Clone BS16319 Report

Search the DGRC for BS16319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptkoko-RB
Protein status:BS16319.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16319.3prime Sequence

810 bp (810 high quality bases) assembled on 2007-05-15

> BS16319.3prime
ATGGTCTAGAAAGCTTTTAGGTGGCATTCAGGAAGCCCTCGTTCTTGTAG
ACCTCGATCACGTTCTCGATGATCTCCCACTGGTTCTCTCGGGTGAAGTC
CTTGACCAAGGGCTTGTACCACATGGCGGATTCGTCGGACTCGTCGGTTA
GCGGCACCTGGATGCCGTAGGTCTGGAGGGCCAGCGACAGGCACCCAATG
GCCACATGGGTGGGCTTGTACTTGAGGATATTGGCGCTGTGGTGAAAGTC
TTGCAGATACGAGGCGGCTGCCTTGGCAATGGGCACCGAGTTCCACACCT
CAGTGCCCACCCAGTCTTGTAGGGTCTTCATGTAGTGGAGTAAGTACTTG
TGGGCCAGATCTATGTTGAGATCGAAGCACAGGGTGCGCGTGATGAGCAG
CTCAGCCTGGACAATGGCATCCCGCATCGACCAGTACTCATCGTTCAGGT
CGACTGGATCATTGCCCCGGTTAAGGGTGCAGTATGCCACGTTGATGACA
TCGCGTATCTTGACACTTTCGTCTTCCTTAATTTTGCCAGCCAAGTACAG
CGAGCCCGCGGCAATGAGGAACTCATCGTAGTCGCTGGCCTTGACCTCGC
GGAAGAAGCGATGGAACACTATGGCCGCACAGGCCGCCGTCAGCGGTTTC
ATTTTCAACTTGGCAGCGCACTCAAAGATGTACATCGGCACCACGCCGGG
TTTGTTCATTTTGCGATAGTCGATGGGCTTCATGGTCTGCGCCTTGTTCA
ACTCCACGTGCTGCTGCATCGACATGACATCCAAAACGTTTTTCATGTCG
ACTGATAACT

BS16319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31232-PA 1302 CG31232-RA 522..1302 797..17 3905 100 Minus
CG31232-PE 780 CG31232-RE 1..780 796..17 3900 100 Minus
CG31232-PB 780 CG31232-RB 1..780 796..17 3900 100 Minus
CG31232-PC 780 CG31232-RC 1..780 796..17 3900 100 Minus
CG31232-PD 780 CG31232-RD 1..780 796..17 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 61..841 797..17 3905 100 Minus
koko-RD 1177 CG44010-RD 116..896 797..17 3905 100 Minus
koko-RC 1247 CG44010-RC 186..966 797..17 3905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404445 568..17 2760 100 Minus
3R 32079331 3R 18403688..18403833 714..569 730 100 Minus
3R 32079331 3R 18403539..18403622 797..714 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:12:29 has no hits.

BS16319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:29 Download gff for BS16319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31232-PA 514..1302 17..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:08 Download gff for BS16319.3prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..971 12..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:28 Download gff for BS16319.3prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..971 12..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:28 Download gff for BS16319.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18403531..18403622 714..803 96 -> Minus
3R 18403689..18403833 569..713 100 -> Minus
3R 18403894..18404448 14..568 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:08 Download gff for BS16319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229253..14229344 714..803 96 -> Minus
arm_3R 14229411..14229555 569..713 100 -> Minus
arm_3R 14229616..14230170 14..568 99 -> Minus

BS16319.5prime Sequence

810 bp (767 high quality bases) assembled on 2007-05-15

> BS16319.5prime
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCTAAAAGC
TTTCTAGACC

BS16319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31232-PA 1302 CG31232-RA 522..1302 16..796 3905 100 Plus
CG31232-PE 780 CG31232-RE 1..780 17..796 3900 100 Plus
CG31232-PB 780 CG31232-RB 1..780 17..796 3900 100 Plus
CG31232-PC 780 CG31232-RC 1..780 17..796 3900 100 Plus
CG31232-PD 780 CG31232-RD 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 61..841 16..796 3905 100 Plus
koko-RD 1177 CG44010-RD 116..896 16..796 3905 100 Plus
koko-RC 1247 CG44010-RC 186..966 16..796 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404445 245..796 2760 100 Plus
3R 32079331 3R 18403688..18403833 99..244 730 100 Plus
3R 32079331 3R 18403539..18403622 16..99 420 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:37:44 has no hits.

BS16319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:21 Download gff for BS16319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31232-PA 514..1302 10..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:15:36 Download gff for BS16319.5prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..971 10..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:08 Download gff for BS16319.5prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..971 10..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:08 Download gff for BS16319.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18403531..18403622 10..99 96 -> Plus
3R 18403689..18403833 100..244 100 -> Plus
3R 18403894..18404448 245..799 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:15:36 Download gff for BS16319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229253..14229344 10..99 96 -> Plus
arm_3R 14229411..14229555 100..244 100 -> Plus
arm_3R 14229616..14230170 245..799 99 -> Plus

BS16319.complete Sequence

812 bp assembled on 2007-05-07

GenBank Submission: FJ638117

> BS16319.complete
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCTAAAAGC
TTTCTAGACCAT

BS16319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 780 CG44010-PE 1..780 17..796 3900 100 Plus
koko-RD 780 CG44010-PD 1..780 17..796 3900 100 Plus
koko-RC 780 CG44010-PC 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 61..841 16..796 3905 100 Plus
koko-RD 1177 CG44010-RD 116..896 16..796 3905 100 Plus
koko-RC 1247 CG44010-RC 186..966 16..796 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404445 245..796 2760 100 Plus
3R 32079331 3R 18403688..18403833 99..244 730 100 Plus
3R 32079331 3R 18403539..18403622 16..99 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:58:15 has no hits.

BS16319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:48 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 514..1302 10..796 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:12 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 822..1615 10..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:24 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RC 187..964 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:48 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 822..1615 10..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:22 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RC 187..964 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:22 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18403540..18403622 17..99 100 -> Plus
3R 18403689..18403833 100..244 100 -> Plus
3R 18403894..18404443 245..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:24 Download gff for BS16319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229262..14229344 17..99 100 -> Plus
arm_3R 14229411..14229555 100..244 100 -> Plus
arm_3R 14229616..14230165 245..794 100   Plus

BS16319.pep Sequence

Translation from 16 to 795

> BS16319.pep
MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK
PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV
INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK
YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI
GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY
KNEGFLNAT*

BS16319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
koko-PE 259 CG44010-PE 1..259 1..259 1361 100 Plus
koko-PD 259 CG44010-PD 1..259 1..259 1361 100 Plus
koko-PC 259 CG44010-PC 1..259 1..259 1361 100 Plus
koko-PB 259 CG44010-PB 1..259 1..259 1361 100 Plus