Clone Sequence Records
BS16319.3prime Sequence
810 bp (810 high quality bases) assembled on 2007-05-15
> BS16319.3prime
ATGGTCTAGAAAGCTTTTAGGTGGCATTCAGGAAGCCCTCGTTCTTGTAG
ACCTCGATCACGTTCTCGATGATCTCCCACTGGTTCTCTCGGGTGAAGTC
CTTGACCAAGGGCTTGTACCACATGGCGGATTCGTCGGACTCGTCGGTTA
GCGGCACCTGGATGCCGTAGGTCTGGAGGGCCAGCGACAGGCACCCAATG
GCCACATGGGTGGGCTTGTACTTGAGGATATTGGCGCTGTGGTGAAAGTC
TTGCAGATACGAGGCGGCTGCCTTGGCAATGGGCACCGAGTTCCACACCT
CAGTGCCCACCCAGTCTTGTAGGGTCTTCATGTAGTGGAGTAAGTACTTG
TGGGCCAGATCTATGTTGAGATCGAAGCACAGGGTGCGCGTGATGAGCAG
CTCAGCCTGGACAATGGCATCCCGCATCGACCAGTACTCATCGTTCAGGT
CGACTGGATCATTGCCCCGGTTAAGGGTGCAGTATGCCACGTTGATGACA
TCGCGTATCTTGACACTTTCGTCTTCCTTAATTTTGCCAGCCAAGTACAG
CGAGCCCGCGGCAATGAGGAACTCATCGTAGTCGCTGGCCTTGACCTCGC
GGAAGAAGCGATGGAACACTATGGCCGCACAGGCCGCCGTCAGCGGTTTC
ATTTTCAACTTGGCAGCGCACTCAAAGATGTACATCGGCACCACGCCGGG
TTTGTTCATTTTGCGATAGTCGATGGGCTTCATGGTCTGCGCCTTGTTCA
ACTCCACGTGCTGCTGCATCGACATGACATCCAAAACGTTTTTCATGTCG
ACTGATAACT
BS16319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31232-PA | 1302 | CG31232-RA | 522..1302 | 797..17 | 3905 | 100 | Minus |
CG31232-PE | 780 | CG31232-RE | 1..780 | 796..17 | 3900 | 100 | Minus |
CG31232-PB | 780 | CG31232-RB | 1..780 | 796..17 | 3900 | 100 | Minus |
CG31232-PC | 780 | CG31232-RC | 1..780 | 796..17 | 3900 | 100 | Minus |
CG31232-PD | 780 | CG31232-RD | 1..780 | 796..17 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 61..841 | 797..17 | 3905 | 100 | Minus |
koko-RD | 1177 | CG44010-RD | 116..896 | 797..17 | 3905 | 100 | Minus |
koko-RC | 1247 | CG44010-RC | 186..966 | 797..17 | 3905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404445 | 568..17 | 2760 | 100 | Minus |
3R | 32079331 | 3R | 18403688..18403833 | 714..569 | 730 | 100 | Minus |
3R | 32079331 | 3R | 18403539..18403622 | 797..714 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:12:29 has no hits.
BS16319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:29 Download gff for
BS16319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31232-PA | 514..1302 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:08 Download gff for
BS16319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..971 | 12..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:28 Download gff for
BS16319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..971 | 12..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:28 Download gff for
BS16319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403531..18403622 | 714..803 | 96 | -> | Minus |
3R | 18403689..18403833 | 569..713 | 100 | -> | Minus |
3R | 18403894..18404448 | 14..568 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:08 Download gff for
BS16319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229253..14229344 | 714..803 | 96 | -> | Minus |
arm_3R | 14229411..14229555 | 569..713 | 100 | -> | Minus |
arm_3R | 14229616..14230170 | 14..568 | 99 | -> | Minus |
BS16319.5prime Sequence
810 bp (767 high quality bases) assembled on 2007-05-15
> BS16319.5prime
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCTAAAAGC
TTTCTAGACC
BS16319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31232-PA | 1302 | CG31232-RA | 522..1302 | 16..796 | 3905 | 100 | Plus |
CG31232-PE | 780 | CG31232-RE | 1..780 | 17..796 | 3900 | 100 | Plus |
CG31232-PB | 780 | CG31232-RB | 1..780 | 17..796 | 3900 | 100 | Plus |
CG31232-PC | 780 | CG31232-RC | 1..780 | 17..796 | 3900 | 100 | Plus |
CG31232-PD | 780 | CG31232-RD | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 61..841 | 16..796 | 3905 | 100 | Plus |
koko-RD | 1177 | CG44010-RD | 116..896 | 16..796 | 3905 | 100 | Plus |
koko-RC | 1247 | CG44010-RC | 186..966 | 16..796 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404445 | 245..796 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 18403688..18403833 | 99..244 | 730 | 100 | Plus |
3R | 32079331 | 3R | 18403539..18403622 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:37:44 has no hits.
BS16319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:21 Download gff for
BS16319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31232-PA | 514..1302 | 10..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:15:36 Download gff for
BS16319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..971 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:08 Download gff for
BS16319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..971 | 10..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:08 Download gff for
BS16319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403531..18403622 | 10..99 | 96 | -> | Plus |
3R | 18403689..18403833 | 100..244 | 100 | -> | Plus |
3R | 18403894..18404448 | 245..799 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:15:36 Download gff for
BS16319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229253..14229344 | 10..99 | 96 | -> | Plus |
arm_3R | 14229411..14229555 | 100..244 | 100 | -> | Plus |
arm_3R | 14229616..14230170 | 245..799 | 99 | -> | Plus |
BS16319.complete Sequence
812 bp assembled on 2007-05-07
GenBank Submission: FJ638117
> BS16319.complete
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCTAAAAGC
TTTCTAGACCAT
BS16319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 780 | CG44010-PE | 1..780 | 17..796 | 3900 | 100 | Plus |
koko-RD | 780 | CG44010-PD | 1..780 | 17..796 | 3900 | 100 | Plus |
koko-RC | 780 | CG44010-PC | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 61..841 | 16..796 | 3905 | 100 | Plus |
koko-RD | 1177 | CG44010-RD | 116..896 | 16..796 | 3905 | 100 | Plus |
koko-RC | 1247 | CG44010-RC | 186..966 | 16..796 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404445 | 245..796 | 2760 | 100 | Plus |
3R | 32079331 | 3R | 18403688..18403833 | 99..244 | 730 | 100 | Plus |
3R | 32079331 | 3R | 18403539..18403622 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:58:15 has no hits.
BS16319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:48 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 514..1302 | 10..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:12 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 822..1615 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:24 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 187..964 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:48 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 822..1615 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:22 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 187..964 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:22 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403540..18403622 | 17..99 | 100 | -> | Plus |
3R | 18403689..18403833 | 100..244 | 100 | -> | Plus |
3R | 18403894..18404443 | 245..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:24 Download gff for
BS16319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229262..14229344 | 17..99 | 100 | -> | Plus |
arm_3R | 14229411..14229555 | 100..244 | 100 | -> | Plus |
arm_3R | 14229616..14230165 | 245..794 | 100 | | Plus |
BS16319.pep Sequence
Translation from 16 to 795
> BS16319.pep
MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK
PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV
INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK
YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI
GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY
KNEGFLNAT*
BS16319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-PE | 259 | CG44010-PE | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PD | 259 | CG44010-PD | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PC | 259 | CG44010-PC | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PB | 259 | CG44010-PB | 1..259 | 1..259 | 1361 | 100 | Plus |