Clone BS16314 Report

Search the DGRC for BS16314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCrk-RA
Protein status:BS16314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16314.3prime Sequence

846 bp (810 high quality bases) assembled on 2007-05-15

> BS16314.3prime
ATGGTCTAGAAAGCTTTTAGCATATTTCTGTGGAGTTTTTGCTTAAATCA
CAATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCC
ATTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAA
TAATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGG
ACCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATC
TGTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAG
GTTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGT
ATATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGT
CCACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTT
GAAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATT
ACTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAA
ATAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACT
GATCCCCAATGCGGTAAACGATTTGATCCTGTTGTTGAACTTTGTTAATG
ATGTAGTTGCTAACTTTTGTATCTTCTCTTACACAAAGTACATAATCCCC
TGCTATCGAGTTACTATCACGGACTAAAAACACTCCCCGCTCGCGTTCGT
TCATCAAAACTTCAGTAGCATCCTGTCTAGACATGGGACCAAAGTACCAG
CTGTTCCTATCAGAAACGTCAAATGTATCCATGTCGACTGATAACT

BS16314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PC 816 Crk-RC 1..816 832..17 4080 100 Minus
CG1587-PA 816 Crk-RA 1..816 832..17 4080 100 Minus
CG1587-PB 762 Crk-RB 151..762 628..17 3060 100 Minus
CG1587-PB 762 Crk-RB 1..151 832..682 755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 1197 CG1587-RA 232..1048 832..16 4085 100 Minus
Crk-RC 1122 CG1587-RC 157..973 832..16 4085 100 Minus
Crk-RE 1173 CG1587-RE 262..1024 778..16 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213016 241..16 1130 100 Minus
4 1348131 4 211588..211795 679..472 1040 100 Minus
4 1348131 4 211854..211982 472..344 645 100 Minus
4 1348131 4 210556..210680 802..678 625 100 Minus
4 1348131 4 212625..212729 346..242 525 100 Minus
4 1348131 4 215957..216052 679..584 435 96.9 Minus
4 1348131 4 216168..216226 472..414 280 98.3 Minus
4 1348131 4 216051..216111 534..474 275 96.7 Minus
Blast to na_te.dros performed on 2015-02-04 21:09:25 has no hits.

BS16314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:34 Download gff for BS16314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PA 1..816 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:58 Download gff for BS16314.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..973 16..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:25 Download gff for BS16314.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..973 16..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:25 Download gff for BS16314.3prime
Subject Subject Range Query Range Percent Splice Strand
4 210558..210680 678..800 100 -> Minus
4 210452..210486 801..835 97 -> Minus
4 211590..211794 473..677 100 -> Minus
4 211854..211982 344..472 100 -> Minus
4 212628..212729 242..343 100 -> Minus
4 212791..213016 16..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:58 Download gff for BS16314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 233254..233355 242..343 100 -> Minus
arm_4 232480..232608 344..472 100 -> Minus
arm_4 231078..231112 801..835 97 -> Minus
arm_4 231184..231306 678..800 100 -> Minus
arm_4 232216..232420 473..677 100 -> Minus
arm_4 233417..233642 16..241 100   Minus

BS16314.5prime Sequence

846 bp (800 high quality bases) assembled on 2007-05-15

> BS16314.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCTAAAAGCTTTCTAGACC

BS16314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PC 816 Crk-RC 1..816 17..832 4080 100 Plus
CG1587-PA 816 Crk-RA 1..816 17..832 4080 100 Plus
CG1587-PB 762 Crk-RB 151..762 221..832 3060 100 Plus
CG1587-PB 762 Crk-RB 1..151 17..167 755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 1197 CG1587-RA 232..1048 17..833 4085 100 Plus
Crk-RC 1122 CG1587-RC 157..973 17..833 4085 100 Plus
Crk-RE 1173 CG1587-RE 262..1024 71..833 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213016 608..833 1130 100 Plus
4 1348131 4 211588..211795 170..377 1040 100 Plus
4 1348131 4 211854..211982 377..505 645 100 Plus
4 1348131 4 210556..210680 47..171 625 100 Plus
4 1348131 4 212625..212729 503..607 525 100 Plus
4 1348131 4 215957..216052 170..265 435 96.9 Plus
4 1348131 4 216168..216226 377..435 280 98.3 Plus
4 1348131 4 216051..216111 315..375 275 96.7 Plus
Blast to na_te.dros performed on 2015-02-11 02:52:09 has no hits.

BS16314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:26 Download gff for BS16314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:16 Download gff for BS16314.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..973 14..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:33 Download gff for BS16314.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..973 14..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:33 Download gff for BS16314.5prime
Subject Subject Range Query Range Percent Splice Strand
4 210452..210486 14..48 97 -> Plus
4 210558..210680 49..171 100 -> Plus
4 211590..211794 172..376 100 -> Plus
4 211854..211982 377..505 100 -> Plus
4 212628..212729 506..607 100 -> Plus
4 212791..213016 608..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:16 Download gff for BS16314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 231078..231112 14..48 97 -> Plus
arm_4 231184..231306 49..171 100 -> Plus
arm_4 232216..232420 172..376 100 -> Plus
arm_4 232480..232608 377..505 100 -> Plus
arm_4 233254..233355 506..607 100 -> Plus
arm_4 233417..233642 608..833 100   Plus

BS16314.complete Sequence

848 bp assembled on 2007-05-07

GenBank Submission: FJ638116

> BS16314.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCTAAAAGCTTTCTAGACCAT

BS16314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 816 CG1587-PA 1..816 17..832 4080 100 Plus
Crk-RC 816 CG1587-PC 1..816 17..832 4080 100 Plus
Crk-RE 792 CG1587-PE 31..792 71..832 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 1197 CG1587-RA 232..1048 17..833 4085 100 Plus
Crk-RC 1122 CG1587-RC 157..973 17..833 4085 100 Plus
Crk-RE 1173 CG1587-RE 262..1024 71..833 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213016 608..833 1130 100 Plus
4 1348131 4 211588..211795 170..377 1040 100 Plus
4 1348131 4 211854..211982 377..505 645 100 Plus
4 1348131 4 210556..210680 47..171 625 100 Plus
4 1348131 4 212625..212729 503..607 525 100 Plus
4 1348131 4 215957..216052 170..265 435 96.9 Plus
4 1348131 4 216168..216226 377..435 280 98.3 Plus
4 1348131 4 216051..216111 315..375 275 96.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:48 has no hits.

BS16314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:56 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:21 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 158..977 14..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:04 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 157..970 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:56 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 158..977 14..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:28 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 157..970 17..830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:28 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
4 210455..210486 17..48 100 -> Plus
4 210558..210680 49..171 100 -> Plus
4 211590..211794 172..376 100 -> Plus
4 211854..211982 377..505 100 -> Plus
4 212628..212729 506..607 100 -> Plus
4 212791..213013 608..830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:04 Download gff for BS16314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 231081..231112 17..48 100 -> Plus
arm_4 231184..231306 49..171 100 -> Plus
arm_4 232216..232420 172..376 100 -> Plus
arm_4 232480..232608 377..505 100 -> Plus
arm_4 233254..233355 506..607 100 -> Plus
arm_4 233417..233639 608..830 100   Plus

BS16314.pep Sequence

Translation from 16 to 831

> BS16314.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL
KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS
GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL
PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF
PFTHVEFVDDCDLSKNSTEIC*

BS16314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-PA 271 CG1587-PA 1..271 1..271 1436 100 Plus
Crk-PC 271 CG1587-PC 1..271 1..271 1436 100 Plus
Crk-PE 263 CG1587-PE 1..263 1..271 1367 97 Plus
Crk-PB 253 CG1587-PB 1..253 1..271 1318 93.4 Plus
Crk-PD 184 CG1587-PD 1..168 1..168 864 97 Plus