Clone Sequence Records
BS16309.3prime Sequence
363 bp (363 high quality bases) assembled on 2007-05-15
> BS16309.3prime
ATGGTCTAGAAAGCTTTTAGCGCAGGATATTCCTGTCCACATTCGGCTGC
TCCTTGCCACCGGTAATTGCCTTCACGAATTCCGGGTAATGCAGCAGGCC
ATCGTTATTGTCGTCGGCAATCAGCAGAAATTTATCAATTGCCTCTATAA
AGTGCTCCAGCTCATCGGTGGCATTTTGTAGGTATGCATCCCGCTCGTTG
TTTTTGAAATAGTCATAGTTATGATGCATGGCAGACTGAATCATTTCGAG
GCCGTCCAGTGCATTGTTATTATCATTGTCATGGGCCTTAAACATATAGA
AGATTTTCTCCTCCTCACTCAAATCATCTAAATTTGCCTGGACGCCCATG
TCGACTGATAACT
BS16309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..516 | 352..17 | 1680 | 100 | Minus |
CG12817-PA | 333 | CG12817-RA | 1..333 | 349..17 | 1665 | 100 | Minus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 352..287 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..585 | 352..17 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 145..288 | 720 | 100 | Plus |
3R | 32079331 | 3R | 10223915..10224048 | 17..150 | 655 | 99.3 | Plus |
3R | 32079331 | 3R | 10224350..10224416 | 286..352 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:42:51 has no hits.
BS16309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:18 Download gff for
BS16309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 17..356 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:12 Download gff for
BS16309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..590 | 12..356 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:55 Download gff for
BS16309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..590 | 12..356 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:55 Download gff for
BS16309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10223910..10224042 | 12..144 | 97 | <- | Plus |
3R | 10224151..10224292 | 145..286 | 100 | <- | Plus |
3R | 10224351..10224418 | 287..356 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:12 Download gff for
BS16309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049632..6049764 | 12..144 | 97 | <- | Plus |
arm_3R | 6049873..6050014 | 145..286 | 100 | <- | Plus |
arm_3R | 6050073..6050140 | 287..356 | 97 | | Plus |
BS16309.5prime Sequence
363 bp (363 high quality bases) assembled on 2007-05-15
> BS16309.5prime
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCTAAA
AGCTTTCTAGACC
BS16309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..516 | 14..349 | 1680 | 100 | Plus |
CG12817-PA | 333 | CG12817-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 14..79 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..585 | 14..349 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223915..10224048 | 349..216 | 655 | 99.3 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:08:57 has no hits.
BS16309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:12 Download gff for
BS16309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 10..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:57 Download gff for
BS16309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..590 | 10..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:48 Download gff for
BS16309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..590 | 10..354 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:48 Download gff for
BS16309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10223910..10224042 | 222..354 | 97 | <- | Minus |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
3R | 10224351..10224418 | 10..79 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:57 Download gff for
BS16309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049632..6049764 | 222..354 | 97 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050140 | 10..79 | 97 | | Minus |
BS16309.complete Sequence
365 bp assembled on 2007-05-07
GenBank Submission: FJ638113
> BS16309.complete
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCTAAA
AGCTTTCTAGACCAT
BS16309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 516 | CG12817-PB | 181..516 | 14..349 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..585 | 14..349 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223915..10224048 | 349..216 | 655 | 99.3 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:50 has no hits.
BS16309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:48 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 179..516 | 10..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:58 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RA | 299..641 | 10..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:37 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..583 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:49 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RA | 299..641 | 10..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:56 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..583 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:56 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
3R | 10224351..10224413 | 17..79 | 100 | | Minus |
3R | 10223917..10224042 | 222..347 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:37 Download gff for
BS16309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049639..6049764 | 222..347 | 100 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050135 | 17..79 | 100 | | Minus |
BS16309.pep Sequence
Translation from 16 to 348
> BS16309.pep
MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN
NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE
QPNVDRNILR*
BS16309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 171 | CG12817-PB | 62..171 | 1..110 | 584 | 100 | Plus |
CG17271-PA | 281 | CG17271-PA | 155..250 | 1..94 | 162 | 37.5 | Plus |