Clone Sequence Records
BS16336.3prime Sequence
816 bp (742 high quality bases) assembled on 2007-05-15
> BS16336.3prime
ATGGTCTAGAAAGCTTTCAGGACTCAATAGTGTTTTGTATCCAATCAACG
TACTTGCCCACCAGCGTGTAAACTCCTGGCCATCCGGCCAGACCGCACGG
AGTCGGTCCAAATGACACGACGCCGGCCAGGAAGTAGTAGGTGTTCACCT
TGTTGGTGTCCAAGCCGATGAGCGGTCCCCCGGAGTCACCGCGACAGGAG
TCGACGCCTTCCTTGCCGCCGGCACACATCTGTGTGTCCTCGAGGAGAAT
GTCCTGGCTGCTGTAGACGTTCTGGCACTCATCCATCCGGAATCCCTCCA
CGGCTGCCTTCAGCTTGAGGTTGCTGGCCGACAGCTGCTCCGTTTTGCCC
CAGCCGGCCACGTCCATGGTGATGCCGTCGAAGGTGGCCGACCGCAGATT
GACGTCCAGAGGCAGGCAAATGGGTCGCACAAAGTCGGTGTACTCCACCT
GCTGGGCCAGACGCAGCAGGGCTATGTCGTTGACCTGGTTCTTGGAGGCC
GGTATATAGTCGGGATGGGGTATAGTACGCTCCACGGGCACGTCCAGATG
CGGTGGCGCGCAGTCCTTCATGCCGCGCACATCTACTTCGCAATCGGGAT
TAGTGTTGGTGTCCCATTCGCCCAAACGAACACCGGACAACCGCCAGTCG
GTGGGCAGTGCCTTTCCGTTGACACAATGCGAGGCTGTGATCACATATCT
TGTGCTGATCAAGGATCCGCCGCAATGGTGACCCTTTTTGCCCTGGCTTT
TGGTGTATTCAATTAGAGCCATCCAGGGGAACTCGTCGATCTTGGTCTTC
ATTCCGCCATAGATGC
BS16336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4920-PA | 1179 | ea-RA | 380..1179 | 816..17 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RB | 1527 | CG4920-RB | 681..1480 | 816..17 | 4000 | 100 | Minus |
ea-RA | 1430 | CG4920-RA | 584..1383 | 816..17 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329631..15330361 | 747..17 | 3655 | 100 | Minus |
3R | 32079331 | 3R | 15329498..15329567 | 816..747 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:46:01 has no hits.
BS16336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:35:56 Download gff for
BS16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4920-PA | 380..1179 | 17..816 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:47 Download gff for
BS16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 584..1383 | 17..816 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:44 Download gff for
BS16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 584..1383 | 17..816 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:44 Download gff for
BS16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15329498..15329566 | 748..816 | 100 | -> | Minus |
3R | 15329631..15330361 | 17..747 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:47 Download gff for
BS16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11155220..11155288 | 748..816 | 100 | -> | Minus |
arm_3R | 11155353..11156083 | 17..747 | 100 | | Minus |
BS16336.5prime Sequence
851 bp (759 high quality bases) assembled on 2007-05-15
> BS16336.5prime
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
G
BS16336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4920-PA | 1179 | ea-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1430 | CG4920-RA | 205..1039 | 17..851 | 4175 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 363..1136 | 78..851 | 3870 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 205..265 | 17..77 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329180..15329567 | 78..465 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 15329631..15330017 | 465..851 | 1935 | 100 | Plus |
3R | 32079331 | 3R | 15328933..15328993 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:57:36 has no hits.
BS16336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:29:51 Download gff for
BS16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4920-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:46:53 Download gff for
BS16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 197..1039 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:41 Download gff for
BS16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 197..1039 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:41 Download gff for
BS16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15328925..15328993 | 9..77 | 94 | -> | Plus |
3R | 15329180..15329566 | 78..464 | 100 | -> | Plus |
3R | 15329631..15330017 | 465..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:46:53 Download gff for
BS16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11154647..11154715 | 9..77 | 94 | -> | Plus |
arm_3R | 11154902..11155288 | 78..464 | 100 | -> | Plus |
arm_3R | 11155353..11155739 | 465..851 | 100 | | Plus |
BS16336.complete Sequence
1211 bp assembled on 2007-05-07
GenBank Submission: FJ638124
> BS16336.complete
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
GTGGCCGGCTGGGGCAAAACGGAGCAGCTGTCGGCCAGCAACCTCAAGCT
GAAGGCAGCCGTGGAGGGATTCCGGATGGATGAGTGCCAGAACGTCTACA
GCAGCCAGGACATTCTCCTCGAGGACACACAGATGTGTGCCGGCGGCAAG
GAAGGCGTCGACTCCTGTCGCGGTGACTCCGGGGGACCGCTCATCGGCTT
GGACACCAACAAGGTGAACACCTACTACTTCCTGGCCGGCGTCGTGTCAT
TTGGACCGACTCCGTGCGGTCTGGCCGGATGGCCAGGAGTTTACACGCTG
GTGGGCAAGTACGTTGATTGGATACAAAACACTATTGAGTCCTGAAAGCT
TTCTAGACCAT
BS16336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1179 | CG4920-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
ea-RB | 786 | CG4920-PB | 1..786 | 410..1195 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1430 | CG4920-RA | 205..1383 | 17..1195 | 5895 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 363..1480 | 78..1195 | 5590 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 205..265 | 17..77 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329631..15330361 | 465..1195 | 3655 | 100 | Plus |
3R | 32079331 | 3R | 15329180..15329567 | 78..465 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 15328933..15328993 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:30:39 has no hits.
BS16336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:42 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:03 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 196..1382 | 9..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:50 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 205..1382 | 17..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:42 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 196..1382 | 9..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:44 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 205..1382 | 17..1194 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:44 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15328933..15328993 | 17..77 | 100 | -> | Plus |
3R | 15329180..15329566 | 78..464 | 100 | -> | Plus |
3R | 15329631..15330360 | 465..1194 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:50 Download gff for
BS16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11154902..11155288 | 78..464 | 100 | -> | Plus |
arm_3R | 11154655..11154715 | 17..77 | 100 | -> | Plus |
arm_3R | 11155353..11156082 | 465..1194 | 100 | | Plus |
BS16336.pep Sequence
Translation from 16 to 1194
> BS16336.pep
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIES*
BS16336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-PA | 392 | CG4920-PA | 1..392 | 1..392 | 2127 | 100 | Plus |
ea-PB | 261 | CG4920-PB | 1..261 | 132..392 | 1416 | 100 | Plus |
MP1-PA | 390 | CG1102-PA | 26..390 | 34..392 | 1000 | 51 | Plus |
MP1-PC | 399 | CG1102-PC | 26..399 | 34..392 | 980 | 49.7 | Plus |
SPE-PA | 400 | CG16705-PA | 9..399 | 9..391 | 843 | 43.5 | Plus |