Clone BS16309 Report

Search the DGRC for BS16309

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG12817-RA
Protein status:BS16309.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS16309.3prime Sequence

363 bp (363 high quality bases) assembled on 2007-05-15

> BS16309.3prime
ATGGTCTAGAAAGCTTTTAGCGCAGGATATTCCTGTCCACATTCGGCTGC
TCCTTGCCACCGGTAATTGCCTTCACGAATTCCGGGTAATGCAGCAGGCC
ATCGTTATTGTCGTCGGCAATCAGCAGAAATTTATCAATTGCCTCTATAA
AGTGCTCCAGCTCATCGGTGGCATTTTGTAGGTATGCATCCCGCTCGTTG
TTTTTGAAATAGTCATAGTTATGATGCATGGCAGACTGAATCATTTCGAG
GCCGTCCAGTGCATTGTTATTATCATTGTCATGGGCCTTAAACATATAGA
AGATTTTCTCCTCCTCACTCAAATCATCTAAATTTGCCTGGACGCCCATG
TCGACTGATAACT

BS16309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 516 CG12817-RB 181..516 352..17 1680 100 Minus
CG12817-PA 333 CG12817-RA 1..333 349..17 1665 100 Minus
CG12817-PC 270 CG12817-RC 181..246 352..287 330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..585 352..17 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 145..288 720 100 Plus
3R 32079331 3R 10223915..10224048 17..150 655 99.3 Plus
3R 32079331 3R 10224350..10224416 286..352 335 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:42:51 has no hits.

BS16309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:18 Download gff for BS16309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-PB 179..516 17..356 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:12 Download gff for BS16309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..590 12..356 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:55 Download gff for BS16309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..590 12..356 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:55 Download gff for BS16309.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10223910..10224042 12..144 97 <- Plus
3R 10224151..10224292 145..286 100 <- Plus
3R 10224351..10224418 287..356 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:12 Download gff for BS16309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049632..6049764 12..144 97 <- Plus
arm_3R 6049873..6050014 145..286 100 <- Plus
arm_3R 6050073..6050140 287..356 97   Plus

BS16309.5prime Sequence

363 bp (363 high quality bases) assembled on 2007-05-15

> BS16309.5prime
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCTAAA
AGCTTTCTAGACC

BS16309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 516 CG12817-RB 181..516 14..349 1680 100 Plus
CG12817-PA 333 CG12817-RA 1..333 17..349 1665 100 Plus
CG12817-PC 270 CG12817-RC 181..246 14..79 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..585 14..349 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 221..78 720 100 Minus
3R 32079331 3R 10223915..10224048 349..216 655 99.3 Minus
3R 32079331 3R 10224350..10224416 80..14 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:08:57 has no hits.

BS16309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:12 Download gff for BS16309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-PB 179..516 10..349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:20:57 Download gff for BS16309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..590 10..354 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:48 Download gff for BS16309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..590 10..354 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:48 Download gff for BS16309.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10223910..10224042 222..354 97 <- Minus
3R 10224151..10224292 80..221 100 <- Minus
3R 10224351..10224418 10..79 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:20:57 Download gff for BS16309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049632..6049764 222..354 97 <- Minus
arm_3R 6049873..6050014 80..221 100 <- Minus
arm_3R 6050073..6050140 10..79 97   Minus

BS16309.complete Sequence

365 bp assembled on 2007-05-07

GenBank Submission: FJ638113

> BS16309.complete
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCTAAA
AGCTTTCTAGACCAT

BS16309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 516 CG12817-PB 181..516 14..349 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..585 14..349 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 221..78 720 100 Minus
3R 32079331 3R 10223915..10224048 349..216 655 99.3 Minus
3R 32079331 3R 10224350..10224416 80..14 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:32:50 has no hits.

BS16309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:48 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 179..516 10..349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:58 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RA 299..641 10..354 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:37 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 253..583 17..347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:49 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RA 299..641 10..354 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:56 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 253..583 17..347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:56 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10224151..10224292 80..221 100 <- Minus
3R 10224351..10224413 17..79 100   Minus
3R 10223917..10224042 222..347 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:37 Download gff for BS16309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049639..6049764 222..347 100 <- Minus
arm_3R 6049873..6050014 80..221 100 <- Minus
arm_3R 6050073..6050135 17..79 100   Minus

BS16309.pep Sequence

Translation from 16 to 348

> BS16309.pep
MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN
NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE
QPNVDRNILR*

BS16309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 171 CG12817-PB 62..171 1..110 584 100 Plus
CG17271-PA 281 CG17271-PA 155..250 1..94 162 37.5 Plus