAAACCCTCCACAAC
TTCCTCGTAGTCCTTTTCAGCTTCATCTGGGTCACTCTCAACATTGCTTC
TCAATGTTATGATGTCAAAAAGGAAATTCGTTTTCTCCTTAATTTCTCCA
AAGGACAATCCACCTTCTTCTGAAGTGGAAGAGGTTAGCAGAAAGCCCAG
CTGAATCTGTTCATTCTTCGCTAACGTCTTGGGAATAGTGTCGATAAAGG
AGGTGTCTTGTGAATCAAAGTAAATAATCAACGCCTCGGTTGCTTGAAGA
ATTTTCTCCGGCACAGCTTCCAGTTTTCCAGAAAATGGAATTAAGTTGAT
AGAAGTGTTATAGTACTTGGTTTTAATGATGCACTTATAACAATTAAGTG
AGCACTCCGTTGATGTTGATTCCTTCGATTGATTCACTTCAGATAAAATA
TTTTCGACTATTTCCAGTGCAGGAACTGCTCCATAAGATAAAACAAGTAC
TACTGGATCCATGTCGACTGATAACT
BS16304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 696 | CG32109-RA | 1..696 | 712..17 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 65..760 | 712..17 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 454..199 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 12745729..12745925 | 651..455 | 985 | 100 | Minus |
3L | 28110227 | 3L | 12746296..12746478 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 12745408..12745468 | 712..652 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:43:30 has no hits.
BS16304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:01 Download gff for
BS16304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:24 Download gff for
BS16304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..760 | 17..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:19 Download gff for
BS16304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..760 | 17..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:19 Download gff for
BS16304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12745981..12746236 | 199..454 | 100 | -> | Minus |
3L | 12746297..12746481 | 14..198 | 98 | -> | Minus |
3L | 12745401..12745468 | 652..720 | 94 | -> | Minus |
3L | 12745729..12745925 | 455..651 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:24 Download gff for
BS16304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738501..12738568 | 652..720 | 94 | -> | Minus |
arm_3L | 12738829..12739025 | 455..651 | 100 | -> | Minus |
arm_3L | 12739081..12739336 | 199..454 | 100 | -> | Minus |
arm_3L | 12739397..12739581 | 14..198 | 98 | -> | Minus |
BS16304.5prime Sequence
726 bp (726 high quality bases) assembled on 2007-05-15
> BS16304.5prime
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACTAAAAGCTTTCTAGACC
BS16304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 696 | CG32109-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 65..760 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 275..530 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12745729..12745925 | 78..274 | 985 | 100 | Plus |
3L | 28110227 | 3L | 12746296..12746478 | 530..712 | 915 | 100 | Plus |
3L | 28110227 | 3L | 12745408..12745468 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:08:46 has no hits.
BS16304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:03 Download gff for
BS16304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:40 Download gff for
BS16304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..760 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:10 Download gff for
BS16304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..760 | 9..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:10 Download gff for
BS16304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12745401..12745468 | 9..77 | 94 | -> | Plus |
3L | 12745729..12745925 | 78..274 | 100 | -> | Plus |
3L | 12745981..12746236 | 275..530 | 100 | -> | Plus |
3L | 12746297..12746478 | 531..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:40 Download gff for
BS16304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738501..12738568 | 9..77 | 94 | -> | Plus |
arm_3L | 12738829..12739025 | 78..274 | 100 | -> | Plus |
arm_3L | 12739081..12739336 | 275..530 | 100 | -> | Plus |
arm_3L | 12739397..12739578 | 531..712 | 100 | | Plus |
BS16304.complete Sequence
728 bp assembled on 2007-05-07
GenBank Submission: FJ638112
> BS16304.complete
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACTAAAAGCTTTCTAGACCAT
BS16304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 696 | CG32109-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 65..760 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 275..530 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12745729..12745925 | 78..274 | 985 | 100 | Plus |
3L | 28110227 | 3L | 12746296..12746478 | 530..712 | 915 | 100 | Plus |
3L | 28110227 | 3L | 12745408..12745468 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:57:31 has no hits.
BS16304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:06 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:12 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 59..752 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:07 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 65..758 | 17..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:06 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 52..754 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:53 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 65..758 | 17..710 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:53 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12746297..12746476 | 531..710 | 100 | | Plus |
3L | 12745981..12746236 | 275..530 | 100 | -> | Plus |
3L | 12745408..12745468 | 17..77 | 100 | -> | Plus |
3L | 12745729..12745925 | 78..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:07 Download gff for
BS16304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738508..12738568 | 17..77 | 100 | -> | Plus |
arm_3L | 12738829..12739025 | 78..274 | 100 | -> | Plus |
arm_3L | 12739081..12739336 | 275..530 | 100 | -> | Plus |
arm_3L | 12739397..12739576 | 531..710 | 100 | | Plus |
BS16304.pep Sequence
Translation from 16 to 711
> BS16304.pep
MDPVVLVLSYGAVPALEIVENILSEVNQSKESTSTECSLNCYKCIIKTKY
YNTSINLIPFSGKLEAVPEKILQATEALIIYFDSQDTSFIDTIPKTLAKN
EQIQLGFLLTSSTSEEGGLSFGEIKEKTNFLFDIITLRSNVESDPDEAEK
DYEEVVEGLKNVVWSNVKFGSDHKEEISADELDSQLKDFENLLLTAQNLR
NDTSLTREQFLDRAEQFAGIVSSILNDNDSD*
BS16304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 231 | CG32109-PA | 1..231 | 1..231 | 1159 | 100 | Plus |