Clone Sequence Records
BS16331.3prime Sequence
435 bp (435 high quality bases) assembled on 2007-05-15
> BS16331.3prime
ATGGTCTAGAAAGCTTTTACGTTTTCCGGTCAGTTTCCCACCTTCTCATT
ATTGTATGAAAGGTCATGTCATAATTTTTGGATGCAGATTCCAGTTGATC
CGAGTTTAGAATAATATGTTGCTTAAAATAGTAAATCGCTGAAGCATCTT
TACTTTCCAACATTCCATTTAAATGGAATTGCAACTTTTCGTTTATAAAA
TGCAATTTACAATAGTCATTGTGAATGGAGACGGCATTGCAAAATAGATC
CGCTATATTGGGAAAAGTGAATTGACTTCCAAGACTGCTGACCTGCCTGA
TTTTTGGTATACTTGGTTTCCTTTCCATAAATTGCTTATTGTTCAACCTG
TATTTCGCAGGTACTATTCTTCCACTGAAAATTGCTCGGAATGTATTTCC
ACAACTTTCTACCGGTACCATGTCGACTGATAACT
BS16331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 405 | CG17490-RC | 1..405 | 421..17 | 2025 | 100 | Minus |
CG17490-PB | 2145 | CG17490-RB | 1662..2036 | 419..45 | 1875 | 100 | Minus |
CG17490-PD | 312 | CG17490-RD | 1..312 | 328..17 | 1560 | 100 | Minus |
CG17490-PA | 393 | CG17490-RA | 1..284 | 328..45 | 1420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..529 | 421..16 | 2030 | 100 | Minus |
CG17490-RD | 1342 | CG17490-RD | 51..461 | 426..16 | 2025 | 99.5 | Minus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 419..45 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 419..47 | 1865 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 21:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 166..207 | 108 | 76.2 | Plus |
BS16331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:48 Download gff for
BS16331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PC | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:00 Download gff for
BS16331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 13..433 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:27 Download gff for
BS16331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 13..433 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:27 Download gff for
BS16331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539950..22540324 | 47..422 | 99 | -> | Minus |
2L | 22547540..22547572 | 13..46 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:00 Download gff for
BS16331.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432682..22433056 | 47..422 | 99 | -> | Minus |
arm_2L | 22440272..22440304 | 13..46 | 97 | | Minus |
BS16331.5prime Sequence
435 bp (435 high quality bases) assembled on 2007-05-15
> BS16331.5prime
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGTAAAAGCTTTCTAGACC
BS16331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 405 | CG17490-RC | 1..405 | 17..421 | 2025 | 100 | Plus |
CG17490-PB | 2145 | CG17490-RB | 1662..2036 | 19..393 | 1875 | 100 | Plus |
CG17490-PD | 312 | CG17490-RD | 1..312 | 110..421 | 1560 | 100 | Plus |
CG17490-PA | 393 | CG17490-RA | 1..284 | 110..393 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..529 | 17..422 | 2030 | 100 | Plus |
CG17490-RD | 1342 | CG17490-RD | 51..461 | 12..422 | 2025 | 99.5 | Plus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 19..393 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 19..391 | 1865 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 272..231 | 108 | 76.2 | Minus |
BS16331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:49 Download gff for
BS16331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PC | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:19 Download gff for
BS16331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 5..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:09:16 Download gff for
BS16331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 5..425 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:09:16 Download gff for
BS16331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539950..22540324 | 16..391 | 99 | -> | Plus |
2L | 22547540..22547572 | 392..425 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:19 Download gff for
BS16331.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22440272..22440304 | 392..425 | 97 | | Plus |
arm_2L | 22432682..22433056 | 16..391 | 99 | -> | Plus |
BS16331.complete Sequence
437 bp assembled on 2007-05-07
GenBank Submission: FJ638121
> BS16331.complete
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGTAAAAGCTTTCTAGACCAT
BS16331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 405 | CG17490-PC | 1..405 | 17..421 | 2025 | 100 | Plus |
CG17490-RG | 2124 | CG17490-PG | 1641..2015 | 19..393 | 1875 | 100 | Plus |
CG17490-RE | 2124 | CG17490-PE | 1641..2015 | 19..393 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..529 | 17..422 | 2030 | 100 | Plus |
CG17490-RD | 1342 | CG17490-RD | 51..461 | 12..422 | 2025 | 99.5 | Plus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 19..393 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 19..391 | 1865 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 272..231 | 108 | 76.2 | Minus |
BS16331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:53 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:08 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 49..464 | 5..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:14 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 124..526 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:53 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 49..464 | 5..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:19 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 124..526 | 17..419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:19 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539951..22540324 | 17..391 | 99 | -> | Plus |
2L | 22547540..22547567 | 392..419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:14 Download gff for
BS16331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432683..22433056 | 17..391 | 99 | -> | Plus |
arm_2L | 22440272..22440299 | 392..419 | 100 | | Plus |
BS16331.pep Sequence
Translation from 16 to 420
> BS16331.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*
BS16331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 134 | CG17490-PC | 1..134 | 1..134 | 709 | 100 | Plus |
CG17490-PG | 707 | CG17490-PG | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PD | 103 | CG17490-PD | 1..103 | 32..134 | 546 | 100 | Plus |
CG17490-PF | 130 | CG17490-PF | 1..94 | 32..125 | 494 | 100 | Plus |