Clone BS16352 Report

Search the DGRC for BS16352

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptOsi12-RA
Protein status:BS16352.pep: full length peptide match
Sequenced Size:920

Clone Sequence Records

BS16352.complete Sequence

920 bp assembled on 2010-02-09

GenBank Submission: KX806537

> BS16352.complete
GAAGTTATCAGTCGACATGATATTCAAGCAGTGGCCCTGGCAGGCCCTCA
TCAGCCTACTCTCCGTGTTGTTCCTCGCCAGCAGTTGTGGGGCGGCCACC
GAGCAGCTGGGCAGCCCGCCCGGTCCCAGCCCATCCCAGAGCGCCGGGGC
ACGGACCCTCCTCAGGGTCTACGACGAGTGCACCCGCGCCGAGGCCGGAT
TCGTGCCATGTCTGAAAAAGAAGGCCATATCCTTTATCGACCGCCTGGCC
CCCATCGACGCCATCAACGTGGCCGAGGGCATCAAGCTGGTGCGCCTGGA
AACAGCTCCCCGTCCGCCTGCCACGAGCGAGAACGAGCTGGAGTCCTCGC
TGCCCCGATCCGGCAGCGACCGAGATGCCAAGCTCACCAACATGCTGATC
GAGCGTCTCAGCTACTTCTTCAACGGTCACTCCCTGCAGGTCAGCTTCCC
CAAGCTCACATCCGATGAGATTGGACGCGGACTAGAGGAAGGTCGTGGTA
AAATGAAGAAGATGATGGGCATGATGATGATGGGCATGGCCATGAAGATG
ATGGGCATGATTCCGATTGCCATGGGTGCGCTCTACATCCTGGCAGGCAA
GGCACTGATTATCTCGAAGATCGCCCTGCTCCTAGCGGGCATCATCGGGC
TGAAGAAGCTGATGTCCGGCAAGTCGTCAGGCGGCAGTTCTGGCTGGTCC
TCCGGAGGCGGCGGAGGAGGCGGTGGCTGGTCATCCGGAGGCGGCGGTGG
AGGAGGCGGTGGCTGGGACCGACGATCCCTGACCGAGGCCCAGGAGCTGG
CCTACCGAGCCCACCACCAGGAGCAGGTGGCTCACGCACAGAGCCGCCCG
CAGCTGCAGCATCTGCATCCGAAAGCAGCTGCGCCGCAAGTGACCAAATC
GTAGAAGCTTTCTAGACCAT

BS16352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-RA 888 CG1154-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-RA 1755 CG1154-RA 177..1064 17..904 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6278707..6279183 17..493 2385 100 Plus
3R 32079331 3R 6281390..6281804 490..904 2075 100 Plus
Blast to na_te.dros performed 2014-11-28 04:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10758..10790 409..377 111 81.8 Minus

BS16352.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:41 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 177..1064 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:21 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 177..1064 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:24 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 177..1064 17..904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:12 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 177..1064 17..904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:12 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6278707..6279181 17..491 100 -> Plus
3R 6281392..6281804 492..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:21 Download gff for BS16352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2104429..2104903 17..491 100 -> Plus
arm_3R 2107114..2107526 492..904 100   Plus

BS16352.3prime Sequence

869 bp (806 high quality bases) assembled on 2007-05-15

> BS16352.3prime
ATGGTCTAGAAAGCTTCTACGATTTGGTCACTTGCGGCGCAGCTGCTTTC
GGATGCAGATGCTGCAGCTGCGGGCGGCTCTGTGCGTGAGCCACCTGCTC
CTGGTGGTGGGCTCGGTAGGCCAGCTCCTGGGCCTCGGTCAGGGATCGTC
GGTCCCAGCCACCGCCTCCTCCACCGCCGCCTCCGGATGACCAGCCACCG
CCTCCTCCGCCGCCTCCGGAGGACCAGCCAGAACTGCCGCCTGACGACTT
GCCGGACATCAGCTTCTTCAGCCCGATGATGCCCGCTAGGAGCAGGGCGA
TCTTCGAGATAATCAGTGCCTTGCCTGCCAGGATGTAGAGCGCACCCATG
GCAATCGGAATCATGCCCATCATCTTCATGGCCATGCCCATCATCATCAT
GCCCATCATCTTCTTCATTTTACCACGACCTTCCTCTAGTCCGCGTCCAA
TCTCATCGGATGTGAGCTTGGGGAAGCTGACCTGCAGGGAGTGACCGTTG
AAGAAGTAGCTGAGACGCTCGATCAGCATGTTGGTGAGCTTGGCATCTCG
GTCGCTGCCGGATCGGGGCAGCGAGGACTCCAGCTCGTTCTCGCTCGTGG
CAGGCGGACGGGGAGCTGTTTCCAGGCGCACCAGCTTGATGCCCTCGGCC
ACGTTGATGGCGTCGATGGGGGCCAGGCGGTCGATAAAGGATATGGCCTT
CTTTTTCAGACATGGCACGAATCCGGCCTCGGCGCGGGTGCACTCGTCGT
AGACCCTGAGGAGGGTCCGTGCCCCGGCGCTCTGGGATGGGCTGGGACCG
GGCGGGCTGGCCAGCTGCTCGGTGGCCGCCCCACAACTGCTGGCGAGGAA
CACACGGAGAGTAGGCTGA

BS16352.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1154-PA 888 Osi12-RA 53..888 852..17 4155 99.8 Minus
CG13376-PA 582 CG13376-RA 196..257 226..165 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-RA 1755 CG1154-RA 211..1064 869..17 4230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6278741..6279183 869..428 2150 99.5 Minus
3R 32079331 3R 6281390..6281804 431..17 2075 100 Minus
Blast to na_te.dros performed 2015-02-12 10:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10758..10790 512..544 111 81.8 Plus

BS16352.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:23 Download gff for BS16352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1154-PA 36..888 17..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:20 Download gff for BS16352.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 212..1064 17..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:03 Download gff for BS16352.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 212..1064 17..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:03 Download gff for BS16352.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6278742..6279181 430..868 99 -> Minus
3R 6281392..6281804 17..429 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:20 Download gff for BS16352.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2104464..2104903 430..868 99 -> Minus
arm_3R 2107114..2107526 17..429 100   Minus

BS16352.5prime Sequence

822 bp (750 high quality bases) assembled on 2007-05-15

> BS16352.5prime
GAAGTTATCATTCGACATGATATTCAAGCAGTGGCCCTGGCAGGCCCTCA
TCAGCCTACTCTCCGTGTTGTTCCTCGCCAGCAGTTGTGGGGCGGCCACC
GAGCAGCTGGGCAGCCCGCCCGGTCCCAGCCCATCCCAGAGCGCCGGGGC
ACGGACCCTCCTCAGGGTCTACGACGAGTGCACCCGCGCCGAGGCCGGAT
TCGTGCCATGTCTGAAAAAGAAGGCCATATCCTTTATCGACCGCCTGGCC
CCCATCGACGCCATCAACGTGGCCGAGGGCATCAAGCTGGTGCGCCTGGA
AACAGCTCCCCGTCCGCCTGCCACGAGCGAGAACGAGCTGGAGTCCTCGC
TGCCCCGATCCGGCAGCGACCGAGATGCCAAGCTCACCAACATGCTGATC
GAGCGTCTCAGCTACTTCTTCAACGGTCACTCCCTGCAGGTCAGCTTCCC
CAAGCTCACATCCGATGAGATTGGACGCGGACTAGAGGAAGGTCGTGGTA
AAATGAAGAAGATGATGGGCATGATGATGATGGGCATGGCCATGAAGATG
ATGGGCATGATTCCGATTGCCATGGGTGCGCTCTACATCCTGGCAGGCAA
GGCACTGATTATCTCGAAGATCGCCCTGCTCCTAGCGGGCATCATCGGGC
TGAAGAAGCTGATGTCCGGCAAGTCGTCAGGCGGCAGTTCTGGCTGGTCC
TCCGGAGGCGGCGGAGGAGGCGGTGGCTGGTCATCCGGAGGCGGCGGTGG
AGGAGGCGGTGGCTGGGACCGACGATCCCTGACCGAGGCCCAGGAGCTGG
CCTACCGAGCCCACCACCAGGA

BS16352.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1154-PA 888 Osi12-RA 1..806 17..822 4030 100 Plus
CG13376-PA 582 CG13376-RA 196..257 695..756 135 88.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-RA 1755 CG1154-RA 177..982 17..822 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6278707..6279183 17..493 2385 100 Plus
3R 32079331 3R 6281390..6281722 490..822 1665 100 Plus
Blast to na_te.dros performed 2015-02-04 21:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10758..10790 409..377 111 81.8 Minus

BS16352.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:20 Download gff for BS16352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1154-PA 1..805 17..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:35 Download gff for BS16352.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 175..981 14..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:04 Download gff for BS16352.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi12-RA 175..981 14..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:04 Download gff for BS16352.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6278705..6279181 14..491 99 -> Plus
3R 6281392..6281721 492..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:35 Download gff for BS16352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2104427..2104903 14..491 99 -> Plus
arm_3R 2107114..2107443 492..821 100   Plus

BS16352.pep Sequence

Translation from 16 to 903

> BS16352.pep
MIFKQWPWQALISLLSVLFLASSCGAATEQLGSPPGPSPSQSAGARTLLR
VYDECTRAEAGFVPCLKKKAISFIDRLAPIDAINVAEGIKLVRLETAPRP
PATSENELESSLPRSGSDRDAKLTNMLIERLSYFFNGHSLQVSFPKLTSD
EIGRGLEEGRGKMKKMMGMMMMGMAMKMMGMIPIAMGALYILAGKALIIS
KIALLLAGIIGLKKLMSGKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGW
DRRSLTEAQELAYRAHHQEQVAHAQSRPQLQHLHPKAAAPQVTKS*

BS16352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Osi12-PA 295 CG1154-PA 1..295 1..295 1515 100 Plus
Osi14-PA 268 CG1155-PA 3..268 11..269 286 28.5 Plus
Osi9-PA 233 CG15592-PA 29..194 49..219 276 38.5 Plus
Osi8-PA 274 CG15591-PA 63..269 50..247 268 34 Plus
Osi7-PA 288 CG1153-PA 43..287 51..270 259 32.3 Plus