Clone Sequence Records
BS16314.3prime Sequence
846 bp (810 high quality bases) assembled on 2007-05-15
> BS16314.3prime
ATGGTCTAGAAAGCTTTTAGCATATTTCTGTGGAGTTTTTGCTTAAATCA
CAATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCC
ATTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAA
TAATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGG
ACCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATC
TGTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAG
GTTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGT
ATATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGT
CCACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTT
GAAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATT
ACTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAA
ATAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACT
GATCCCCAATGCGGTAAACGATTTGATCCTGTTGTTGAACTTTGTTAATG
ATGTAGTTGCTAACTTTTGTATCTTCTCTTACACAAAGTACATAATCCCC
TGCTATCGAGTTACTATCACGGACTAAAAACACTCCCCGCTCGCGTTCGT
TCATCAAAACTTCAGTAGCATCCTGTCTAGACATGGGACCAAAGTACCAG
CTGTTCCTATCAGAAACGTCAAATGTATCCATGTCGACTGATAACT
BS16314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PC | 816 | Crk-RC | 1..816 | 832..17 | 4080 | 100 | Minus |
CG1587-PA | 816 | Crk-RA | 1..816 | 832..17 | 4080 | 100 | Minus |
CG1587-PB | 762 | Crk-RB | 151..762 | 628..17 | 3060 | 100 | Minus |
CG1587-PB | 762 | Crk-RB | 1..151 | 832..682 | 755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 1197 | CG1587-RA | 232..1048 | 832..16 | 4085 | 100 | Minus |
Crk-RC | 1122 | CG1587-RC | 157..973 | 832..16 | 4085 | 100 | Minus |
Crk-RE | 1173 | CG1587-RE | 262..1024 | 778..16 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213016 | 241..16 | 1130 | 100 | Minus |
4 | 1348131 | 4 | 211588..211795 | 679..472 | 1040 | 100 | Minus |
4 | 1348131 | 4 | 211854..211982 | 472..344 | 645 | 100 | Minus |
4 | 1348131 | 4 | 210556..210680 | 802..678 | 625 | 100 | Minus |
4 | 1348131 | 4 | 212625..212729 | 346..242 | 525 | 100 | Minus |
4 | 1348131 | 4 | 215957..216052 | 679..584 | 435 | 96.9 | Minus |
4 | 1348131 | 4 | 216168..216226 | 472..414 | 280 | 98.3 | Minus |
4 | 1348131 | 4 | 216051..216111 | 534..474 | 275 | 96.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:09:25 has no hits.
BS16314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:34 Download gff for
BS16314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PA | 1..816 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:58 Download gff for
BS16314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..973 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:25 Download gff for
BS16314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..973 | 16..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:25 Download gff for
BS16314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210558..210680 | 678..800 | 100 | -> | Minus |
4 | 210452..210486 | 801..835 | 97 | -> | Minus |
4 | 211590..211794 | 473..677 | 100 | -> | Minus |
4 | 211854..211982 | 344..472 | 100 | -> | Minus |
4 | 212628..212729 | 242..343 | 100 | -> | Minus |
4 | 212791..213016 | 16..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:58 Download gff for
BS16314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 233254..233355 | 242..343 | 100 | -> | Minus |
arm_4 | 232480..232608 | 344..472 | 100 | -> | Minus |
arm_4 | 231078..231112 | 801..835 | 97 | -> | Minus |
arm_4 | 231184..231306 | 678..800 | 100 | -> | Minus |
arm_4 | 232216..232420 | 473..677 | 100 | -> | Minus |
arm_4 | 233417..233642 | 16..241 | 100 | | Minus |
BS16314.5prime Sequence
846 bp (800 high quality bases) assembled on 2007-05-15
> BS16314.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCTAAAAGCTTTCTAGACC
BS16314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PC | 816 | Crk-RC | 1..816 | 17..832 | 4080 | 100 | Plus |
CG1587-PA | 816 | Crk-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG1587-PB | 762 | Crk-RB | 151..762 | 221..832 | 3060 | 100 | Plus |
CG1587-PB | 762 | Crk-RB | 1..151 | 17..167 | 755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 1197 | CG1587-RA | 232..1048 | 17..833 | 4085 | 100 | Plus |
Crk-RC | 1122 | CG1587-RC | 157..973 | 17..833 | 4085 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..1024 | 71..833 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213016 | 608..833 | 1130 | 100 | Plus |
4 | 1348131 | 4 | 211588..211795 | 170..377 | 1040 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 377..505 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210680 | 47..171 | 625 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 503..607 | 525 | 100 | Plus |
4 | 1348131 | 4 | 215957..216052 | 170..265 | 435 | 96.9 | Plus |
4 | 1348131 | 4 | 216168..216226 | 377..435 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 315..375 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:52:09 has no hits.
BS16314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:26 Download gff for
BS16314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:16 Download gff for
BS16314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..973 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:33 Download gff for
BS16314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..973 | 14..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:33 Download gff for
BS16314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210452..210486 | 14..48 | 97 | -> | Plus |
4 | 210558..210680 | 49..171 | 100 | -> | Plus |
4 | 211590..211794 | 172..376 | 100 | -> | Plus |
4 | 211854..211982 | 377..505 | 100 | -> | Plus |
4 | 212628..212729 | 506..607 | 100 | -> | Plus |
4 | 212791..213016 | 608..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:16 Download gff for
BS16314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231078..231112 | 14..48 | 97 | -> | Plus |
arm_4 | 231184..231306 | 49..171 | 100 | -> | Plus |
arm_4 | 232216..232420 | 172..376 | 100 | -> | Plus |
arm_4 | 232480..232608 | 377..505 | 100 | -> | Plus |
arm_4 | 233254..233355 | 506..607 | 100 | -> | Plus |
arm_4 | 233417..233642 | 608..833 | 100 | | Plus |
BS16314.complete Sequence
848 bp assembled on 2007-05-07
GenBank Submission: FJ638116
> BS16314.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCTAAAAGCTTTCTAGACCAT
BS16314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 816 | CG1587-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Crk-RC | 816 | CG1587-PC | 1..816 | 17..832 | 4080 | 100 | Plus |
Crk-RE | 792 | CG1587-PE | 31..792 | 71..832 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 1197 | CG1587-RA | 232..1048 | 17..833 | 4085 | 100 | Plus |
Crk-RC | 1122 | CG1587-RC | 157..973 | 17..833 | 4085 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..1024 | 71..833 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213016 | 608..833 | 1130 | 100 | Plus |
4 | 1348131 | 4 | 211588..211795 | 170..377 | 1040 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 377..505 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210680 | 47..171 | 625 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 503..607 | 525 | 100 | Plus |
4 | 1348131 | 4 | 215957..216052 | 170..265 | 435 | 96.9 | Plus |
4 | 1348131 | 4 | 216168..216226 | 377..435 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 315..375 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:48 has no hits.
BS16314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:56 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:21 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 158..977 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:04 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 157..970 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:56 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 158..977 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:28 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 157..970 | 17..830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:28 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210455..210486 | 17..48 | 100 | -> | Plus |
4 | 210558..210680 | 49..171 | 100 | -> | Plus |
4 | 211590..211794 | 172..376 | 100 | -> | Plus |
4 | 211854..211982 | 377..505 | 100 | -> | Plus |
4 | 212628..212729 | 506..607 | 100 | -> | Plus |
4 | 212791..213013 | 608..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:04 Download gff for
BS16314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231081..231112 | 17..48 | 100 | -> | Plus |
arm_4 | 231184..231306 | 49..171 | 100 | -> | Plus |
arm_4 | 232216..232420 | 172..376 | 100 | -> | Plus |
arm_4 | 232480..232608 | 377..505 | 100 | -> | Plus |
arm_4 | 233254..233355 | 506..607 | 100 | -> | Plus |
arm_4 | 233417..233639 | 608..830 | 100 | | Plus |
BS16314.pep Sequence
Translation from 16 to 831
> BS16314.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL
KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS
GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL
PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF
PFTHVEFVDDCDLSKNSTEIC*
BS16314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-PA | 271 | CG1587-PA | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PC | 271 | CG1587-PC | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PE | 263 | CG1587-PE | 1..263 | 1..271 | 1367 | 97 | Plus |
Crk-PB | 253 | CG1587-PB | 1..253 | 1..271 | 1318 | 93.4 | Plus |
Crk-PD | 184 | CG1587-PD | 1..168 | 1..168 | 864 | 97 | Plus |