Clone BS16321 Report

Search the DGRC for BS16321

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LB-RC
Protein status:BS16321.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16321.3prime Sequence

729 bp (729 high quality bases) assembled on 2007-05-15

> BS16321.3prime
ATGGTCTAGAAAGCTTCTAGACCTTGGGCGCAGCTGGCGGGGATTGGTGC
GGCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGC
CGTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCC
AGCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGC
ACCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAA
AACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCG
GCAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCA
TTGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTA
AATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATC
CGCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAG
TCCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGAC
GTAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCAC
CCCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGA
TTCGCCTGCTGCATGTGCTGACTATAGCCCATCATCGATAGCAGAACTAA
TCCCAGTGCTGTCATGTCGACTGATAACT

BS16321.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 1..699 715..17 3495 100 Minus
CG14704-PB 648 PGRP-LB-RB 1..648 664..17 3240 100 Minus
CG14704-PA 648 PGRP-LB-RA 1..648 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 397..1097 717..17 3505 100 Minus
PGRP-LB-RD 926 CG14704-RD 106..768 679..17 3315 100 Minus
PGRP-LB-RF 1234 CG14704-RF 415..1076 678..17 3310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 310..679 1850 100 Plus
3R 32079331 3R 11453007..11453299 17..309 1465 100 Plus
3R 32079331 3R 11457585..11457624 678..717 200 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:11:20 has no hits.

BS16321.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:39 Download gff for BS16321.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 1..699 17..715 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:21 Download gff for BS16321.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 12..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:31 Download gff for BS16321.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 12..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:31 Download gff for BS16321.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 12..309 99 <- Plus
3R 11453452..11453820 310..678 100 <- Plus
3R 11457586..11457629 679..723 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:21 Download gff for BS16321.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 12..309 99 <- Plus
arm_3R 7279174..7279542 310..678 100 <- Plus
arm_3R 7283308..7283351 679..723 95   Plus

BS16321.5prime Sequence

729 bp (729 high quality bases) assembled on 2007-05-15

> BS16321.5prime
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCTAGAAGCTTTCTAGACC

BS16321.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 1..699 17..715 3495 100 Plus
CG14704-PB 648 PGRP-LB-RB 1..648 68..715 3240 100 Plus
CG14704-PA 648 PGRP-LB-RA 1..648 68..715 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 397..1097 15..715 3505 100 Plus
PGRP-LB-RD 926 CG14704-RD 106..768 53..715 3315 100 Plus
PGRP-LB-RF 1234 CG14704-RF 415..1076 54..715 3310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 422..53 1850 100 Minus
3R 32079331 3R 11453007..11453299 715..423 1465 100 Minus
3R 32079331 3R 11457585..11457624 54..15 200 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:19:56 has no hits.

BS16321.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:41 Download gff for BS16321.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:52:09 Download gff for BS16321.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:26 Download gff for BS16321.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:26 Download gff for BS16321.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 423..720 99 <- Minus
3R 11453452..11453820 54..422 100 <- Minus
3R 11457586..11457629 9..53 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:52:09 Download gff for BS16321.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 423..720 99 <- Minus
arm_3R 7279174..7279542 54..422 100 <- Minus
arm_3R 7283308..7283351 9..53 95   Minus

BS16321.complete Sequence

731 bp assembled on 2007-05-07

GenBank Submission: FJ638118

> BS16321.complete
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCTAGAAGCTTTCTAGACCAT

BS16321.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 699 CG14704-PC 1..699 17..715 3495 100 Plus
PGRP-LB-RD 768 CG14704-PD 106..768 53..715 3315 100 Plus
PGRP-LB-RF 648 CG14704-PF 1..648 68..715 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 397..1097 15..715 3505 100 Plus
PGRP-LB-RD 926 CG14704-RD 106..768 53..715 3315 100 Plus
PGRP-LB-RF 1234 CG14704-RF 415..1076 54..715 3310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 422..53 1850 100 Minus
3R 32079331 3R 11453007..11453299 715..423 1465 100 Minus
3R 32079331 3R 11457585..11457624 54..15 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:37:34 has no hits.

BS16321.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:49 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:14 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:48 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 399..1097 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:49 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:51 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 399..1097 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:51 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11453007..11453299 423..715 100 <- Minus
3R 11453452..11453820 54..422 100 <- Minus
3R 11457586..11457622 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:48 Download gff for BS16321.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278729..7279021 423..715 100 <- Minus
arm_3R 7279174..7279542 54..422 100 <- Minus
arm_3R 7283308..7283344 17..53 100   Minus

BS16321.pep Sequence

Translation from 16 to 714

> BS16321.pep
MTALGLVLLSMMGYSQHMQQANLGDGVATARLLSRSDWGARLPKSVEHFQ
GPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIG
GDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNL
IAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTHINDTEG
VSSTTAPVVPHVHPQAAAPQKPHQSPPAAPKV*

BS16321.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-PC 232 CG14704-PC 1..232 1..232 1260 100 Plus
PGRP-LB-PD 255 CG14704-PD 31..255 8..232 1208 98.2 Plus
PGRP-LB-PF 215 CG14704-PF 1..215 18..232 1176 100 Plus
PGRP-LB-PE 215 CG14704-PE 1..215 18..232 1176 100 Plus
PGRP-LB-PA 215 CG14704-PA 1..215 18..232 1176 100 Plus