Clone BS16331 Report

Search the DGRC for BS16331

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG17490-RC
Protein status:BS16331.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16331.3prime Sequence

435 bp (435 high quality bases) assembled on 2007-05-15

> BS16331.3prime
ATGGTCTAGAAAGCTTTTACGTTTTCCGGTCAGTTTCCCACCTTCTCATT
ATTGTATGAAAGGTCATGTCATAATTTTTGGATGCAGATTCCAGTTGATC
CGAGTTTAGAATAATATGTTGCTTAAAATAGTAAATCGCTGAAGCATCTT
TACTTTCCAACATTCCATTTAAATGGAATTGCAACTTTTCGTTTATAAAA
TGCAATTTACAATAGTCATTGTGAATGGAGACGGCATTGCAAAATAGATC
CGCTATATTGGGAAAAGTGAATTGACTTCCAAGACTGCTGACCTGCCTGA
TTTTTGGTATACTTGGTTTCCTTTCCATAAATTGCTTATTGTTCAACCTG
TATTTCGCAGGTACTATTCTTCCACTGAAAATTGCTCGGAATGTATTTCC
ACAACTTTCTACCGGTACCATGTCGACTGATAACT

BS16331.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 405 CG17490-RC 1..405 421..17 2025 100 Minus
CG17490-PB 2145 CG17490-RB 1662..2036 419..45 1875 100 Minus
CG17490-PD 312 CG17490-RD 1..312 328..17 1560 100 Minus
CG17490-PA 393 CG17490-RA 1..284 328..45 1420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..529 421..16 2030 100 Minus
CG17490-RD 1342 CG17490-RD 51..461 426..16 2025 99.5 Minus
CG17490-RF 2953 CG17490-RF 1665..2039 419..45 1875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 419..47 1865 100 Minus
Blast to na_te.dros performed 2015-02-04 21:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 166..207 108 76.2 Plus

BS16331.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:48 Download gff for BS16331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-PC 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:00 Download gff for BS16331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 13..433 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:27 Download gff for BS16331.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 13..433 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:27 Download gff for BS16331.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22539950..22540324 47..422 99 -> Minus
2L 22547540..22547572 13..46 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:00 Download gff for BS16331.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22432682..22433056 47..422 99 -> Minus
arm_2L 22440272..22440304 13..46 97   Minus

BS16331.5prime Sequence

435 bp (435 high quality bases) assembled on 2007-05-15

> BS16331.5prime
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGTAAAAGCTTTCTAGACC

BS16331.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 405 CG17490-RC 1..405 17..421 2025 100 Plus
CG17490-PB 2145 CG17490-RB 1662..2036 19..393 1875 100 Plus
CG17490-PD 312 CG17490-RD 1..312 110..421 1560 100 Plus
CG17490-PA 393 CG17490-RA 1..284 110..393 1420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..529 17..422 2030 100 Plus
CG17490-RD 1342 CG17490-RD 51..461 12..422 2025 99.5 Plus
CG17490-RF 2953 CG17490-RF 1665..2039 19..393 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 19..391 1865 100 Plus
Blast to na_te.dros performed 2015-02-11 04:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 272..231 108 76.2 Minus

BS16331.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:49 Download gff for BS16331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-PC 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:19 Download gff for BS16331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 5..425 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:09:16 Download gff for BS16331.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 5..425 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:09:16 Download gff for BS16331.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22539950..22540324 16..391 99 -> Plus
2L 22547540..22547572 392..425 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:19 Download gff for BS16331.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22440272..22440304 392..425 97   Plus
arm_2L 22432682..22433056 16..391 99 -> Plus

BS16331.complete Sequence

437 bp assembled on 2007-05-07

GenBank Submission: FJ638121

> BS16331.complete
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGTAAAAGCTTTCTAGACCAT

BS16331.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 405 CG17490-PC 1..405 17..421 2025 100 Plus
CG17490-RG 2124 CG17490-PG 1641..2015 19..393 1875 100 Plus
CG17490-RE 2124 CG17490-PE 1641..2015 19..393 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..529 17..422 2030 100 Plus
CG17490-RD 1342 CG17490-RD 51..461 12..422 2025 99.5 Plus
CG17490-RF 2953 CG17490-RF 1665..2039 19..393 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 19..391 1865 100 Plus
Blast to na_te.dros performed 2014-11-27 07:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 272..231 108 76.2 Minus

BS16331.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:53 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:08 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 49..464 5..425 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:14 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 124..526 17..419 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:53 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 49..464 5..425 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:19 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 124..526 17..419 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:19 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22539951..22540324 17..391 99 -> Plus
2L 22547540..22547567 392..419 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:14 Download gff for BS16331.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22432683..22433056 17..391 99 -> Plus
arm_2L 22440272..22440299 392..419 100   Plus

BS16331.pep Sequence

Translation from 16 to 420

> BS16331.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*

BS16331.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 134 CG17490-PC 1..134 1..134 709 100 Plus
CG17490-PG 707 CG17490-PG 548..671 2..125 652 100 Plus
CG17490-PE 707 CG17490-PE 548..671 2..125 652 100 Plus
CG17490-PD 103 CG17490-PD 1..103 32..134 546 100 Plus
CG17490-PF 130 CG17490-PF 1..94 32..125 494 100 Plus