Clone BS16313 Report

Search the DGRC for BS16313

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG12963-RB
Protein status:BS16313.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16313.3prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS16313.3prime
ATGGTCTAGAAAGCTTTCACCCTGCTGTCGTTGGCAATGGAGCAGGAGGA
CCAGATCCGGAGCTGGGTGGAATCTGTGCCGCGCGGGAGGTGGATGGCTC
CATCGGTTCCATTGCGATGACAGTGGCTTCTGCGGCGGACGAGGAATGTG
GATCTGTCTCCGAATACGGTGGCGCCGGCAGTGCCGCGATTCCAATGGGA
CTGGGTACACCGAGGGGCGATTGGGGAACAGGCATTCCAGCCGCTGCTGC
TGTGGGAGTGGTCAGGTTACACATGCGCATCACCTCGTCGTAGCTGGGTA
AATCCTTTTCATCCTTTTCCAGTTGATCGCGAATGCGGTTGGCCTCCACG
CTGCCGGGTTCGATGAAGAAAATGTCGCCATAGCGGTTCGATGAAGGATC
CTCCTGTGCGTTGAATACATTACGATCTGAAAATAGGTTAAGAAAAATAA
GTGAGTAGTGAATAGTGAATAGTGAAGTCTTTAAACATATAAAACTCATG
TCGACTGATAACT

BS16313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PB 483 CG12963-RB 1..476 499..24 2380 100 Minus
CG12963-PA 573 CG12963-RA 162..566 428..24 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..662 429..17 2035 99.5 Minus
CG12963-RG 971 CG12963-RG 347..759 429..17 2035 99.5 Minus
CG12963-RN 821 CG12963-RN 197..609 429..17 2035 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562224 499..17 2385 99.6 Minus
Blast to na_te.dros performed 2015-02-13 13:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 313..354 111 73.8 Plus

BS16313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:23 Download gff for BS16313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-PB 1..483 17..499 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:34 Download gff for BS16313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..609 17..437 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:16 Download gff for BS16313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..609 17..437 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:16 Download gff for BS16313.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15561728..15562224 17..511 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:34 Download gff for BS16313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449233..11449729 17..511 98   Minus

BS16313.5prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS16313.5prime
GAAGTTATCCTTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGTGAA
AGCTTTCTAGACC

BS16313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PB 483 CG12963-RB 1..483 17..499 2415 100 Plus
CG12963-PA 573 CG12963-RA 162..573 88..499 2060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..662 87..499 2065 100 Plus
CG12963-RG 971 CG12963-RG 347..759 87..499 2065 100 Plus
CG12963-RN 821 CG12963-RN 197..609 87..499 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562224 17..499 2415 100 Plus
Blast to na_te.dros performed 2015-02-11 16:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 203..162 111 73.8 Minus

BS16313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:16 Download gff for BS16313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-PB 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:41 Download gff for BS16313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..609 79..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:21 Download gff for BS16313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..609 79..499 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:21 Download gff for BS16313.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15561728..15562224 5..499 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:41 Download gff for BS16313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449233..11449729 5..499 99   Plus

BS16313.complete Sequence

515 bp assembled on 2007-05-07

GenBank Submission: FJ638115

> BS16313.complete
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGTGAA
AGCTTTCTAGACCAT

BS16313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 603 CG12963-PK 191..603 87..499 2065 100 Plus
CG12963-RG 642 CG12963-PG 230..642 87..499 2065 100 Plus
CG12963-RN 543 CG12963-PN 131..543 87..499 2065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..662 87..499 2065 100 Plus
CG12963-RG 971 CG12963-RG 347..759 87..499 2065 100 Plus
CG12963-RN 821 CG12963-RN 197..609 87..499 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562224 17..499 2415 100 Plus
Blast to na_te.dros performed 2014-11-27 14:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 203..162 111 73.8 Minus

BS16313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:20 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:58 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 471..967 5..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:35 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..608 79..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:23 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..608 79..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:23 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15561742..15562223 17..498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:35 Download gff for BS16313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449247..11449728 17..498 100   Plus

BS16313.pep Sequence

Translation from 16 to 498

> BS16313.pep
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAV*

BS16313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PM 176 CG12963-PM 37..176 21..160 714 98.6 Plus
CG12963-PC 178 CG12963-PC 42..178 24..160 710 100 Plus
CG12963-PG 213 CG12963-PG 73..213 20..160 710 97.2 Plus
CG12963-PL 169 CG12963-PL 9..169 1..160 708 88.2 Plus
CG12963-PJ 179 CG12963-PJ 43..179 24..160 707 99.3 Plus