Clone BS16347 Report

Search the DGRC for BS16347

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG17562-RA
Protein status:BS16347.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16347.3prime Sequence

842 bp (744 high quality bases) assembled on 2007-05-15

> BS16347.3prime
ATGGTCTAGAAAGCTTTCAGACTAGGATCCTTACCAACGACCACAGTGCT
AGTAGTGCCACAAAGCAAAGGACACCTTGCAGGATATGATGGAGCAGCTT
TAAACGCTTAATGAGCTTCTTGCCCTGTGCAATGGACTCTGGGGTGGGTG
CCTCGTTTCCCAAGAACTGTCTCATGCCACGCAGAGCTTGAACGAAGTAT
TCCTTCCAGTTGAGGCTGACCATATCAAAGTAGTATATCCTTCGATCCTC
CTCCGACATCTGCTGCCTCAAGTGATCCGTATTCCGCATGTCAAAGCGCC
AGCTTTTGCAGGCGAATGGGCCCAGGATGCCGAGAGTCTTGTGGATCTTT
TGGTAAACCTTTACTAGTCTGGGCTTCCGGCCACTCAGCCAGAGAGCCAG
GTCAAAAAAGTAGGCTGGCAGGGTGTGATAGAAGAAAGCTGCCAGGGGGA
AGAGCCACGGCACTGTGATGCAGTGGATGAAGGGATACCATATCATCTTT
GTCAGCGGGCAGTTGGTGCGTCCATCGAGAGCATGTCGAATGAACTCCCC
GTGGGTGATCTTGTTCTGCTCAATGGGCGCCAGTTGGTAGATGAGAGGAG
TTTCTTGTGTTCCCATCTCGTTACCTTCCACAATGGTCTTCCAGGTACAG
GCCAGAGTCAAATTGGCACAATAATCCACGGGCACCAGGCTTGCCTCGGC
ATGGTGATCGATGGTGGCAATGCGCAGTACTCCACGGGCCACCCCGAAAA
GAATTGCCATTGGTCCGTACATGTTGTCTATCCAGCCGGAGATGGGTTCC
TTGTGGGCCGCAATAATGACTGCCGGTCGGAAGATGCAAAGT

BS16347.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 1500 CG17562-RA 675..1500 842..17 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 775..1600 842..17 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16616222..16616933 816..105 3560 100 Minus
3R 32079331 3R 16616992..16617080 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:28:40 has no hits.

BS16347.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:15 Download gff for BS16347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-PA 675..1500 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:36 Download gff for BS16347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 775..1600 17..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:26 Download gff for BS16347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 775..1600 17..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:26 Download gff for BS16347.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16616139..16616164 817..842 100 -> Minus
3R 16616222..16616933 105..816 100 -> Minus
3R 16616993..16617080 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:36 Download gff for BS16347.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441861..12441886 817..842 100 -> Minus
arm_3R 12441944..12442655 105..816 100 -> Minus
arm_3R 12442715..12442802 17..104 100   Minus

BS16347.5prime Sequence

858 bp (846 high quality bases) assembled on 2007-05-15

> BS16347.5prime
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGA

BS16347.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 1500 CG17562-RA 1..842 17..858 4210 100 Plus
CG14893-PA 1491 CG14893-RA 343..416 326..399 195 90.5 Plus
CG17560-PA 1500 CG17560-RA 308..351 324..367 170 95.4 Plus
CG17560-PA 1500 CG17560-RA 596..654 612..670 170 91.5 Plus
CG30427-PB 1500 CG30427-RB 425..456 429..460 135 96.8 Plus
CG30427-PA 1500 CG30427-RA 425..456 429..460 135 96.8 Plus
CG30427-PD 1500 CG30427-RD 425..456 429..460 135 96.8 Plus
CG30427-PC 1521 CG30427-RC 425..456 429..460 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 101..942 17..858 4210 100 Plus
CG17560-RA 1712 CG17560-RA 32..726 17..711 745 74.4 Plus
CG14893-RB 1688 CG14893-RB 123..926 55..858 450 71.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16615653..16616164 205..716 2560 100 Plus
3R 32079331 3R 16615409..16615600 17..208 960 100 Plus
3R 32079331 3R 16616222..16616363 717..858 710 100 Plus
3R 32079331 3R 16618320..16618782 249..711 575 74.9 Plus
3R 32079331 3R 16621289..16621626 326..663 400 74.6 Plus
3R 32079331 3R 12392072..12392238 492..326 250 76.6 Minus
Blast to na_te.dros performed on 2015-02-11 02:24:36 has no hits.

BS16347.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:10 Download gff for BS16347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:49 Download gff for BS16347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..941 17..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:20 Download gff for BS16347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..941 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:20 Download gff for BS16347.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16615409..16615597 17..205 100 -> Plus
3R 16615654..16616164 206..716 100 -> Plus
3R 16616222..16616362 717..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:49 Download gff for BS16347.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441131..12441319 17..205 100 -> Plus
arm_3R 12441376..12441886 206..716 100 -> Plus
arm_3R 12441944..12442084 717..857 100   Plus

BS16347.complete Sequence

1532 bp assembled on 2007-05-07

GenBank Submission: FJ638125

> BS16347.complete
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGATTATTGTGCCAATTTGACTCTGGCCTGTACCTGGAAGACCAT
TGTGGAAGGTAACGAGATGGGAACACAAGAAACTCCTCTCATCTACCAAC
TGGCGCCCATTGAGCAGAACAAGATCACCCACGGGGAGTTCATTCGACAT
GCTCTCGATGGACGCACCAACTGCCCGCTGACAAAGATGATATGGTATCC
CTTCATCCACTGCATCACAGTGCCGTGGCTCTTCCCCCTGGCAGCTTTCT
TCTATCACACCCTGCCAGCCTACTTTTTTGACCTGGCTCTCTGGCTGAGT
GGCCGGAAGCCCAGACTAGTAAAGGTTTACCAAAAGATCCACAAGACTCT
CGGCATCCTGGGCCCATTCGCCTGCAAAAGCTGGCGCTTTGACATGCGGA
ATACGGATCACTTGAGGCAGCAGATGTCGGAGGAGGATCGAAGGATATAC
TACTTTGATATGGTCAGCCTCAACTGGAAGGAATACTTCGTTCAAGCTCT
GCGTGGCATGAGACAGTTCTTGGGAAACGAGGCACCCACCCCAGAGTCCA
TTGCACAGGGCAAGAAGCTCATTAAGCGTTTAAAGCTGCTCCATCATATC
CTGCAAGGTGTCCTTTGCTTTGTGGCACTACTAGCACTGTGGTCGTTGGT
AAGGATCCTAGTCTGAAAGCTTTCTAGACCAT

BS16347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1500 CG17562-PA 1..1500 17..1516 7500 100 Plus
CG17560-RA 1500 CG17560-PA 1..695 17..711 730 73.7 Plus
CG14893-RB 1533 CG14893-PB 72..900 55..883 470 70.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 101..1600 17..1516 7500 100 Plus
CG17560-RA 1712 CG17560-RA 32..726 17..711 730 73.7 Plus
CG14893-RB 1688 CG14893-RB 123..951 55..883 470 70.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16616222..16616933 717..1428 3560 100 Plus
3R 32079331 3R 16615653..16616164 205..716 2560 100 Plus
3R 32079331 3R 16615409..16615600 17..208 960 100 Plus
3R 32079331 3R 16618320..16618782 249..711 575 74.9 Plus
3R 32079331 3R 16616992..16617080 1428..1516 445 100 Plus
3R 32079331 3R 16621289..16621626 326..663 400 74.6 Plus
3R 32079331 3R 12392072..12392238 492..326 250 76.6 Minus
Blast to na_te.dros performed on 2014-11-26 16:51:10 has no hits.

BS16347.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:43 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 1..1500 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:05 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 99..1598 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:22 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1599 17..1515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:43 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 99..1598 17..1516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:56 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1599 17..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:56 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16615409..16615597 17..205 100 -> Plus
3R 16615654..16616164 206..716 100 -> Plus
3R 16616222..16616933 717..1428 100 -> Plus
3R 16616993..16617079 1429..1515 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:22 Download gff for BS16347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441131..12441319 17..205 100 -> Plus
arm_3R 12441376..12441886 206..716 100 -> Plus
arm_3R 12441944..12442655 717..1428 100 -> Plus
arm_3R 12442715..12442801 1429..1515 100   Plus

BS16347.pep Sequence

Translation from 16 to 1515

> BS16347.pep
MDTDIQRCFRSKTVFLTGATGFLGKVVIEKLLRTTEVKRIYVLIRPKRGV
EIKDRIITWSKDAVFELLLKSKPEALQRVCPIAGDCLDFDLGISENDRRL
LASEVQIVIHGAATVRFNEPLHVALAINTRATKLMIQLAKEMRQLEAFVH
VSTAFSNCVIYNIKENFYPEHLNCSSDKVLAMAELMSDELLDNMEQALLG
SFPNTYTYTKALAEDVILKEAGGLPLCIFRPAVIIAAHKEPISGWIDNMY
GPMAILFGVARGVLRIATIDHHAEASLVPVDYCANLTLACTWKTIVEGNE
MGTQETPLIYQLAPIEQNKITHGEFIRHALDGRTNCPLTKMIWYPFIHCI
TVPWLFPLAAFFYHTLPAYFFDLALWLSGRKPRLVKVYQKIHKTLGILGP
FACKSWRFDMRNTDHLRQQMSEEDRRIYYFDMVSLNWKEYFVQALRGMRQ
FLGNEAPTPESIAQGKKLIKRLKLLHHILQGVLCFVALLALWSLVRILV*

BS16347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 499 CG17562-PA 1..499 1..499 2611 100 Plus
CG17560-PA 499 CG17560-PA 1..499 1..499 1690 62.9 Plus
CG14893-PB 510 CG14893-PB 12..510 1..499 1673 62.1 Plus
CG10096-PD 502 CG10096-PD 1..498 1..499 1481 56.5 Plus
CG10096-PB 502 CG10096-PB 1..498 1..499 1481 56.5 Plus