Clone BS16332 Report

Search the DGRC for BS16332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptSpf45-RB
Protein status:BS16332.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16332.3prime Sequence

944 bp (834 high quality bases) assembled on 2007-05-15

> BS16332.3prime
ATGGTCTAGAAAGCTTCTAATGTAATTGGAAACATTTAAACTTATCATAG
TTGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAG
GTCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATA
TTTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACA
CTGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTC
CAATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAA
CCTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCA
CTCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCT
GGGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGG
GTGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAG
GTTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAG
ACCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCG
AGCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATG
GACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTT
AGCTACAAGGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGT
GGCCAAACCCGCTGAGCTTCAGGTTAGGGGCTGAGACTTCGTCTCTATAA
AATTCTCGACGACCGACGCGTCCACGTTTACGATCTTTTTCTTTGTCATC
TCGGTCTTCTCGATCACTTACGCCTGCTCGATTTTTGTCACTGCCATTAC
TTTTCTCTTTAAGTTTTTCATATTCATTTTGGCCTTTGAGGATC

BS16332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 300..1212 929..17 4565 100 Minus
CG17540-PC 1092 CG17540-RC 180..1092 929..17 4565 100 Minus
CG17540-PB 1116 CG17540-RB 204..1116 929..17 4565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 313..1241 944..15 4625 99.9 Minus
Spf45-RC 1257 CG17540-RC 216..1144 944..15 4625 99.9 Minus
Spf45-RA 1397 CG17540-RA 356..1284 944..15 4625 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23067976 112..944 4115 99.9 Plus
2L 23513712 2L 23066987..23067085 15..113 495 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:34:41 has no hits.

BS16332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:32:56 Download gff for BS16332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 190..1116 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:42 Download gff for BS16332.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 356..1290 7..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:16 Download gff for BS16332.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 356..1290 7..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:16 Download gff for BS16332.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23066981..23067083 7..111 96 <- Plus
2L 23067145..23067976 112..944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:42 Download gff for BS16332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959713..22959815 7..111 96 <- Plus
arm_2L 22959877..22960708 112..944 99   Plus

BS16332.5prime Sequence

859 bp (820 high quality bases) assembled on 2007-05-15

> BS16332.5prime
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCNAGCAAGGTT
GTTCTTCTA

BS16332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PB 1116 CG17540-RB 1..843 17..859 4196 99.8 Plus
CG17540-PA 1212 CG17540-RA 161..939 81..859 3876 99.8 Plus
CG17540-PC 1092 CG17540-RC 41..819 81..859 3876 99.8 Plus
CG17540-PA 1212 CG17540-RA 54..117 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 124..966 17..859 4204 99.9 Plus
Spf45-RC 1257 CG17540-RC 91..869 81..859 3884 99.9 Plus
Spf45-RA 1397 CG17540-RA 231..1009 81..859 3884 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067323..23068101 859..81 3884 99.9 Minus
2L 23513712 2L 23068200..23068263 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:09:48 has no hits.

BS16332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:26:59 Download gff for BS16332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:44 Download gff for BS16332.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..965 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:57 Download gff for BS16332.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..965 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:57 Download gff for BS16332.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23067324..23068101 81..858 99 <- Minus
2L 23068200..23068263 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:44 Download gff for BS16332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22960056..22960833 81..858 99 <- Minus
arm_2L 22960932..22960995 17..80 100   Minus

BS16332.complete Sequence

1148 bp assembled on 2007-05-07

GenBank Submission: FJ638122

> BS16332.complete
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTT
GTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGA
ACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAAGTGAACAGTG
TAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGCAGTTAAAATA
TTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTGTAGTGGACCT
TAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGGTTTTACAACT
ATGATAAGTTTAAATGTTTCCAATTACATTAGAAGCTTTCTAGACCAT

BS16332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1116 CG17540-PB 1..1116 17..1132 5580 100 Plus
Spf45-RC 1092 CG17540-PC 41..1092 81..1132 5260 100 Plus
Spf45-RA 1212 CG17540-PA 161..1212 81..1132 5260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 124..1241 17..1134 5590 100 Plus
Spf45-RC 1257 CG17540-RC 91..1144 81..1134 5270 100 Plus
Spf45-RA 1397 CG17540-RA 231..1284 81..1134 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068101 1037..81 4785 100 Minus
2L 23513712 2L 23066987..23067085 1134..1036 495 100 Minus
2L 23513712 2L 23068200..23068263 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:35 has no hits.

BS16332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:54 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:19 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 185..1308 17..1142 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:17 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..1239 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:55 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 185..1308 17..1142 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:54 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..1239 17..1132 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:54 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23066989..23067083 1038..1132 100 <- Minus
2L 23067145..23068101 81..1037 100 <- Minus
2L 23068200..23068263 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:17 Download gff for BS16332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959721..22959815 1038..1132 100 <- Minus
arm_2L 22959877..22960833 81..1037 100 <- Minus
arm_2L 22960932..22960995 17..80 100   Minus

BS16332.pep Sequence

Translation from 16 to 1131

> BS16332.pep
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLH*

BS16332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PB 371 CG17540-PB 1..371 1..371 1938 100 Plus
Spf45-PA 403 CG17540-PA 38..403 6..371 1819 95.9 Plus
Spf45-PC 363 CG17540-PC 14..363 22..371 1818 99.7 Plus
pUf68-PJ 545 CG12085-PJ 444..538 276..365 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 276..365 192 47.9 Plus