Clone Sequence Records
BS16313.3prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS16313.3prime
ATGGTCTAGAAAGCTTTCACCCTGCTGTCGTTGGCAATGGAGCAGGAGGA
CCAGATCCGGAGCTGGGTGGAATCTGTGCCGCGCGGGAGGTGGATGGCTC
CATCGGTTCCATTGCGATGACAGTGGCTTCTGCGGCGGACGAGGAATGTG
GATCTGTCTCCGAATACGGTGGCGCCGGCAGTGCCGCGATTCCAATGGGA
CTGGGTACACCGAGGGGCGATTGGGGAACAGGCATTCCAGCCGCTGCTGC
TGTGGGAGTGGTCAGGTTACACATGCGCATCACCTCGTCGTAGCTGGGTA
AATCCTTTTCATCCTTTTCCAGTTGATCGCGAATGCGGTTGGCCTCCACG
CTGCCGGGTTCGATGAAGAAAATGTCGCCATAGCGGTTCGATGAAGGATC
CTCCTGTGCGTTGAATACATTACGATCTGAAAATAGGTTAAGAAAAATAA
GTGAGTAGTGAATAGTGAATAGTGAAGTCTTTAAACATATAAAACTCATG
TCGACTGATAACT
BS16313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PB | 483 | CG12963-RB | 1..476 | 499..24 | 2380 | 100 | Minus |
CG12963-PA | 573 | CG12963-RA | 162..566 | 428..24 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..662 | 429..17 | 2035 | 99.5 | Minus |
CG12963-RG | 971 | CG12963-RG | 347..759 | 429..17 | 2035 | 99.5 | Minus |
CG12963-RN | 821 | CG12963-RN | 197..609 | 429..17 | 2035 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562224 | 499..17 | 2385 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-13 13:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 313..354 | 111 | 73.8 | Plus |
BS16313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:23 Download gff for
BS16313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-PB | 1..483 | 17..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:34 Download gff for
BS16313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..609 | 17..437 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:16 Download gff for
BS16313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..609 | 17..437 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:16 Download gff for
BS16313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561728..15562224 | 17..511 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:34 Download gff for
BS16313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449233..11449729 | 17..511 | 98 | | Minus |
BS16313.5prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS16313.5prime
GAAGTTATCCTTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGTGAA
AGCTTTCTAGACC
BS16313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PB | 483 | CG12963-RB | 1..483 | 17..499 | 2415 | 100 | Plus |
CG12963-PA | 573 | CG12963-RA | 162..573 | 88..499 | 2060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..662 | 87..499 | 2065 | 100 | Plus |
CG12963-RG | 971 | CG12963-RG | 347..759 | 87..499 | 2065 | 100 | Plus |
CG12963-RN | 821 | CG12963-RN | 197..609 | 87..499 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562224 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 203..162 | 111 | 73.8 | Minus |
BS16313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:16 Download gff for
BS16313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-PB | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:41 Download gff for
BS16313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..609 | 79..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:21 Download gff for
BS16313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..609 | 79..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:21 Download gff for
BS16313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561728..15562224 | 5..499 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:41 Download gff for
BS16313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449233..11449729 | 5..499 | 99 | | Plus |
BS16313.complete Sequence
515 bp assembled on 2007-05-07
GenBank Submission: FJ638115
> BS16313.complete
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGTGAA
AGCTTTCTAGACCAT
BS16313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 603 | CG12963-PK | 191..603 | 87..499 | 2065 | 100 | Plus |
CG12963-RG | 642 | CG12963-PG | 230..642 | 87..499 | 2065 | 100 | Plus |
CG12963-RN | 543 | CG12963-PN | 131..543 | 87..499 | 2065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..662 | 87..499 | 2065 | 100 | Plus |
CG12963-RG | 971 | CG12963-RG | 347..759 | 87..499 | 2065 | 100 | Plus |
CG12963-RN | 821 | CG12963-RN | 197..609 | 87..499 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562224 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 203..162 | 111 | 73.8 | Minus |
BS16313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:20 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RB | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:58 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RB | 471..967 | 5..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:35 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..608 | 79..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:23 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..608 | 79..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:23 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561742..15562223 | 17..498 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:35 Download gff for
BS16313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449247..11449728 | 17..498 | 100 | | Plus |
BS16313.pep Sequence
Translation from 16 to 498
> BS16313.pep
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAV*
BS16313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PM | 176 | CG12963-PM | 37..176 | 21..160 | 714 | 98.6 | Plus |
CG12963-PC | 178 | CG12963-PC | 42..178 | 24..160 | 710 | 100 | Plus |
CG12963-PG | 213 | CG12963-PG | 73..213 | 20..160 | 710 | 97.2 | Plus |
CG12963-PL | 169 | CG12963-PL | 9..169 | 1..160 | 708 | 88.2 | Plus |
CG12963-PJ | 179 | CG12963-PJ | 43..179 | 24..160 | 707 | 99.3 | Plus |