Clone Sequence Records
BS16349.3prime Sequence
279 bp (279 high quality bases) assembled on 2007-05-15
> BS16349.3prime
ATGGTCTAGAAAGCTTTTAATTTGCTGTTTCACAGGCATCTACCCAATCA
TTGTAAACATCGATAGGTTCTGAAAGGAAGTTAATTCCCGTTTGAAAATC
CTCCAAGCACACCCTACAAGTTATTTTCGCTGTATTTCTGCTTTTATCCA
TTTTAACCTCACACGATTTTTCATGGTTGCAAAATGGACAATTAAATTGT
TGATCAAGGGGTTCAATATTCTTTCTCTTCGGAGGCGGTTTTCTTTTAGA
CTTCCTTCTCCCCATGTCGACTGATAACT
BS16349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 16:33:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40228-RD | 439 | CG40228-RD | 68..317 | 265..16 | 1250 | 100 | Minus |
CG40228-RC | 1686 | CG40228-RC | 68..317 | 265..16 | 1250 | 100 | Minus |
CG40228-RF | 426 | CG40228-RF | 68..304 | 265..16 | 1045 | 94.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27083460..27083593 | 16..149 | 670 | 100 | Plus |
3L | 28110227 | 3L | 27083723..27083839 | 149..265 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:35:13 has no hits.
BS16349.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:51 Download gff for
BS16349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..317 | 16..265 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:26 Download gff for
BS16349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..317 | 16..265 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:26 Download gff for
BS16349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27083460..27083593 | 16..149 | 100 | <- | Plus |
3L | 27083724..27083839 | 150..265 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:51 Download gff for
BS16349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2190285..2190418 | 16..149 | 100 | <- | Plus |
3LHet | 2190549..2190664 | 150..265 | 100 | | Plus |
BS16349.5prime Sequence
279 bp (279 high quality bases) assembled on 2007-05-15
> BS16349.5prime
GAAGTTATCAGTCGACATGGGGAGAAGGAAGTCTAAAAGAAAACCGCCTC
CGAAGAGAAAGAATATTGAACCCCTTGATCAACAATTTAATTGTCCATTT
TGCAACCATGAAAAATCGTGTGAGGTTAAAATGGATAAAAGCAGAAATAC
AGCGAAAATAACTTGTAGGGTGTGCTTGGAGGATTTTCAAACGGGAATTA
ACTTCCTTTCAGAACCTATCGATGTTTACAATGATTGGGTAGATGCCTGT
GAAACAGCAAATTAAAAGCTTTCTAGACC
BS16349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 16:27:27 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40228-RD | 439 | CG40228-RD | 68..317 | 17..266 | 1250 | 100 | Plus |
CG40228-RC | 1686 | CG40228-RC | 68..317 | 17..266 | 1250 | 100 | Plus |
CG40228-RF | 426 | CG40228-RF | 68..304 | 17..266 | 1045 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27083460..27083593 | 266..133 | 670 | 100 | Minus |
3L | 28110227 | 3L | 27083723..27083839 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:25:10 has no hits.
BS16349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:25 Download gff for
BS16349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..317 | 17..266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:53 Download gff for
BS16349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..317 | 17..266 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:53 Download gff for
BS16349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27083724..27083839 | 17..132 | 100 | | Minus |
3L | 27083460..27083593 | 133..266 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:25 Download gff for
BS16349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2190285..2190418 | 133..266 | 100 | <- | Minus |
3LHet | 2190549..2190664 | 17..132 | 100 | | Minus |
BS16349.complete Sequence
281 bp assembled on 2007-05-07
GenBank Submission: FJ638126
> BS16349.complete
GAAGTTATCAGTCGACATGGGGAGAAGGAAGTCTAAAAGAAAACCGCCTC
CGAAGAGAAAGAATATTGAACCCCTTGATCAACAATTTAATTGTCCATTT
TGCAACCATGAAAAATCGTGTGAGGTTAAAATGGATAAAAGCAGAAATAC
AGCGAAAATAACTTGTAGGGTGTGCTTGGAGGATTTTCAAACGGGAATTA
ACTTCCTTTCAGAACCTATCGATGTTTACAATGATTGGGTAGATGCCTGT
GAAACAGCAAATTAAAAGCTTTCTAGACCAT
BS16349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40228-RD | 249 | CG40228-PD | 1..249 | 17..265 | 1245 | 100 | Plus |
CG40228-RC | 249 | CG40228-PC | 1..249 | 17..265 | 1245 | 100 | Plus |
CG40228-RE | 234 | CG40228-PE | 1..234 | 17..265 | 985 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40228-RD | 439 | CG40228-RD | 68..317 | 17..266 | 1250 | 100 | Plus |
CG40228-RC | 1686 | CG40228-RC | 68..317 | 17..266 | 1250 | 100 | Plus |
CG40228-RF | 426 | CG40228-RF | 68..304 | 17..266 | 1020 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27083460..27083593 | 266..133 | 670 | 100 | Minus |
3L | 28110227 | 3L | 27083723..27083839 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:58 has no hits.
BS16349.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:46 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 1..249 | 17..265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:17 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 47..296 | 17..266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:23 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..314 | 17..263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:47 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 47..296 | 17..266 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:20 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40228-RC | 68..314 | 17..263 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:20 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27083463..27083593 | 133..263 | 100 | <- | Minus |
3L | 27083724..27083839 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:23 Download gff for
BS16349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2190288..2190418 | 133..263 | 100 | <- | Minus |
3LHet | 2190549..2190664 | 17..132 | 100 | | Minus |
BS16349.pep Sequence
Translation from 16 to 264
> BS16349.pep
MGRRKSKRKPPPKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITC
RVCLEDFQTGINFLSEPIDVYNDWVDACETAN*
BS16349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40228-PD | 82 | CG40228-PD | 1..82 | 1..82 | 458 | 100 | Plus |
CG40228-PC | 82 | CG40228-PC | 1..82 | 1..82 | 458 | 100 | Plus |
CG40228-PE | 77 | CG40228-PE | 1..77 | 1..82 | 414 | 93.9 | Plus |
CG6244-PA | 82 | CG6244-PA | 1..82 | 1..82 | 306 | 63.4 | Plus |
CG40228-PF | 43 | CG40228-PF | 1..34 | 1..34 | 194 | 100 | Plus |