Clone BS16304 Report

Search the DGRC for BS16304

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG32109-RA
Protein status:BS16304.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16304.3prime Sequence

726 bp (726 high quality bases) assembled on 2007-05-15

> BS16304.3prime
ATGGTCTAGAAAGCTTTTAGTCGCTATCATTGTCATTTAAAATCGAGGAA
ACTATGCCTGCAAACTGCTCAGCCCGATCCAGAAATTGTTCCCGAGTGAG
ACTCGTATCGTTACGTAGATTTTGCGCCGTGAGGAGTAAGTTTTCAAAGT
CCTTCAGCTGACTATCCAGCTCGTCGGCACTGATTTCCTCCTTGTGATCA
GAACCAAACTTGACATTGGACCAAACTACGTTTTTCAAACCCTCCACAAC
TTCCTCGTAGTCCTTTTCAGCTTCATCTGGGTCACTCTCAACATTGCTTC
TCAATGTTATGATGTCAAAAAGGAAATTCGTTTTCTCCTTAATTTCTCCA
AAGGACAATCCACCTTCTTCTGAAGTGGAAGAGGTTAGCAGAAAGCCCAG
CTGAATCTGTTCATTCTTCGCTAACGTCTTGGGAATAGTGTCGATAAAGG
AGGTGTCTTGTGAATCAAAGTAAATAATCAACGCCTCGGTTGCTTGAAGA
ATTTTCTCCGGCACAGCTTCCAGTTTTCCAGAAAATGGAATTAAGTTGAT
AGAAGTGTTATAGTACTTGGTTTTAATGATGCACTTATAACAATTAAGTG
AGCACTCCGTTGATGTTGATTCCTTCGATTGATTCACTTCAGATAAAATA
TTTTCGACTATTTCCAGTGCAGGAACTGCTCCATAAGATAAAACAAGTAC
TACTGGATCCATGTCGACTGATAACT

BS16304.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 696 CG32109-RA 1..696 712..17 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 65..760 712..17 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 454..199 1280 100 Minus
3L 28110227 3L 12745729..12745925 651..455 985 100 Minus
3L 28110227 3L 12746296..12746478 199..17 915 100 Minus
3L 28110227 3L 12745408..12745468 712..652 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:43:30 has no hits.

BS16304.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:01 Download gff for BS16304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:24 Download gff for BS16304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..760 17..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:19 Download gff for BS16304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..760 17..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:19 Download gff for BS16304.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12745981..12746236 199..454 100 -> Minus
3L 12746297..12746481 14..198 98 -> Minus
3L 12745401..12745468 652..720 94 -> Minus
3L 12745729..12745925 455..651 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:24 Download gff for BS16304.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738501..12738568 652..720 94 -> Minus
arm_3L 12738829..12739025 455..651 100 -> Minus
arm_3L 12739081..12739336 199..454 100 -> Minus
arm_3L 12739397..12739581 14..198 98 -> Minus

BS16304.5prime Sequence

726 bp (726 high quality bases) assembled on 2007-05-15

> BS16304.5prime
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACTAAAAGCTTTCTAGACC

BS16304.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 696 CG32109-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 65..760 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 275..530 1280 100 Plus
3L 28110227 3L 12745729..12745925 78..274 985 100 Plus
3L 28110227 3L 12746296..12746478 530..712 915 100 Plus
3L 28110227 3L 12745408..12745468 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:08:46 has no hits.

BS16304.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:03 Download gff for BS16304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:40 Download gff for BS16304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..760 9..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:10 Download gff for BS16304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..760 9..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:10 Download gff for BS16304.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12745401..12745468 9..77 94 -> Plus
3L 12745729..12745925 78..274 100 -> Plus
3L 12745981..12746236 275..530 100 -> Plus
3L 12746297..12746478 531..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:40 Download gff for BS16304.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738501..12738568 9..77 94 -> Plus
arm_3L 12738829..12739025 78..274 100 -> Plus
arm_3L 12739081..12739336 275..530 100 -> Plus
arm_3L 12739397..12739578 531..712 100   Plus

BS16304.complete Sequence

728 bp assembled on 2007-05-07

GenBank Submission: FJ638112

> BS16304.complete
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACTAAAAGCTTTCTAGACCAT

BS16304.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 696 CG32109-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 65..760 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 275..530 1280 100 Plus
3L 28110227 3L 12745729..12745925 78..274 985 100 Plus
3L 28110227 3L 12746296..12746478 530..712 915 100 Plus
3L 28110227 3L 12745408..12745468 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:57:31 has no hits.

BS16304.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:06 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:12 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 59..752 17..710 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:07 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 65..758 17..710 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:06 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 52..754 9..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:53 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 65..758 17..710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:53 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12746297..12746476 531..710 100   Plus
3L 12745981..12746236 275..530 100 -> Plus
3L 12745408..12745468 17..77 100 -> Plus
3L 12745729..12745925 78..274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:07 Download gff for BS16304.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738508..12738568 17..77 100 -> Plus
arm_3L 12738829..12739025 78..274 100 -> Plus
arm_3L 12739081..12739336 275..530 100 -> Plus
arm_3L 12739397..12739576 531..710 100   Plus

BS16304.pep Sequence

Translation from 16 to 711

> BS16304.pep
MDPVVLVLSYGAVPALEIVENILSEVNQSKESTSTECSLNCYKCIIKTKY
YNTSINLIPFSGKLEAVPEKILQATEALIIYFDSQDTSFIDTIPKTLAKN
EQIQLGFLLTSSTSEEGGLSFGEIKEKTNFLFDIITLRSNVESDPDEAEK
DYEEVVEGLKNVVWSNVKFGSDHKEEISADELDSQLKDFENLLLTAQNLR
NDTSLTREQFLDRAEQFAGIVSSILNDNDSD*

BS16304.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 231 CG32109-PA 1..231 1..231 1159 100 Plus