Clone Sequence Records
BS16329.3prime Sequence
916 bp (833 high quality bases) assembled on 2007-05-15
> BS16329.3prime
ATGGTCTAGAAAGCTTTCACTTCCTGCGCTGACCACCACTCAGAATGGTA
ACGATGCGGATGAATATGTTCAGCACGTCCATGTAGATCGACATTGAGGC
GTTGATTGGATCGTAGGGAGTGTAGCTGTACTGGGGATAGACCTCAGCGC
GACGGACCATGCGCTGAGTGTCATAGAGCAGGAAGCCACTGAAGAGGACG
AGGCCGCCATATAGGGACATGGAGGCCAGACCTGCGCCCAGCGCCGTGGT
GGGCGGCAGCCACATGGATGCCAGCGAGGAGGCGAACACCACGCCCAAGC
CAATGGCCAGTGGGCCGCCCATGTAGAGGAACTTATCGCTGGGTGCACAC
GCGGCGATCGTGGACAAGCCACCAACAATGCCGCCCGTGTAGAGAGCGGC
GCGCGTCAAAATCGGTCCGCCCATGAAGCAAATGGGTGCGATCACGGCGC
CCAGAATGGCGCAGTGCACCGCCCAGGCCAGATGCTTGGCTCCCAGACCC
GGCTGGTACTCAATCGAGCGGGCAACTGCTCCACTACCAATGACCAGCGC
CAGCGAAGCAATGGTCGCCAAGATGCCGCCACGCGAGGCCAGCTCCAGGA
GACGGTGCGAACGGAAGGTGGCTGCTGCTGCGGCCGCGGTGAGAACGCAA
GAGCCACCGAAAAAGGCATAGGTGCTCTGGATACGATCGCGCACAAACTG
GGGCCACATGATGGCATTATCCGCGATGCTGGTTTGTTTTCCCAATCCCA
CGCCGTAGTAGCACAGGGCGCCCAATCCCACGGCGGCTGCTCCGGCGGCA
GCGCCCTTGCCCATGGAGTATGCATTGGCACTTGGCGGACCCATCAGTTT
CTCTTTCAGCGAGGGAGCACGCATCTCTTCGACCGGCTCACGGGTGCGAA
CCCCCTTGCGGGCGTA
BS16329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PA | 1026 | CG2076-RA | 127..1026 | 916..17 | 4400 | 99.5 | Minus |
CG1287-PA | 1098 | CG1287-RA | 790..863 | 322..249 | 195 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 496..1395 | 916..17 | 4440 | 99.6 | Minus |
CG2076-RA | 1319 | CG2076-RA | 324..1223 | 916..17 | 4440 | 99.6 | Minus |
CG1287-RA | 1426 | CG1287-RA | 740..1193 | 505..52 | 605 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11091290..11091629 | 569..230 | 1700 | 100 | Minus |
X | 23542271 | X | 11091051..11091193 | 710..568 | 715 | 100 | Minus |
X | 23542271 | X | 11091720..11091857 | 236..99 | 690 | 100 | Minus |
X | 23542271 | X | 11090865..11090977 | 823..711 | 565 | 100 | Minus |
3R | 32079331 | 3R | 7501184..7501637 | 52..505 | 545 | 74.7 | Plus |
X | 23542271 | X | 11090705..11090798 | 916..823 | 410 | 95.7 | Minus |
X | 23542271 | X | 11091921..11092002 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3163..3242 | 214..295 | 135 | 64.6 | Plus |
BS16329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:46 Download gff for
BS16329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-PA | 128..1026 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:45 Download gff for
BS16329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 325..1225 | 13..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:40 Download gff for
BS16329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 325..1225 | 13..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:40 Download gff for
BS16329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11091291..11091627 | 232..568 | 100 | -> | Minus |
X | 11091725..11091857 | 99..231 | 100 | -> | Minus |
X | 11091921..11092004 | 13..98 | 97 | | Minus |
X | 11090706..11090798 | 823..915 | 95 | -> | Minus |
X | 11090866..11090977 | 711..822 | 100 | -> | Minus |
X | 11091051..11091192 | 569..710 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:45 Download gff for
BS16329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10985954..10986037 | 13..98 | 97 | | Minus |
arm_X | 10984739..10984831 | 823..915 | 95 | -> | Minus |
arm_X | 10984899..10985010 | 711..822 | 100 | -> | Minus |
arm_X | 10985084..10985225 | 569..710 | 100 | -> | Minus |
arm_X | 10985324..10985660 | 232..568 | 100 | -> | Minus |
arm_X | 10985758..10985890 | 99..231 | 100 | -> | Minus |
BS16329.5prime Sequence
869 bp (789 high quality bases) assembled on 2007-05-15
> BS16329.5prime
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAAGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCA
BS16329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PA | 1026 | CG2076-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
CG1287-PA | 1098 | CG1287-RA | 790..863 | 737..810 | 195 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 370..1222 | 17..869 | 4250 | 99.9 | Plus |
CG2076-RA | 1319 | CG2076-RA | 198..1050 | 17..869 | 4250 | 99.9 | Plus |
CG1287-RA | 1426 | CG1287-RA | 740..1029 | 554..843 | 520 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11091290..11091626 | 490..826 | 1685 | 100 | Plus |
X | 23542271 | X | 11090579..11090798 | 17..236 | 1100 | 100 | Plus |
X | 23542271 | X | 11091051..11091193 | 349..491 | 715 | 100 | Plus |
X | 23542271 | X | 11090865..11090977 | 236..348 | 565 | 100 | Plus |
3R | 32079331 | 3R | 7501348..7501637 | 843..554 | 520 | 78.6 | Minus |
X | 23542271 | X | 11091720..11091766 | 823..869 | 220 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:34:59 has no hits.
BS16329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:42 Download gff for
BS16329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:18:22 Download gff for
BS16329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 191..1049 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:54 Download gff for
BS16329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 191..1049 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:54 Download gff for
BS16329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11090572..11090798 | 9..236 | 98 | -> | Plus |
X | 11090866..11090977 | 237..348 | 100 | -> | Plus |
X | 11091051..11091192 | 349..490 | 100 | -> | Plus |
X | 11091291..11091627 | 491..827 | 99 | -> | Plus |
X | 11091725..11091765 | 828..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:18:22 Download gff for
BS16329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10984605..10984831 | 9..236 | 98 | -> | Plus |
arm_X | 10984899..10985010 | 237..348 | 100 | -> | Plus |
arm_X | 10985084..10985225 | 349..490 | 100 | -> | Plus |
arm_X | 10985324..10985660 | 491..827 | 99 | -> | Plus |
arm_X | 10985758..10985798 | 828..868 | 100 | | Plus |
BS16329.complete Sequence
1058 bp assembled on 2007-05-07
GenBank Submission: FJ638120
> BS16329.complete
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAGGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCAGTGGCTTCCTGCTCTATGACACTCAGCGCAT
GGTCCGTCGCGCTGAGGTCTATCCCCAGTACAGCTACACTCCCTACGATC
CAATCAACGCCTCAATGTCGATCTACATGGACGTGCTGAACATATTCATC
CGCATCGTTACCATTCTGAGTGGTGGTCAGCGCAGGAAGTGAAAGCTTTC
TAGACCAT
BS16329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1026 | CG2076-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG2076-RA | 1026 | CG2076-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG1287-RA | 1098 | CG1287-PA | 607..1060 | 554..1007 | 545 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 370..1395 | 17..1042 | 5130 | 100 | Plus |
CG2076-RA | 1319 | CG2076-RA | 198..1223 | 17..1042 | 5130 | 100 | Plus |
CG1287-RA | 1426 | CG1287-RA | 740..1193 | 554..1007 | 545 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11091290..11091629 | 490..829 | 1700 | 100 | Plus |
X | 23542271 | X | 11090579..11090798 | 17..236 | 1100 | 100 | Plus |
X | 23542271 | X | 11091051..11091193 | 349..491 | 715 | 100 | Plus |
X | 23542271 | X | 11091720..11091857 | 823..960 | 690 | 100 | Plus |
X | 23542271 | X | 11090865..11090977 | 236..348 | 565 | 100 | Plus |
3R | 32079331 | 3R | 7501184..7501637 | 1007..554 | 545 | 74.7 | Minus |
X | 23542271 | X | 11091921..11092002 | 961..1042 | 410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3163..3242 | 845..764 | 135 | 64.6 | Minus |
BS16329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:52 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:17 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 192..1226 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:35 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 203..1222 | 22..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:52 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 192..1226 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:55 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 203..1222 | 22..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:55 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11090584..11090798 | 22..236 | 100 | -> | Plus |
X | 11090866..11090977 | 237..348 | 100 | -> | Plus |
X | 11091051..11091192 | 349..490 | 100 | -> | Plus |
X | 11091291..11091627 | 491..827 | 100 | -> | Plus |
X | 11091725..11091857 | 828..960 | 100 | -> | Plus |
X | 11091921..11092001 | 961..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:35 Download gff for
BS16329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10984617..10984831 | 22..236 | 100 | -> | Plus |
arm_X | 10984899..10985010 | 237..348 | 100 | -> | Plus |
arm_X | 10985084..10985225 | 349..490 | 100 | -> | Plus |
arm_X | 10985324..10985660 | 491..827 | 100 | -> | Plus |
arm_X | 10985758..10985890 | 828..960 | 100 | -> | Plus |
arm_X | 10985954..10986034 | 961..1041 | 100 | | Plus |
BS16329.pep Sequence
Translation from 16 to 1041
> BS16329.pep
MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT
REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL
GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE
LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV
IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG
VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE
VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRK*
BS16329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PB | 341 | CG2076-PB | 1..341 | 1..341 | 1718 | 100 | Plus |
CG2076-PA | 341 | CG2076-PA | 1..341 | 1..341 | 1718 | 100 | Plus |
CG1287-PA | 365 | CG1287-PA | 55..364 | 34..341 | 1089 | 67.1 | Plus |
BI-1-PB | 237 | CG7188-PB | 26..229 | 116..335 | 155 | 26.2 | Plus |