Clone BS16336 Report

Search the DGRC for BS16336

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptea-RA
Protein status:BS16336.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16336.3prime Sequence

816 bp (742 high quality bases) assembled on 2007-05-15

> BS16336.3prime
ATGGTCTAGAAAGCTTTCAGGACTCAATAGTGTTTTGTATCCAATCAACG
TACTTGCCCACCAGCGTGTAAACTCCTGGCCATCCGGCCAGACCGCACGG
AGTCGGTCCAAATGACACGACGCCGGCCAGGAAGTAGTAGGTGTTCACCT
TGTTGGTGTCCAAGCCGATGAGCGGTCCCCCGGAGTCACCGCGACAGGAG
TCGACGCCTTCCTTGCCGCCGGCACACATCTGTGTGTCCTCGAGGAGAAT
GTCCTGGCTGCTGTAGACGTTCTGGCACTCATCCATCCGGAATCCCTCCA
CGGCTGCCTTCAGCTTGAGGTTGCTGGCCGACAGCTGCTCCGTTTTGCCC
CAGCCGGCCACGTCCATGGTGATGCCGTCGAAGGTGGCCGACCGCAGATT
GACGTCCAGAGGCAGGCAAATGGGTCGCACAAAGTCGGTGTACTCCACCT
GCTGGGCCAGACGCAGCAGGGCTATGTCGTTGACCTGGTTCTTGGAGGCC
GGTATATAGTCGGGATGGGGTATAGTACGCTCCACGGGCACGTCCAGATG
CGGTGGCGCGCAGTCCTTCATGCCGCGCACATCTACTTCGCAATCGGGAT
TAGTGTTGGTGTCCCATTCGCCCAAACGAACACCGGACAACCGCCAGTCG
GTGGGCAGTGCCTTTCCGTTGACACAATGCGAGGCTGTGATCACATATCT
TGTGCTGATCAAGGATCCGCCGCAATGGTGACCCTTTTTGCCCTGGCTTT
TGGTGTATTCAATTAGAGCCATCCAGGGGAACTCGTCGATCTTGGTCTTC
ATTCCGCCATAGATGC

BS16336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4920-PA 1179 ea-RA 380..1179 816..17 4000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RB 1527 CG4920-RB 681..1480 816..17 4000 100 Minus
ea-RA 1430 CG4920-RA 584..1383 816..17 4000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329631..15330361 747..17 3655 100 Minus
3R 32079331 3R 15329498..15329567 816..747 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:46:01 has no hits.

BS16336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:56 Download gff for BS16336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4920-PA 380..1179 17..816 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:47 Download gff for BS16336.3prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 584..1383 17..816 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:44 Download gff for BS16336.3prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 584..1383 17..816 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:44 Download gff for BS16336.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15329498..15329566 748..816 100 -> Minus
3R 15329631..15330361 17..747 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:47 Download gff for BS16336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11155220..11155288 748..816 100 -> Minus
arm_3R 11155353..11156083 17..747 100   Minus

BS16336.5prime Sequence

851 bp (759 high quality bases) assembled on 2007-05-15

> BS16336.5prime
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
G

BS16336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4920-PA 1179 ea-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1430 CG4920-RA 205..1039 17..851 4175 100 Plus
ea-RB 1527 CG4920-RB 363..1136 78..851 3870 100 Plus
ea-RB 1527 CG4920-RB 205..265 17..77 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329180..15329567 78..465 1940 100 Plus
3R 32079331 3R 15329631..15330017 465..851 1935 100 Plus
3R 32079331 3R 15328933..15328993 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:57:36 has no hits.

BS16336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:51 Download gff for BS16336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4920-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:53 Download gff for BS16336.5prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 197..1039 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:41 Download gff for BS16336.5prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 197..1039 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:41 Download gff for BS16336.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15328925..15328993 9..77 94 -> Plus
3R 15329180..15329566 78..464 100 -> Plus
3R 15329631..15330017 465..851 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:53 Download gff for BS16336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11154647..11154715 9..77 94 -> Plus
arm_3R 11154902..11155288 78..464 100 -> Plus
arm_3R 11155353..11155739 465..851 100   Plus

BS16336.complete Sequence

1211 bp assembled on 2007-05-07

GenBank Submission: FJ638124

> BS16336.complete
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
GTGGCCGGCTGGGGCAAAACGGAGCAGCTGTCGGCCAGCAACCTCAAGCT
GAAGGCAGCCGTGGAGGGATTCCGGATGGATGAGTGCCAGAACGTCTACA
GCAGCCAGGACATTCTCCTCGAGGACACACAGATGTGTGCCGGCGGCAAG
GAAGGCGTCGACTCCTGTCGCGGTGACTCCGGGGGACCGCTCATCGGCTT
GGACACCAACAAGGTGAACACCTACTACTTCCTGGCCGGCGTCGTGTCAT
TTGGACCGACTCCGTGCGGTCTGGCCGGATGGCCAGGAGTTTACACGCTG
GTGGGCAAGTACGTTGATTGGATACAAAACACTATTGAGTCCTGAAAGCT
TTCTAGACCAT

BS16336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1179 CG4920-PA 1..1179 17..1195 5895 100 Plus
ea-RB 786 CG4920-PB 1..786 410..1195 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1430 CG4920-RA 205..1383 17..1195 5895 100 Plus
ea-RB 1527 CG4920-RB 363..1480 78..1195 5590 100 Plus
ea-RB 1527 CG4920-RB 205..265 17..77 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329631..15330361 465..1195 3655 100 Plus
3R 32079331 3R 15329180..15329567 78..465 1940 100 Plus
3R 32079331 3R 15328933..15328993 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:30:39 has no hits.

BS16336.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:42 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:03 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 196..1382 9..1195 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:50 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 205..1382 17..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:42 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 196..1382 9..1195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:44 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 205..1382 17..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:44 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15328933..15328993 17..77 100 -> Plus
3R 15329180..15329566 78..464 100 -> Plus
3R 15329631..15330360 465..1194 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:50 Download gff for BS16336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11154902..11155288 78..464 100 -> Plus
arm_3R 11154655..11154715 17..77 100 -> Plus
arm_3R 11155353..11156082 465..1194 100   Plus

BS16336.pep Sequence

Translation from 16 to 1194

> BS16336.pep
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIES*

BS16336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
ea-PA 392 CG4920-PA 1..392 1..392 2127 100 Plus
ea-PB 261 CG4920-PB 1..261 132..392 1416 100 Plus
MP1-PA 390 CG1102-PA 26..390 34..392 1000 51 Plus
MP1-PC 399 CG1102-PC 26..399 34..392 980 49.7 Plus
SPE-PA 400 CG16705-PA 9..399 9..391 843 43.5 Plus