Clone Sequence Records
BS16332.3prime Sequence
944 bp (834 high quality bases) assembled on 2007-05-15
> BS16332.3prime
ATGGTCTAGAAAGCTTCTAATGTAATTGGAAACATTTAAACTTATCATAG
TTGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAG
GTCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATA
TTTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACA
CTGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTC
CAATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAA
CCTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCA
CTCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCT
GGGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGG
GTGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAG
GTTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAG
ACCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCG
AGCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATG
GACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTT
AGCTACAAGGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGT
GGCCAAACCCGCTGAGCTTCAGGTTAGGGGCTGAGACTTCGTCTCTATAA
AATTCTCGACGACCGACGCGTCCACGTTTACGATCTTTTTCTTTGTCATC
TCGGTCTTCTCGATCACTTACGCCTGCTCGATTTTTGTCACTGCCATTAC
TTTTCTCTTTAAGTTTTTCATATTCATTTTGGCCTTTGAGGATC
BS16332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 300..1212 | 929..17 | 4565 | 100 | Minus |
CG17540-PC | 1092 | CG17540-RC | 180..1092 | 929..17 | 4565 | 100 | Minus |
CG17540-PB | 1116 | CG17540-RB | 204..1116 | 929..17 | 4565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 313..1241 | 944..15 | 4625 | 99.9 | Minus |
Spf45-RC | 1257 | CG17540-RC | 216..1144 | 944..15 | 4625 | 99.9 | Minus |
Spf45-RA | 1397 | CG17540-RA | 356..1284 | 944..15 | 4625 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23067976 | 112..944 | 4115 | 99.9 | Plus |
2L | 23513712 | 2L | 23066987..23067085 | 15..113 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:34:41 has no hits.
BS16332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:56 Download gff for
BS16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 190..1116 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:42 Download gff for
BS16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 356..1290 | 7..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:16 Download gff for
BS16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 356..1290 | 7..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:16 Download gff for
BS16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066981..23067083 | 7..111 | 96 | <- | Plus |
2L | 23067145..23067976 | 112..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:42 Download gff for
BS16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959713..22959815 | 7..111 | 96 | <- | Plus |
arm_2L | 22959877..22960708 | 112..944 | 99 | | Plus |
BS16332.5prime Sequence
859 bp (820 high quality bases) assembled on 2007-05-15
> BS16332.5prime
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCNAGCAAGGTT
GTTCTTCTA
BS16332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PB | 1116 | CG17540-RB | 1..843 | 17..859 | 4196 | 99.8 | Plus |
CG17540-PA | 1212 | CG17540-RA | 161..939 | 81..859 | 3876 | 99.8 | Plus |
CG17540-PC | 1092 | CG17540-RC | 41..819 | 81..859 | 3876 | 99.8 | Plus |
CG17540-PA | 1212 | CG17540-RA | 54..117 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 124..966 | 17..859 | 4204 | 99.9 | Plus |
Spf45-RC | 1257 | CG17540-RC | 91..869 | 81..859 | 3884 | 99.9 | Plus |
Spf45-RA | 1397 | CG17540-RA | 231..1009 | 81..859 | 3884 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067323..23068101 | 859..81 | 3884 | 99.9 | Minus |
2L | 23513712 | 2L | 23068200..23068263 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:48 has no hits.
BS16332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:59 Download gff for
BS16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:44 Download gff for
BS16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..965 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:57 Download gff for
BS16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..965 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:57 Download gff for
BS16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067324..23068101 | 81..858 | 99 | <- | Minus |
2L | 23068200..23068263 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:44 Download gff for
BS16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22960056..22960833 | 81..858 | 99 | <- | Minus |
arm_2L | 22960932..22960995 | 17..80 | 100 | | Minus |
BS16332.complete Sequence
1148 bp assembled on 2007-05-07
GenBank Submission: FJ638122
> BS16332.complete
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTT
GTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGA
ACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAAGTGAACAGTG
TAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGCAGTTAAAATA
TTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTGTAGTGGACCT
TAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGGTTTTACAACT
ATGATAAGTTTAAATGTTTCCAATTACATTAGAAGCTTTCTAGACCAT
BS16332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1116 | CG17540-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Spf45-RC | 1092 | CG17540-PC | 41..1092 | 81..1132 | 5260 | 100 | Plus |
Spf45-RA | 1212 | CG17540-PA | 161..1212 | 81..1132 | 5260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 124..1241 | 17..1134 | 5590 | 100 | Plus |
Spf45-RC | 1257 | CG17540-RC | 91..1144 | 81..1134 | 5270 | 100 | Plus |
Spf45-RA | 1397 | CG17540-RA | 231..1284 | 81..1134 | 5270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23068101 | 1037..81 | 4785 | 100 | Minus |
2L | 23513712 | 2L | 23066987..23067085 | 1134..1036 | 495 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068263 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:35 has no hits.
BS16332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:54 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 1..1116 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:19 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 185..1308 | 17..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:17 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..1239 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:55 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 185..1308 | 17..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:54 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..1239 | 17..1132 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:54 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066989..23067083 | 1038..1132 | 100 | <- | Minus |
2L | 23067145..23068101 | 81..1037 | 100 | <- | Minus |
2L | 23068200..23068263 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:17 Download gff for
BS16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959721..22959815 | 1038..1132 | 100 | <- | Minus |
arm_2L | 22959877..22960833 | 81..1037 | 100 | <- | Minus |
arm_2L | 22960932..22960995 | 17..80 | 100 | | Minus |
BS16332.pep Sequence
Translation from 16 to 1131
> BS16332.pep
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLH*
BS16332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-PB | 371 | CG17540-PB | 1..371 | 1..371 | 1938 | 100 | Plus |
Spf45-PA | 403 | CG17540-PA | 38..403 | 6..371 | 1819 | 95.9 | Plus |
Spf45-PC | 363 | CG17540-PC | 14..363 | 22..371 | 1818 | 99.7 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 276..365 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 276..365 | 192 | 47.9 | Plus |