Clone BS16349 Report

Search the DGRC for BS16349

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG40228-RC
Protein status:BS16349.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16349.3prime Sequence

279 bp (279 high quality bases) assembled on 2007-05-15

> BS16349.3prime
ATGGTCTAGAAAGCTTTTAATTTGCTGTTTCACAGGCATCTACCCAATCA
TTGTAAACATCGATAGGTTCTGAAAGGAAGTTAATTCCCGTTTGAAAATC
CTCCAAGCACACCCTACAAGTTATTTTCGCTGTATTTCTGCTTTTATCCA
TTTTAACCTCACACGATTTTTCATGGTTGCAAAATGGACAATTAAATTGT
TGATCAAGGGGTTCAATATTCTTTCTCTTCGGAGGCGGTTTTCTTTTAGA
CTTCCTTCTCCCCATGTCGACTGATAACT

BS16349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 16:33:23 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG40228-RD 439 CG40228-RD 68..317 265..16 1250 100 Minus
CG40228-RC 1686 CG40228-RC 68..317 265..16 1250 100 Minus
CG40228-RF 426 CG40228-RF 68..304 265..16 1045 94.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27083460..27083593 16..149 670 100 Plus
3L 28110227 3L 27083723..27083839 149..265 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:35:13 has no hits.

BS16349.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:51 Download gff for BS16349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..317 16..265 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:26 Download gff for BS16349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..317 16..265 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:26 Download gff for BS16349.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 27083460..27083593 16..149 100 <- Plus
3L 27083724..27083839 150..265 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:51 Download gff for BS16349.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2190285..2190418 16..149 100 <- Plus
3LHet 2190549..2190664 150..265 100   Plus

BS16349.5prime Sequence

279 bp (279 high quality bases) assembled on 2007-05-15

> BS16349.5prime
GAAGTTATCAGTCGACATGGGGAGAAGGAAGTCTAAAAGAAAACCGCCTC
CGAAGAGAAAGAATATTGAACCCCTTGATCAACAATTTAATTGTCCATTT
TGCAACCATGAAAAATCGTGTGAGGTTAAAATGGATAAAAGCAGAAATAC
AGCGAAAATAACTTGTAGGGTGTGCTTGGAGGATTTTCAAACGGGAATTA
ACTTCCTTTCAGAACCTATCGATGTTTACAATGATTGGGTAGATGCCTGT
GAAACAGCAAATTAAAAGCTTTCTAGACC

BS16349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-15 16:27:27 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG40228-RD 439 CG40228-RD 68..317 17..266 1250 100 Plus
CG40228-RC 1686 CG40228-RC 68..317 17..266 1250 100 Plus
CG40228-RF 426 CG40228-RF 68..304 17..266 1045 94.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27083460..27083593 266..133 670 100 Minus
3L 28110227 3L 27083723..27083839 133..17 585 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:25:10 has no hits.

BS16349.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:25 Download gff for BS16349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..317 17..266 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:53 Download gff for BS16349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..317 17..266 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:53 Download gff for BS16349.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 27083724..27083839 17..132 100   Minus
3L 27083460..27083593 133..266 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:25 Download gff for BS16349.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2190285..2190418 133..266 100 <- Minus
3LHet 2190549..2190664 17..132 100   Minus

BS16349.complete Sequence

281 bp assembled on 2007-05-07

GenBank Submission: FJ638126

> BS16349.complete
GAAGTTATCAGTCGACATGGGGAGAAGGAAGTCTAAAAGAAAACCGCCTC
CGAAGAGAAAGAATATTGAACCCCTTGATCAACAATTTAATTGTCCATTT
TGCAACCATGAAAAATCGTGTGAGGTTAAAATGGATAAAAGCAGAAATAC
AGCGAAAATAACTTGTAGGGTGTGCTTGGAGGATTTTCAAACGGGAATTA
ACTTCCTTTCAGAACCTATCGATGTTTACAATGATTGGGTAGATGCCTGT
GAAACAGCAAATTAAAAGCTTTCTAGACCAT

BS16349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG40228-RD 249 CG40228-PD 1..249 17..265 1245 100 Plus
CG40228-RC 249 CG40228-PC 1..249 17..265 1245 100 Plus
CG40228-RE 234 CG40228-PE 1..234 17..265 985 94 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG40228-RD 439 CG40228-RD 68..317 17..266 1250 100 Plus
CG40228-RC 1686 CG40228-RC 68..317 17..266 1250 100 Plus
CG40228-RF 426 CG40228-RF 68..304 17..266 1020 94.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27083460..27083593 266..133 670 100 Minus
3L 28110227 3L 27083723..27083839 133..17 585 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:39:58 has no hits.

BS16349.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:46 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 1..249 17..265 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:31:17 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 47..296 17..266 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:23 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..314 17..263 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:47 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 47..296 17..266 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:20 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
CG40228-RC 68..314 17..263 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:20 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27083463..27083593 133..263 100 <- Minus
3L 27083724..27083839 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:23 Download gff for BS16349.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 2190288..2190418 133..263 100 <- Minus
3LHet 2190549..2190664 17..132 100   Minus

BS16349.pep Sequence

Translation from 16 to 264

> BS16349.pep
MGRRKSKRKPPPKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITC
RVCLEDFQTGINFLSEPIDVYNDWVDACETAN*

BS16349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG40228-PD 82 CG40228-PD 1..82 1..82 458 100 Plus
CG40228-PC 82 CG40228-PC 1..82 1..82 458 100 Plus
CG40228-PE 77 CG40228-PE 1..77 1..82 414 93.9 Plus
CG6244-PA 82 CG6244-PA 1..82 1..82 306 63.4 Plus
CG40228-PF 43 CG40228-PF 1..34 1..34 194 100 Plus