Clone BS16329 Report

Search the DGRC for BS16329

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG2076-RA
Protein status:BS16329.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16329.3prime Sequence

916 bp (833 high quality bases) assembled on 2007-05-15

> BS16329.3prime
ATGGTCTAGAAAGCTTTCACTTCCTGCGCTGACCACCACTCAGAATGGTA
ACGATGCGGATGAATATGTTCAGCACGTCCATGTAGATCGACATTGAGGC
GTTGATTGGATCGTAGGGAGTGTAGCTGTACTGGGGATAGACCTCAGCGC
GACGGACCATGCGCTGAGTGTCATAGAGCAGGAAGCCACTGAAGAGGACG
AGGCCGCCATATAGGGACATGGAGGCCAGACCTGCGCCCAGCGCCGTGGT
GGGCGGCAGCCACATGGATGCCAGCGAGGAGGCGAACACCACGCCCAAGC
CAATGGCCAGTGGGCCGCCCATGTAGAGGAACTTATCGCTGGGTGCACAC
GCGGCGATCGTGGACAAGCCACCAACAATGCCGCCCGTGTAGAGAGCGGC
GCGCGTCAAAATCGGTCCGCCCATGAAGCAAATGGGTGCGATCACGGCGC
CCAGAATGGCGCAGTGCACCGCCCAGGCCAGATGCTTGGCTCCCAGACCC
GGCTGGTACTCAATCGAGCGGGCAACTGCTCCACTACCAATGACCAGCGC
CAGCGAAGCAATGGTCGCCAAGATGCCGCCACGCGAGGCCAGCTCCAGGA
GACGGTGCGAACGGAAGGTGGCTGCTGCTGCGGCCGCGGTGAGAACGCAA
GAGCCACCGAAAAAGGCATAGGTGCTCTGGATACGATCGCGCACAAACTG
GGGCCACATGATGGCATTATCCGCGATGCTGGTTTGTTTTCCCAATCCCA
CGCCGTAGTAGCACAGGGCGCCCAATCCCACGGCGGCTGCTCCGGCGGCA
GCGCCCTTGCCCATGGAGTATGCATTGGCACTTGGCGGACCCATCAGTTT
CTCTTTCAGCGAGGGAGCACGCATCTCTTCGACCGGCTCACGGGTGCGAA
CCCCCTTGCGGGCGTA

BS16329.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PA 1026 CG2076-RA 127..1026 916..17 4400 99.5 Minus
CG1287-PA 1098 CG1287-RA 790..863 322..249 195 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 496..1395 916..17 4440 99.6 Minus
CG2076-RA 1319 CG2076-RA 324..1223 916..17 4440 99.6 Minus
CG1287-RA 1426 CG1287-RA 740..1193 505..52 605 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11091290..11091629 569..230 1700 100 Minus
X 23542271 X 11091051..11091193 710..568 715 100 Minus
X 23542271 X 11091720..11091857 236..99 690 100 Minus
X 23542271 X 11090865..11090977 823..711 565 100 Minus
3R 32079331 3R 7501184..7501637 52..505 545 74.7 Plus
X 23542271 X 11090705..11090798 916..823 410 95.7 Minus
X 23542271 X 11091921..11092002 98..17 410 100 Minus
Blast to na_te.dros performed 2015-02-11 03:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3163..3242 214..295 135 64.6 Plus

BS16329.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:46 Download gff for BS16329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-PA 128..1026 17..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:45 Download gff for BS16329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 325..1225 13..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:40 Download gff for BS16329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 325..1225 13..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:40 Download gff for BS16329.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11091291..11091627 232..568 100 -> Minus
X 11091725..11091857 99..231 100 -> Minus
X 11091921..11092004 13..98 97   Minus
X 11090706..11090798 823..915 95 -> Minus
X 11090866..11090977 711..822 100 -> Minus
X 11091051..11091192 569..710 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:45 Download gff for BS16329.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10985954..10986037 13..98 97   Minus
arm_X 10984739..10984831 823..915 95 -> Minus
arm_X 10984899..10985010 711..822 100 -> Minus
arm_X 10985084..10985225 569..710 100 -> Minus
arm_X 10985324..10985660 232..568 100 -> Minus
arm_X 10985758..10985890 99..231 100 -> Minus

BS16329.5prime Sequence

869 bp (789 high quality bases) assembled on 2007-05-15

> BS16329.5prime
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAAGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCA

BS16329.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PA 1026 CG2076-RA 1..853 17..869 4240 99.8 Plus
CG1287-PA 1098 CG1287-RA 790..863 737..810 195 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 370..1222 17..869 4250 99.9 Plus
CG2076-RA 1319 CG2076-RA 198..1050 17..869 4250 99.9 Plus
CG1287-RA 1426 CG1287-RA 740..1029 554..843 520 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11091290..11091626 490..826 1685 100 Plus
X 23542271 X 11090579..11090798 17..236 1100 100 Plus
X 23542271 X 11091051..11091193 349..491 715 100 Plus
X 23542271 X 11090865..11090977 236..348 565 100 Plus
3R 32079331 3R 7501348..7501637 843..554 520 78.6 Minus
X 23542271 X 11091720..11091766 823..869 220 97.9 Plus
Blast to na_te.dros performed on 2015-02-13 06:34:59 has no hits.

BS16329.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:42 Download gff for BS16329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:22 Download gff for BS16329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 191..1049 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:54 Download gff for BS16329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 191..1049 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:54 Download gff for BS16329.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11090572..11090798 9..236 98 -> Plus
X 11090866..11090977 237..348 100 -> Plus
X 11091051..11091192 349..490 100 -> Plus
X 11091291..11091627 491..827 99 -> Plus
X 11091725..11091765 828..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:22 Download gff for BS16329.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10984605..10984831 9..236 98 -> Plus
arm_X 10984899..10985010 237..348 100 -> Plus
arm_X 10985084..10985225 349..490 100 -> Plus
arm_X 10985324..10985660 491..827 99 -> Plus
arm_X 10985758..10985798 828..868 100   Plus

BS16329.complete Sequence

1058 bp assembled on 2007-05-07

GenBank Submission: FJ638120

> BS16329.complete
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAGGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCAGTGGCTTCCTGCTCTATGACACTCAGCGCAT
GGTCCGTCGCGCTGAGGTCTATCCCCAGTACAGCTACACTCCCTACGATC
CAATCAACGCCTCAATGTCGATCTACATGGACGTGCTGAACATATTCATC
CGCATCGTTACCATTCTGAGTGGTGGTCAGCGCAGGAAGTGAAAGCTTTC
TAGACCAT

BS16329.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1026 CG2076-PB 1..1026 17..1042 5130 100 Plus
CG2076-RA 1026 CG2076-PA 1..1026 17..1042 5130 100 Plus
CG1287-RA 1098 CG1287-PA 607..1060 554..1007 545 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 370..1395 17..1042 5130 100 Plus
CG2076-RA 1319 CG2076-RA 198..1223 17..1042 5130 100 Plus
CG1287-RA 1426 CG1287-RA 740..1193 554..1007 545 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11091290..11091629 490..829 1700 100 Plus
X 23542271 X 11090579..11090798 17..236 1100 100 Plus
X 23542271 X 11091051..11091193 349..491 715 100 Plus
X 23542271 X 11091720..11091857 823..960 690 100 Plus
X 23542271 X 11090865..11090977 236..348 565 100 Plus
3R 32079331 3R 7501184..7501637 1007..554 545 74.7 Minus
X 23542271 X 11091921..11092002 961..1042 410 100 Plus
Blast to na_te.dros performed 2014-11-28 01:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3163..3242 845..764 135 64.6 Minus

BS16329.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:52 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:17 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 192..1226 9..1046 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:35 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 203..1222 22..1041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:52 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 192..1226 9..1046 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:55 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 203..1222 22..1041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:55 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
X 11090584..11090798 22..236 100 -> Plus
X 11090866..11090977 237..348 100 -> Plus
X 11091051..11091192 349..490 100 -> Plus
X 11091291..11091627 491..827 100 -> Plus
X 11091725..11091857 828..960 100 -> Plus
X 11091921..11092001 961..1041 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:35 Download gff for BS16329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10984617..10984831 22..236 100 -> Plus
arm_X 10984899..10985010 237..348 100 -> Plus
arm_X 10985084..10985225 349..490 100 -> Plus
arm_X 10985324..10985660 491..827 100 -> Plus
arm_X 10985758..10985890 828..960 100 -> Plus
arm_X 10985954..10986034 961..1041 100   Plus

BS16329.pep Sequence

Translation from 16 to 1041

> BS16329.pep
MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT
REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL
GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE
LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV
IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG
VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE
VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRK*

BS16329.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PB 341 CG2076-PB 1..341 1..341 1718 100 Plus
CG2076-PA 341 CG2076-PA 1..341 1..341 1718 100 Plus
CG1287-PA 365 CG1287-PA 55..364 34..341 1089 67.1 Plus
BI-1-PB 237 CG7188-PB 26..229 116..335 155 26.2 Plus