Clone Sequence Records
BS16347.3prime Sequence
842 bp (744 high quality bases) assembled on 2007-05-15
> BS16347.3prime
ATGGTCTAGAAAGCTTTCAGACTAGGATCCTTACCAACGACCACAGTGCT
AGTAGTGCCACAAAGCAAAGGACACCTTGCAGGATATGATGGAGCAGCTT
TAAACGCTTAATGAGCTTCTTGCCCTGTGCAATGGACTCTGGGGTGGGTG
CCTCGTTTCCCAAGAACTGTCTCATGCCACGCAGAGCTTGAACGAAGTAT
TCCTTCCAGTTGAGGCTGACCATATCAAAGTAGTATATCCTTCGATCCTC
CTCCGACATCTGCTGCCTCAAGTGATCCGTATTCCGCATGTCAAAGCGCC
AGCTTTTGCAGGCGAATGGGCCCAGGATGCCGAGAGTCTTGTGGATCTTT
TGGTAAACCTTTACTAGTCTGGGCTTCCGGCCACTCAGCCAGAGAGCCAG
GTCAAAAAAGTAGGCTGGCAGGGTGTGATAGAAGAAAGCTGCCAGGGGGA
AGAGCCACGGCACTGTGATGCAGTGGATGAAGGGATACCATATCATCTTT
GTCAGCGGGCAGTTGGTGCGTCCATCGAGAGCATGTCGAATGAACTCCCC
GTGGGTGATCTTGTTCTGCTCAATGGGCGCCAGTTGGTAGATGAGAGGAG
TTTCTTGTGTTCCCATCTCGTTACCTTCCACAATGGTCTTCCAGGTACAG
GCCAGAGTCAAATTGGCACAATAATCCACGGGCACCAGGCTTGCCTCGGC
ATGGTGATCGATGGTGGCAATGCGCAGTACTCCACGGGCCACCCCGAAAA
GAATTGCCATTGGTCCGTACATGTTGTCTATCCAGCCGGAGATGGGTTCC
TTGTGGGCCGCAATAATGACTGCCGGTCGGAAGATGCAAAGT
BS16347.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 1500 | CG17562-RA | 675..1500 | 842..17 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 775..1600 | 842..17 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16616222..16616933 | 816..105 | 3560 | 100 | Minus |
3R | 32079331 | 3R | 16616992..16617080 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:28:40 has no hits.
BS16347.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:15 Download gff for
BS16347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-PA | 675..1500 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:36 Download gff for
BS16347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 775..1600 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:26 Download gff for
BS16347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 775..1600 | 17..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:26 Download gff for
BS16347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16616139..16616164 | 817..842 | 100 | -> | Minus |
3R | 16616222..16616933 | 105..816 | 100 | -> | Minus |
3R | 16616993..16617080 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:36 Download gff for
BS16347.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12441861..12441886 | 817..842 | 100 | -> | Minus |
arm_3R | 12441944..12442655 | 105..816 | 100 | -> | Minus |
arm_3R | 12442715..12442802 | 17..104 | 100 | | Minus |
BS16347.5prime Sequence
858 bp (846 high quality bases) assembled on 2007-05-15
> BS16347.5prime
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGA
BS16347.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 1500 | CG17562-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG14893-PA | 1491 | CG14893-RA | 343..416 | 326..399 | 195 | 90.5 | Plus |
CG17560-PA | 1500 | CG17560-RA | 308..351 | 324..367 | 170 | 95.4 | Plus |
CG17560-PA | 1500 | CG17560-RA | 596..654 | 612..670 | 170 | 91.5 | Plus |
CG30427-PB | 1500 | CG30427-RB | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PA | 1500 | CG30427-RA | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PD | 1500 | CG30427-RD | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PC | 1521 | CG30427-RC | 425..456 | 429..460 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 101..942 | 17..858 | 4210 | 100 | Plus |
CG17560-RA | 1712 | CG17560-RA | 32..726 | 17..711 | 745 | 74.4 | Plus |
CG14893-RB | 1688 | CG14893-RB | 123..926 | 55..858 | 450 | 71.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16615653..16616164 | 205..716 | 2560 | 100 | Plus |
3R | 32079331 | 3R | 16615409..16615600 | 17..208 | 960 | 100 | Plus |
3R | 32079331 | 3R | 16616222..16616363 | 717..858 | 710 | 100 | Plus |
3R | 32079331 | 3R | 16618320..16618782 | 249..711 | 575 | 74.9 | Plus |
3R | 32079331 | 3R | 16621289..16621626 | 326..663 | 400 | 74.6 | Plus |
3R | 32079331 | 3R | 12392072..12392238 | 492..326 | 250 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:24:36 has no hits.
BS16347.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:10 Download gff for
BS16347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:49 Download gff for
BS16347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..941 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:20 Download gff for
BS16347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..941 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:20 Download gff for
BS16347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16615409..16615597 | 17..205 | 100 | -> | Plus |
3R | 16615654..16616164 | 206..716 | 100 | -> | Plus |
3R | 16616222..16616362 | 717..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:49 Download gff for
BS16347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12441131..12441319 | 17..205 | 100 | -> | Plus |
arm_3R | 12441376..12441886 | 206..716 | 100 | -> | Plus |
arm_3R | 12441944..12442084 | 717..857 | 100 | | Plus |
BS16347.complete Sequence
1532 bp assembled on 2007-05-07
GenBank Submission: FJ638125
> BS16347.complete
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGATTATTGTGCCAATTTGACTCTGGCCTGTACCTGGAAGACCAT
TGTGGAAGGTAACGAGATGGGAACACAAGAAACTCCTCTCATCTACCAAC
TGGCGCCCATTGAGCAGAACAAGATCACCCACGGGGAGTTCATTCGACAT
GCTCTCGATGGACGCACCAACTGCCCGCTGACAAAGATGATATGGTATCC
CTTCATCCACTGCATCACAGTGCCGTGGCTCTTCCCCCTGGCAGCTTTCT
TCTATCACACCCTGCCAGCCTACTTTTTTGACCTGGCTCTCTGGCTGAGT
GGCCGGAAGCCCAGACTAGTAAAGGTTTACCAAAAGATCCACAAGACTCT
CGGCATCCTGGGCCCATTCGCCTGCAAAAGCTGGCGCTTTGACATGCGGA
ATACGGATCACTTGAGGCAGCAGATGTCGGAGGAGGATCGAAGGATATAC
TACTTTGATATGGTCAGCCTCAACTGGAAGGAATACTTCGTTCAAGCTCT
GCGTGGCATGAGACAGTTCTTGGGAAACGAGGCACCCACCCCAGAGTCCA
TTGCACAGGGCAAGAAGCTCATTAAGCGTTTAAAGCTGCTCCATCATATC
CTGCAAGGTGTCCTTTGCTTTGTGGCACTACTAGCACTGTGGTCGTTGGT
AAGGATCCTAGTCTGAAAGCTTTCTAGACCAT
BS16347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1500 | CG17562-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
CG17560-RA | 1500 | CG17560-PA | 1..695 | 17..711 | 730 | 73.7 | Plus |
CG14893-RB | 1533 | CG14893-PB | 72..900 | 55..883 | 470 | 70.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 101..1600 | 17..1516 | 7500 | 100 | Plus |
CG17560-RA | 1712 | CG17560-RA | 32..726 | 17..711 | 730 | 73.7 | Plus |
CG14893-RB | 1688 | CG14893-RB | 123..951 | 55..883 | 470 | 70.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16616222..16616933 | 717..1428 | 3560 | 100 | Plus |
3R | 32079331 | 3R | 16615653..16616164 | 205..716 | 2560 | 100 | Plus |
3R | 32079331 | 3R | 16615409..16615600 | 17..208 | 960 | 100 | Plus |
3R | 32079331 | 3R | 16618320..16618782 | 249..711 | 575 | 74.9 | Plus |
3R | 32079331 | 3R | 16616992..16617080 | 1428..1516 | 445 | 100 | Plus |
3R | 32079331 | 3R | 16621289..16621626 | 326..663 | 400 | 74.6 | Plus |
3R | 32079331 | 3R | 12392072..12392238 | 492..326 | 250 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:10 has no hits.
BS16347.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:43 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 1..1500 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:05 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 99..1598 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:22 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..1599 | 17..1515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:43 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 99..1598 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:56 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..1599 | 17..1515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:56 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16615409..16615597 | 17..205 | 100 | -> | Plus |
3R | 16615654..16616164 | 206..716 | 100 | -> | Plus |
3R | 16616222..16616933 | 717..1428 | 100 | -> | Plus |
3R | 16616993..16617079 | 1429..1515 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:22 Download gff for
BS16347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12441131..12441319 | 17..205 | 100 | -> | Plus |
arm_3R | 12441376..12441886 | 206..716 | 100 | -> | Plus |
arm_3R | 12441944..12442655 | 717..1428 | 100 | -> | Plus |
arm_3R | 12442715..12442801 | 1429..1515 | 100 | | Plus |
BS16347.pep Sequence
Translation from 16 to 1515
> BS16347.pep
MDTDIQRCFRSKTVFLTGATGFLGKVVIEKLLRTTEVKRIYVLIRPKRGV
EIKDRIITWSKDAVFELLLKSKPEALQRVCPIAGDCLDFDLGISENDRRL
LASEVQIVIHGAATVRFNEPLHVALAINTRATKLMIQLAKEMRQLEAFVH
VSTAFSNCVIYNIKENFYPEHLNCSSDKVLAMAELMSDELLDNMEQALLG
SFPNTYTYTKALAEDVILKEAGGLPLCIFRPAVIIAAHKEPISGWIDNMY
GPMAILFGVARGVLRIATIDHHAEASLVPVDYCANLTLACTWKTIVEGNE
MGTQETPLIYQLAPIEQNKITHGEFIRHALDGRTNCPLTKMIWYPFIHCI
TVPWLFPLAAFFYHTLPAYFFDLALWLSGRKPRLVKVYQKIHKTLGILGP
FACKSWRFDMRNTDHLRQQMSEEDRRIYYFDMVSLNWKEYFVQALRGMRQ
FLGNEAPTPESIAQGKKLIKRLKLLHHILQGVLCFVALLALWSLVRILV*
BS16347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 499 | CG17562-PA | 1..499 | 1..499 | 2611 | 100 | Plus |
CG17560-PA | 499 | CG17560-PA | 1..499 | 1..499 | 1690 | 62.9 | Plus |
CG14893-PB | 510 | CG14893-PB | 12..510 | 1..499 | 1673 | 62.1 | Plus |
CG10096-PD | 502 | CG10096-PD | 1..498 | 1..499 | 1481 | 56.5 | Plus |
CG10096-PB | 502 | CG10096-PB | 1..498 | 1..499 | 1481 | 56.5 | Plus |