Clone Sequence Records
BS16333.3prime Sequence
917 bp (782 high quality bases) assembled on 2007-05-15
> BS16333.3prime
ATGGTCTAGAAAGCTTTCAGGTATCAACCAGGATGTGCGTGAACAAACTG
TGCATTCGCCGCTCCATTTCCGTGTACACCAGTGAGTTGAGTCCATCCGC
GTGCTGGCGCAGAGTCGCCGATCTCAGCAGTGCCACGCGATTGGCATTCG
GCTGCTCCTGTTTGTGCTTCAGCATGGTGTACTTACTGAACTCCATTGCG
AATCGGCAAATGTCGATATTCAGGGCCTGCAGGCGCTCGTAGAGGTCATC
GTCCTCTCCGCCCCAGCCGTAATACAGATTGGACATGCCGTTGATCTGCT
GGTACTGGGCGGTGTTGATGGCCACCACGCCGCCGAAAAGACCGCGGTAA
GGCAGTCGGAATCGCCAGTGATCCAGGGCAGAGCTCATGTGCCGTGGACG
TTCGGAGCAGGCATATATTTGACCCGAATTCAGTGGCAGGAGGTCCACGT
CATGAAGGATGAGGCAGGGAAATCCATACTCCGCAGCCACCTGGGCGCCA
ATGTTGAAGAGCATCGCCCTGTTAAACGGCTTATGATCGAACTGTTCGAC
CAGGAAAATCCGATAGTGGATCAGCTGCTGCGGCAGGTAATTGTGCATGT
ACGTGAGGAAGGCGTGCAGCTGCTCCTCCCGCTGCCTGTACGGCACAATG
ATGGCGGTGCTGTAGCGAGCCTGACATCCTTCCGGACGGAACTCGCCGCC
AGGACGGATCTCCGCGCCCCTCTGCACCGCGTCATGGTAATGGGCCAGGT
GGTAGACGAACCGGTTTTCGGCAATGATCTCCGAGTAGGTGCATTCGAAA
ACTTCCTGCTGGGAGACATTTCTGGTCACCTGCGGCACCAGAGCCCCCTC
GATCTTTGATTCCTCGATGTAGTCGTAGTGCGATGCGAAACGGAAGGCCA
GACACAGGTACACAATG
BS16333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14517-PA | 972 | beta4GalNAcTB-RA | 76..972 | 913..17 | 4435 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 161..1061 | 917..17 | 4460 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29032948..29033848 | 17..917 | 4460 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:32:19 has no hits.
BS16333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:07 Download gff for
BS16333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14517-PA | 72..972 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:50 Download gff for
BS16333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 161..1065 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:19 Download gff for
BS16333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 161..1065 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:19 Download gff for
BS16333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29032944..29033848 | 13..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:50 Download gff for
BS16333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858666..24859570 | 13..917 | 99 | | Plus |
BS16333.5prime Sequence
905 bp (847 high quality bases) assembled on 2007-05-15
> BS16333.5prime
GAAGTTATCAGTCGACATGTTCGTGCGGCTCTGGGTCCGCAGCTTCCATA
AATATGATCTTCTCATCGCCATCGGACTGATCACTCTCATCGTGTACCTG
TGTCTGCCCTTCCGGTTCGCATCGCACTACGACTACATCGAGGAATCAAA
GATCGAGGGGGCTCTGGTGCCGCAGGTGACCAGAAATGTCTCCCAGCAGG
AAGTTTTCGAATGCACCTACTCGGAGATCATTGCCGAAAACCGGTTCGTC
TACCACCTGGCCCATTACCATGACGCGGTGCAGAGGGGCGCGGAGATCCG
TCCTGGCGGCGAGTTCCGTCCGGAAGGATGTCAGGCTCGCTACAGCACCG
CCATCATTGTGCCGTACAGGCAGCGGGAGGAGCAGCTGCACGCCTTCCTC
ACGTACATGCACAATTACCTGCCGCAGCAGCTGATCCACTATCGGATTTT
CCTGGTCGAACAGTTCGATCATAAGCCGTTTAACAGGGCGATGCTCTTCA
ACATTGGCGCCCAGGTGGCTGCGGAGTATGGATTTCCCTGCCTCATCCTT
CATGACGTGGACCTCCTGCCACTGAATTCGGGTCAAATATATGCCTGCTC
CGAACGTCCACGGCACATGAGCTCTGCCCTGGATCACTGGCGATTCCGAC
TGCCTTACCGCGGTCTTTTCGGCGGCGTGGTGGCCATCAACACCGCCCAG
TACCAGCAGATCAACGGCATGTCCAATCTGTATTACGGCTGGGGCGGAGA
GGACGATGACCTCTACGAGCGCCTGCAGGCCCTGAATATCGACATTTGCC
GATTCGCAATGGAGTTCAGTAAGTACACCATGCTGAAGCACAAACAGGAG
CAGCCGAATGCCAATCGCGTGGCACTGCTGAGATCGGCGACTCTGCGCCA
GCACG
BS16333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14517-PA | 972 | beta4GalNAcTB-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 90..978 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29033031..29033919 | 905..17 | 4445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:41:00 has no hits.
BS16333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:07 Download gff for
BS16333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14517-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:23:47 Download gff for
BS16333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..978 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:42 Download gff for
BS16333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..978 | 17..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:42 Download gff for
BS16333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29033031..29033919 | 17..905 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:23:47 Download gff for
BS16333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858753..24859641 | 17..905 | 100 | | Minus |
BS16333.complete Sequence
1004 bp assembled on 2007-05-07
GenBank Submission: FJ638123
> BS16333.complete
GAAGTTATCAGTCGACATGTTCGTGCGGCTCTGGGTCCGCAGCTTCCATA
AATATGATCTTCTCATCGCCATCGGACTGATCACTCTCATCGTGTACCTG
TGTCTGCCCTTCCGGTTCGCATCGCACTACGACTACATCGAGGAATCAAA
GATCGAGGGGGCTCTGGTGCCGCAGGTGACCAGAAATGTCTCCCAGCAGG
AAGTTTTCGAATGCACCTACTCGGAGATCATTGCCGAAAACCGGTTCGTC
TACCACCTGGCCCATTACCATGACGCGGTGCAGAGGGGCGCGGAGATCCG
TCCTGGCGGCGAGTTCCGTCCGGAAGGATGTCAGGCTCGCTACAGCACCG
CCATCATTGTGCCGTACAGGCAGCGGGAGGAGCAGCTGCACGCCTTCCTC
ACGTACATGCACAATTACCTGCCGCAGCAGCTGATCCACTATCGGATTTT
CCTGGTCGAACAGTTCGATCATAAGCCGTTTAACAGGGCGATGCTCTTCA
ACATTGGCGCCCAGGTGGCTGCGGAGTATGGATTTCCCTGCCTCATCCTT
CATGACGTGGACCTCCTGCCACTGAATTCGGGTCAAATATATGCCTGCTC
CGAACGTCCACGGCACATGAGCTCTGCCCTGGATCACTGGCGATTCCGAC
TGCCTTACCGCGGTCTTTTCGGCGGCGTGGTGGCCATCAACACCGCCCAG
TACCAGCAGATCAACGGCATGTCCAATCTGTATTACGGCTGGGGCGGAGA
GGACGATGACCTCTACGAGCGCCTGCAGGCCCTGAATATCGACATTTGCC
GATTCGCAATGGAGTTCAGTAAGTACACCATGCTGAAGCACAAACAGGAG
CAGCCGAATGCCAATCGCGTGGCACTGCTGAGATCGGCGACTCTGCGCCA
GCACGCGGATGGACTCAACTCACTGGTGTACACGGAAATGGAGCGGCGAA
TGCACAGTTTGTTCACGCACATCCTGGTTGATACCTGAAAGCTTTCTAGA
CCAT
BS16333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 972 | CG14517-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 90..1061 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29032948..29033919 | 988..17 | 4860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:09:41 has no hits.
BS16333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:35 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:42 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..1065 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:20 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 95..1060 | 22..987 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:35 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..1061 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:12 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 95..1060 | 22..987 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:12 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29032949..29033914 | 22..987 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:20 Download gff for
BS16333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858671..24859636 | 22..987 | 100 | | Minus |
BS16333.pep Sequence
Translation from 16 to 987
> BS16333.pep
MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL
VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF
RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF
DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH
MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY
ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL
NSLVYTEMERRMHSLFTHILVDT*
BS16333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-PA | 323 | CG14517-PA | 1..323 | 1..323 | 1719 | 100 | Plus |
| beta4GalNAcTA-PA | 403 | CG8536-PA | 163..395 | 91..322 | 551 | 45.5 | Plus |
| beta4GalT7-PA | 322 | CG11780-PA | 75..227 | 109..262 | 273 | 35.9 | Plus |
