Clone Sequence Records
BS16321.3prime Sequence
729 bp (729 high quality bases) assembled on 2007-05-15
> BS16321.3prime
ATGGTCTAGAAAGCTTCTAGACCTTGGGCGCAGCTGGCGGGGATTGGTGC
GGCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGC
CGTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCC
AGCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGC
ACCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAA
AACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCG
GCAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCA
TTGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTA
AATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATC
CGCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAG
TCCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGAC
GTAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCAC
CCCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGA
TTCGCCTGCTGCATGTGCTGACTATAGCCCATCATCGATAGCAGAACTAA
TCCCAGTGCTGTCATGTCGACTGATAACT
BS16321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 1..699 | 715..17 | 3495 | 100 | Minus |
CG14704-PB | 648 | PGRP-LB-RB | 1..648 | 664..17 | 3240 | 100 | Minus |
CG14704-PA | 648 | PGRP-LB-RA | 1..648 | 664..17 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 397..1097 | 717..17 | 3505 | 100 | Minus |
PGRP-LB-RD | 926 | CG14704-RD | 106..768 | 679..17 | 3315 | 100 | Minus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1076 | 678..17 | 3310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 310..679 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11453007..11453299 | 17..309 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 11457585..11457624 | 678..717 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:11:20 has no hits.
BS16321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:39 Download gff for
BS16321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:21 Download gff for
BS16321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 12..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:31 Download gff for
BS16321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 12..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:31 Download gff for
BS16321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 12..309 | 99 | <- | Plus |
3R | 11453452..11453820 | 310..678 | 100 | <- | Plus |
3R | 11457586..11457629 | 679..723 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:21 Download gff for
BS16321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 12..309 | 99 | <- | Plus |
arm_3R | 7279174..7279542 | 310..678 | 100 | <- | Plus |
arm_3R | 7283308..7283351 | 679..723 | 95 | | Plus |
BS16321.5prime Sequence
729 bp (729 high quality bases) assembled on 2007-05-15
> BS16321.5prime
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCTAGAAGCTTTCTAGACC
BS16321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 1..699 | 17..715 | 3495 | 100 | Plus |
CG14704-PB | 648 | PGRP-LB-RB | 1..648 | 68..715 | 3240 | 100 | Plus |
CG14704-PA | 648 | PGRP-LB-RA | 1..648 | 68..715 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 397..1097 | 15..715 | 3505 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 106..768 | 53..715 | 3315 | 100 | Plus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1076 | 54..715 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 422..53 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11453007..11453299 | 715..423 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 11457585..11457624 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:19:56 has no hits.
BS16321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:41 Download gff for
BS16321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:52:09 Download gff for
BS16321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:26 Download gff for
BS16321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:26 Download gff for
BS16321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 423..720 | 99 | <- | Minus |
3R | 11453452..11453820 | 54..422 | 100 | <- | Minus |
3R | 11457586..11457629 | 9..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:52:09 Download gff for
BS16321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 423..720 | 99 | <- | Minus |
arm_3R | 7279174..7279542 | 54..422 | 100 | <- | Minus |
arm_3R | 7283308..7283351 | 9..53 | 95 | | Minus |
BS16321.complete Sequence
731 bp assembled on 2007-05-07
GenBank Submission: FJ638118
> BS16321.complete
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCTAGAAGCTTTCTAGACCAT
BS16321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 699 | CG14704-PC | 1..699 | 17..715 | 3495 | 100 | Plus |
PGRP-LB-RD | 768 | CG14704-PD | 106..768 | 53..715 | 3315 | 100 | Plus |
PGRP-LB-RF | 648 | CG14704-PF | 1..648 | 68..715 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 397..1097 | 15..715 | 3505 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 106..768 | 53..715 | 3315 | 100 | Plus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1076 | 54..715 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 422..53 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11453007..11453299 | 715..423 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 11457585..11457624 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:37:34 has no hits.
BS16321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:49 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:14 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:48 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 399..1097 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:49 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:51 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 399..1097 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:51 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453007..11453299 | 423..715 | 100 | <- | Minus |
3R | 11453452..11453820 | 54..422 | 100 | <- | Minus |
3R | 11457586..11457622 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:48 Download gff for
BS16321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278729..7279021 | 423..715 | 100 | <- | Minus |
arm_3R | 7279174..7279542 | 54..422 | 100 | <- | Minus |
arm_3R | 7283308..7283344 | 17..53 | 100 | | Minus |
BS16321.pep Sequence
Translation from 16 to 714
> BS16321.pep
MTALGLVLLSMMGYSQHMQQANLGDGVATARLLSRSDWGARLPKSVEHFQ
GPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIG
GDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNL
IAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTHINDTEG
VSSTTAPVVPHVHPQAAAPQKPHQSPPAAPKV*
BS16321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-PC | 232 | CG14704-PC | 1..232 | 1..232 | 1260 | 100 | Plus |
PGRP-LB-PD | 255 | CG14704-PD | 31..255 | 8..232 | 1208 | 98.2 | Plus |
PGRP-LB-PF | 215 | CG14704-PF | 1..215 | 18..232 | 1176 | 100 | Plus |
PGRP-LB-PE | 215 | CG14704-PE | 1..215 | 18..232 | 1176 | 100 | Plus |
PGRP-LB-PA | 215 | CG14704-PA | 1..215 | 18..232 | 1176 | 100 | Plus |