Clone Sequence Records
BS16324.3prime Sequence
777 bp (777 high quality bases) assembled on 2007-05-15
> BS16324.3prime
ATGGTCTAGAAAGCTTTTAATGGCTAACAGTTTGCTTATTCAGATAAGCC
ATTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCA
GCCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCT
CGGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAG
GCGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCAT
CTTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCT
GAGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGA
GAGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCT
CATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAA
GGTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCC
ACACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTT
AAATGGTCTATCTGAATGTGGGCTGTGAAAAGAGCCTTCGGTCCAGGAGG
CGTCAAAGCCATCATTGGACTCGGGCGTATCGGCTTCTATATCTTCCGGA
TATCGGTTTATTATCTCCGCCTCCTGGGCGGGTTGCGGCGGCGGTGGCGG
CGGTGTTGTGTCCGACTCGCAGCGACGCCGTTTCCGAAAAATACCTCGAA
AATTCTCAAACATGTCGACTGATAACT
BS16324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 1..747 | 763..17 | 3735 | 100 | Minus |
CG7945-PA | 789 | CG7945-RA | 247..789 | 559..17 | 2715 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 421..1167 | 763..17 | 3735 | 100 | Minus |
CG7945-RA | 1451 | CG7945-RA | 801..1343 | 559..17 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 17..395 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 15523512..15523717 | 558..763 | 1030 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522504 | 394..538 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:53 has no hits.
BS16324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:36 Download gff for
BS16324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:21 Download gff for
BS16324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 408..1169 | 11..777 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:06 Download gff for
BS16324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 408..1169 | 11..777 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:06 Download gff for
BS16324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15523512..15523730 | 558..777 | 97 | | Plus |
3L | 15521812..15522195 | 11..393 | 98 | <- | Plus |
3L | 15522360..15522502 | 394..536 | 100 | <- | Plus |
3L | 15522560..15522580 | 537..557 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:21 Download gff for
BS16324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514912..15515295 | 11..393 | 98 | <- | Plus |
arm_3L | 15515460..15515602 | 394..536 | 100 | <- | Plus |
arm_3L | 15515660..15515680 | 537..557 | 100 | <- | Plus |
arm_3L | 15516612..15516830 | 558..777 | 97 | | Plus |
BS16324.5prime Sequence
777 bp (777 high quality bases) assembled on 2007-05-15
> BS16324.5prime
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCG
ACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAG
AACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAAC
TGTTAGCCATTAAAAGCTTTCTAGACC
BS16324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG7945-PA | 789 | CG7945-RA | 247..789 | 221..763 | 2715 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..429 | 335..763 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 421..1167 | 17..763 | 3735 | 100 | Plus |
CG7945-RA | 1451 | CG7945-RA | 801..1343 | 221..763 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 763..385 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15523512..15523717 | 222..17 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 386..242 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:17 has no hits.
BS16324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:32 Download gff for
BS16324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:13 Download gff for
BS16324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 409..1169 | 5..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:12 Download gff for
BS16324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 409..1169 | 5..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:12 Download gff for
BS16324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521812..15522195 | 387..769 | 98 | <- | Minus |
3L | 15522360..15522502 | 244..386 | 100 | <- | Minus |
3L | 15522560..15522580 | 223..243 | 100 | <- | Minus |
3L | 15523512..15523723 | 11..222 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:13 Download gff for
BS16324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514912..15515295 | 387..769 | 98 | <- | Minus |
arm_3L | 15515460..15515602 | 244..386 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 223..243 | 100 | <- | Minus |
arm_3L | 15516612..15516823 | 11..222 | 98 | <- | Minus |
BS16324.complete Sequence
779 bp assembled on 2007-05-07
GenBank Submission: FJ638119
> BS16324.complete
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCG
ACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAG
AACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAAC
TGTTAGCCATTAAAAGCTTTCTAGACCAT
BS16324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 747 | CG7945-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG7945-RA | 789 | CG7945-PA | 247..789 | 221..763 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 421..1167 | 17..763 | 3735 | 100 | Plus |
CG7945-RA | 1451 | CG7945-RA | 801..1343 | 221..763 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 763..385 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15523512..15523717 | 222..17 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 386..242 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:29 has no hits.
BS16324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:50 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:16 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 371..1131 | 5..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:28 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 427..1165 | 23..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:51 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 371..1131 | 5..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:31 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 427..1165 | 23..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:31 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15523512..15523711 | 23..222 | 100 | | Minus |
3L | 15521821..15522195 | 387..761 | 100 | <- | Minus |
3L | 15522360..15522502 | 244..386 | 100 | <- | Minus |
3L | 15522560..15522580 | 223..243 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:28 Download gff for
BS16324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15515460..15515602 | 244..386 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 223..243 | 100 | <- | Minus |
arm_3L | 15516612..15516811 | 23..222 | 100 | | Minus |
arm_3L | 15514921..15515295 | 387..761 | 100 | <- | Minus |
BS16324.pep Sequence
Translation from 16 to 762
> BS16324.pep
MFENFRGIFRKRRRCESDTTPPPPPPQPAQEAEIINRYPEDIEADTPESN
DGFDASWTEGSFHSPHSDRPFNASERFVTILDSLDARVEKLRKDALNLQE
KKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTV
RDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHM
DTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*
BS16324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 82..262 | 68..248 | 910 | 100 | Plus |