Clone Sequence Records
BS16311.3prime Sequence
777 bp (777 high quality bases) assembled on 2007-05-15
> BS16311.3prime
ATGGTCTAGAAAGCTTCTACAAAGTGTAGATCGATTTCACGTTGGAGCCC
TGCTTGACCATCGTGTCCTTGTGCAACTGATACTGCAGCGAGTTGTTGCG
TCCCAGACGCAGGGCATCGCGCAGCTTGTGACCAATCTCAAGGGCAGCTT
CCTCGTTGTTTCCGTCGGCAGTCCAGATGGATATCTTGTTGCTCTTGCCG
CGAATGTTTATAACAGCGCCGCAGATCTGATCAGAGTGATCGAAGGCCTC
ACCAATCAGGCAGAGCAGCACATCGAGCCATAGGTTATCCAGATCGGTCT
TGGAGCTTTTGTTAAGGGTAATGACCCAACGACCGCCCTGTTTGTTGGCT
GCATCCTCCCACATGGGACGAATGTTCTTCTTGAATAGCGAGTAGTCACT
ACCCAGCTTGATCTCTGATGGGGGCTTGATGTGGTTGTATAGGCTCCAGA
AGTCCTCGACGGTATCGAAGCTGGTGATCTCGTTTTGCATGTCCTCCCAG
GACTTGGACCGATCGTTTTCAAGGTACCACAGCGTCCAGACATTCATGAG
CGGGTGTTTGTATAAATGCTCGGTGCGCACAGCATCGTCGCCGGCAGGAG
CAGTAGTGGTTGCAGTGTTGCCTGCTGGTTCACCAGTCTCCTGTGGGTCC
TCCTTGGGCTTGACATCCTTAGCCTCGGCGGGCGCTGCAGCCGAAGTTGG
TGGTTCCGGACGACCCTGCTCGGTGCTGGGGGCGCTGGTCTTCTCCGTCT
CCAACACTACCATGTCGACTGATAACT
BS16311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4035-PC | 747 | eIF-4E-RC | 1..747 | 763..17 | 3735 | 100 | Minus |
CG4035-PA | 780 | eIF-4E-RA | 58..780 | 739..17 | 3615 | 100 | Minus |
CG4035-PG | 780 | eIF-4E-RG | 58..780 | 739..17 | 3615 | 100 | Minus |
CG4035-PE | 780 | eIF-4E-RE | 58..780 | 739..17 | 3615 | 100 | Minus |
CG4035-PF | 780 | eIF-4E-RF | 58..780 | 739..17 | 3615 | 100 | Minus |
CG4035-PB | 780 | eIF-4E-RB | 58..780 | 739..17 | 3615 | 100 | Minus |
CG4035-PD | 780 | eIF-4E-RD | 58..780 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 1156 | CG4035-RC | 157..904 | 764..17 | 3740 | 100 | Minus |
eIF-4E-RI | 1793 | CG4035-RI | 819..1541 | 739..17 | 3615 | 100 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 518..1240 | 739..17 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400955 | 369..741 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 9399870..9400033 | 17..180 | 820 | 100 | Plus |
3L | 28110227 | 3L | 9400419..9400519 | 269..369 | 505 | 100 | Plus |
3L | 28110227 | 3L | 9400097..9400185 | 181..269 | 445 | 100 | Plus |
X | 23542271 | X | 1158961..1159338 | 162..539 | 390 | 73.5 | Plus |
3R | 32079331 | 3R | 29026520..29026848 | 171..499 | 325 | 73.3 | Plus |
3L | 28110227 | 3L | 6665168..6665336 | 370..538 | 290 | 78.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:12 has no hits.
BS16311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:13 Download gff for
BS16311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4035-PC | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:43 Download gff for
BS16311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..906 | 13..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:02 Download gff for
BS16311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..906 | 13..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:02 Download gff for
BS16311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9399868..9400033 | 13..180 | 98 | <- | Plus |
3L | 9400097..9400184 | 181..268 | 100 | <- | Plus |
3L | 9400419..9400518 | 269..368 | 100 | <- | Plus |
3L | 9400583..9400953 | 369..739 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:43 Download gff for
BS16311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9392968..9393133 | 13..180 | 98 | <- | Plus |
arm_3L | 9393197..9393284 | 181..268 | 100 | <- | Plus |
arm_3L | 9393519..9393618 | 269..368 | 100 | <- | Plus |
arm_3L | 9393683..9394053 | 369..739 | 100 | <- | Plus |
BS16311.5prime Sequence
777 bp (777 high quality bases) assembled on 2007-05-15
> BS16311.5prime
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGTAGAAGCTTTCTAGACC
BS16311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4035-PC | 747 | eIF-4E-RC | 1..747 | 17..763 | 3735 | 100 | Plus |
CG4035-PA | 780 | eIF-4E-RA | 58..780 | 41..763 | 3615 | 100 | Plus |
CG4035-PG | 780 | eIF-4E-RG | 58..780 | 41..763 | 3615 | 100 | Plus |
CG4035-PE | 780 | eIF-4E-RE | 58..780 | 41..763 | 3615 | 100 | Plus |
CG4035-PF | 780 | eIF-4E-RF | 58..780 | 41..763 | 3615 | 100 | Plus |
CG4035-PB | 780 | eIF-4E-RB | 58..780 | 41..763 | 3615 | 100 | Plus |
CG4035-PD | 780 | eIF-4E-RD | 58..780 | 41..763 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 1156 | CG4035-RC | 157..904 | 16..763 | 3740 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 819..1541 | 41..763 | 3615 | 100 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 518..1240 | 41..763 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400955 | 411..39 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 9399870..9400033 | 763..600 | 820 | 100 | Minus |
3L | 28110227 | 3L | 9400419..9400519 | 511..411 | 505 | 100 | Minus |
3L | 28110227 | 3L | 9400097..9400185 | 599..511 | 445 | 100 | Minus |
X | 23542271 | X | 1158961..1159338 | 618..241 | 390 | 73.5 | Minus |
3R | 32079331 | 3R | 29026520..29026848 | 609..281 | 325 | 73.3 | Minus |
3L | 28110227 | 3L | 6665168..6665336 | 410..242 | 290 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:38:50 has no hits.
BS16311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:11 Download gff for
BS16311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4035-PC | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:33 Download gff for
BS16311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..906 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:54 Download gff for
BS16311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..906 | 9..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:54 Download gff for
BS16311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9399868..9400033 | 600..767 | 98 | <- | Minus |
3L | 9400097..9400184 | 512..599 | 100 | <- | Minus |
3L | 9400419..9400518 | 412..511 | 100 | <- | Minus |
3L | 9400583..9400953 | 41..411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:33 Download gff for
BS16311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9392968..9393133 | 600..767 | 98 | <- | Minus |
arm_3L | 9393197..9393284 | 512..599 | 100 | <- | Minus |
arm_3L | 9393519..9393618 | 412..511 | 100 | <- | Minus |
arm_3L | 9393683..9394053 | 41..411 | 100 | <- | Minus |
BS16311.complete Sequence
779 bp assembled on 2007-05-07
GenBank Submission: FJ638114
> BS16311.complete
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGTAGAAGCTTTCTAGACCAT
BS16311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 747 | CG4035-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 58..780 | 41..763 | 3615 | 100 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 58..780 | 41..763 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 1156 | CG4035-RC | 157..904 | 16..763 | 3740 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 819..1541 | 41..763 | 3615 | 100 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 518..1240 | 41..763 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400955 | 411..39 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 9399870..9400033 | 763..600 | 820 | 100 | Minus |
3L | 28110227 | 3L | 9400419..9400519 | 511..411 | 505 | 100 | Minus |
3L | 28110227 | 3L | 9400097..9400185 | 599..511 | 445 | 100 | Minus |
X | 23542271 | X | 1158961..1159338 | 618..241 | 390 | 73.5 | Minus |
3R | 32079331 | 3R | 29026520..29026848 | 609..281 | 325 | 73.3 | Minus |
3L | 28110227 | 3L | 6665168..6665336 | 410..242 | 290 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:59 has no hits.
BS16311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:29 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:02 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 153..911 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:17 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 158..904 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:30 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 153..911 | 9..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:26 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 158..904 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:26 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9399870..9400033 | 600..763 | 100 | <- | Minus |
3L | 9400097..9400184 | 512..599 | 100 | <- | Minus |
3L | 9400419..9400518 | 412..511 | 100 | <- | Minus |
3L | 9400583..9400953 | 41..411 | 100 | <- | Minus |
3L | 9402280..9402303 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:17 Download gff for
BS16311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9392970..9393133 | 600..763 | 100 | <- | Minus |
arm_3L | 9393197..9393284 | 512..599 | 100 | <- | Minus |
arm_3L | 9393519..9393618 | 412..511 | 100 | <- | Minus |
arm_3L | 9393683..9394053 | 41..411 | 100 | <- | Minus |
arm_3L | 9395380..9395403 | 17..40 | 100 | | Minus |
BS16311.pep Sequence
Translation from 16 to 762
> BS16311.pep
MVVLETEKTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNT
ATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFD
TVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITL
NKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTAD
GNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL*
BS16311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-PC | 248 | CG4035-PC | 1..248 | 1..248 | 1321 | 100 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PB | 259 | CG4035-PB | 19..259 | 8..248 | 1289 | 100 | Plus |