Clone BS16311 Report

Search the DGRC for BS16311

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:11
Vector:pDNR-Dual
Associated Gene/TranscripteIF-4E-RC
Protein status:BS16311.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16311.3prime Sequence

777 bp (777 high quality bases) assembled on 2007-05-15

> BS16311.3prime
ATGGTCTAGAAAGCTTCTACAAAGTGTAGATCGATTTCACGTTGGAGCCC
TGCTTGACCATCGTGTCCTTGTGCAACTGATACTGCAGCGAGTTGTTGCG
TCCCAGACGCAGGGCATCGCGCAGCTTGTGACCAATCTCAAGGGCAGCTT
CCTCGTTGTTTCCGTCGGCAGTCCAGATGGATATCTTGTTGCTCTTGCCG
CGAATGTTTATAACAGCGCCGCAGATCTGATCAGAGTGATCGAAGGCCTC
ACCAATCAGGCAGAGCAGCACATCGAGCCATAGGTTATCCAGATCGGTCT
TGGAGCTTTTGTTAAGGGTAATGACCCAACGACCGCCCTGTTTGTTGGCT
GCATCCTCCCACATGGGACGAATGTTCTTCTTGAATAGCGAGTAGTCACT
ACCCAGCTTGATCTCTGATGGGGGCTTGATGTGGTTGTATAGGCTCCAGA
AGTCCTCGACGGTATCGAAGCTGGTGATCTCGTTTTGCATGTCCTCCCAG
GACTTGGACCGATCGTTTTCAAGGTACCACAGCGTCCAGACATTCATGAG
CGGGTGTTTGTATAAATGCTCGGTGCGCACAGCATCGTCGCCGGCAGGAG
CAGTAGTGGTTGCAGTGTTGCCTGCTGGTTCACCAGTCTCCTGTGGGTCC
TCCTTGGGCTTGACATCCTTAGCCTCGGCGGGCGCTGCAGCCGAAGTTGG
TGGTTCCGGACGACCCTGCTCGGTGCTGGGGGCGCTGGTCTTCTCCGTCT
CCAACACTACCATGTCGACTGATAACT

BS16311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4035-PC 747 eIF-4E-RC 1..747 763..17 3735 100 Minus
CG4035-PA 780 eIF-4E-RA 58..780 739..17 3615 100 Minus
CG4035-PG 780 eIF-4E-RG 58..780 739..17 3615 100 Minus
CG4035-PE 780 eIF-4E-RE 58..780 739..17 3615 100 Minus
CG4035-PF 780 eIF-4E-RF 58..780 739..17 3615 100 Minus
CG4035-PB 780 eIF-4E-RB 58..780 739..17 3615 100 Minus
CG4035-PD 780 eIF-4E-RD 58..780 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 1156 CG4035-RC 157..904 764..17 3740 100 Minus
eIF-4E-RI 1793 CG4035-RI 819..1541 739..17 3615 100 Minus
eIF-4E-RH 1492 CG4035-RH 518..1240 739..17 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400955 369..741 1865 100 Plus
3L 28110227 3L 9399870..9400033 17..180 820 100 Plus
3L 28110227 3L 9400419..9400519 269..369 505 100 Plus
3L 28110227 3L 9400097..9400185 181..269 445 100 Plus
X 23542271 X 1158961..1159338 162..539 390 73.5 Plus
3R 32079331 3R 29026520..29026848 171..499 325 73.3 Plus
3L 28110227 3L 6665168..6665336 370..538 290 78.1 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:12 has no hits.

BS16311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:13 Download gff for BS16311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4035-PC 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:43 Download gff for BS16311.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..906 13..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:02 Download gff for BS16311.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..906 13..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:02 Download gff for BS16311.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9399868..9400033 13..180 98 <- Plus
3L 9400097..9400184 181..268 100 <- Plus
3L 9400419..9400518 269..368 100 <- Plus
3L 9400583..9400953 369..739 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:43 Download gff for BS16311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9392968..9393133 13..180 98 <- Plus
arm_3L 9393197..9393284 181..268 100 <- Plus
arm_3L 9393519..9393618 269..368 100 <- Plus
arm_3L 9393683..9394053 369..739 100 <- Plus

BS16311.5prime Sequence

777 bp (777 high quality bases) assembled on 2007-05-15

> BS16311.5prime
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGTAGAAGCTTTCTAGACC

BS16311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4035-PC 747 eIF-4E-RC 1..747 17..763 3735 100 Plus
CG4035-PA 780 eIF-4E-RA 58..780 41..763 3615 100 Plus
CG4035-PG 780 eIF-4E-RG 58..780 41..763 3615 100 Plus
CG4035-PE 780 eIF-4E-RE 58..780 41..763 3615 100 Plus
CG4035-PF 780 eIF-4E-RF 58..780 41..763 3615 100 Plus
CG4035-PB 780 eIF-4E-RB 58..780 41..763 3615 100 Plus
CG4035-PD 780 eIF-4E-RD 58..780 41..763 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 1156 CG4035-RC 157..904 16..763 3740 100 Plus
eIF-4E-RI 1793 CG4035-RI 819..1541 41..763 3615 100 Plus
eIF-4E-RH 1492 CG4035-RH 518..1240 41..763 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400955 411..39 1865 100 Minus
3L 28110227 3L 9399870..9400033 763..600 820 100 Minus
3L 28110227 3L 9400419..9400519 511..411 505 100 Minus
3L 28110227 3L 9400097..9400185 599..511 445 100 Minus
X 23542271 X 1158961..1159338 618..241 390 73.5 Minus
3R 32079331 3R 29026520..29026848 609..281 325 73.3 Minus
3L 28110227 3L 6665168..6665336 410..242 290 78.1 Minus
Blast to na_te.dros performed on 2015-02-11 15:38:50 has no hits.

BS16311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:11 Download gff for BS16311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4035-PC 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:33 Download gff for BS16311.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..906 9..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:54 Download gff for BS16311.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..906 9..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:54 Download gff for BS16311.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9399868..9400033 600..767 98 <- Minus
3L 9400097..9400184 512..599 100 <- Minus
3L 9400419..9400518 412..511 100 <- Minus
3L 9400583..9400953 41..411 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:33 Download gff for BS16311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9392968..9393133 600..767 98 <- Minus
arm_3L 9393197..9393284 512..599 100 <- Minus
arm_3L 9393519..9393618 412..511 100 <- Minus
arm_3L 9393683..9394053 41..411 100 <- Minus

BS16311.complete Sequence

779 bp assembled on 2007-05-07

GenBank Submission: FJ638114

> BS16311.complete
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGTAGAAGCTTTCTAGACCAT

BS16311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 747 CG4035-PC 1..747 17..763 3735 100 Plus
eIF-4E-RI 780 CG4035-PI 58..780 41..763 3615 100 Plus
eIF-4E-RH 780 CG4035-PH 58..780 41..763 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 1156 CG4035-RC 157..904 16..763 3740 100 Plus
eIF-4E-RI 1793 CG4035-RI 819..1541 41..763 3615 100 Plus
eIF-4E-RH 1492 CG4035-RH 518..1240 41..763 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400955 411..39 1865 100 Minus
3L 28110227 3L 9399870..9400033 763..600 820 100 Minus
3L 28110227 3L 9400419..9400519 511..411 505 100 Minus
3L 28110227 3L 9400097..9400185 599..511 445 100 Minus
X 23542271 X 1158961..1159338 618..241 390 73.5 Minus
3R 32079331 3R 29026520..29026848 609..281 325 73.3 Minus
3L 28110227 3L 6665168..6665336 410..242 290 78.1 Minus
Blast to na_te.dros performed on 2014-11-26 15:58:59 has no hits.

BS16311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:29 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:02 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 153..911 9..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:17 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 158..904 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:30 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 153..911 9..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:26 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 158..904 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:26 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9399870..9400033 600..763 100 <- Minus
3L 9400097..9400184 512..599 100 <- Minus
3L 9400419..9400518 412..511 100 <- Minus
3L 9400583..9400953 41..411 100 <- Minus
3L 9402280..9402303 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:17 Download gff for BS16311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9392970..9393133 600..763 100 <- Minus
arm_3L 9393197..9393284 512..599 100 <- Minus
arm_3L 9393519..9393618 412..511 100 <- Minus
arm_3L 9393683..9394053 41..411 100 <- Minus
arm_3L 9395380..9395403 17..40 100   Minus

BS16311.pep Sequence

Translation from 16 to 762

> BS16311.pep
MVVLETEKTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNT
ATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFD
TVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITL
NKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTAD
GNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL*

BS16311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-PC 248 CG4035-PC 1..248 1..248 1321 100 Plus
eIF-4E-PI 259 CG4035-PI 19..259 8..248 1289 100 Plus
eIF-4E-PH 259 CG4035-PH 19..259 8..248 1289 100 Plus
eIF-4E-PD 259 CG4035-PD 19..259 8..248 1289 100 Plus
eIF-4E-PB 259 CG4035-PB 19..259 8..248 1289 100 Plus