Clone Sequence Records
BS16352.complete Sequence
920 bp assembled on 2010-02-09
GenBank Submission: KX806537
> BS16352.complete
GAAGTTATCAGTCGACATGATATTCAAGCAGTGGCCCTGGCAGGCCCTCA
TCAGCCTACTCTCCGTGTTGTTCCTCGCCAGCAGTTGTGGGGCGGCCACC
GAGCAGCTGGGCAGCCCGCCCGGTCCCAGCCCATCCCAGAGCGCCGGGGC
ACGGACCCTCCTCAGGGTCTACGACGAGTGCACCCGCGCCGAGGCCGGAT
TCGTGCCATGTCTGAAAAAGAAGGCCATATCCTTTATCGACCGCCTGGCC
CCCATCGACGCCATCAACGTGGCCGAGGGCATCAAGCTGGTGCGCCTGGA
AACAGCTCCCCGTCCGCCTGCCACGAGCGAGAACGAGCTGGAGTCCTCGC
TGCCCCGATCCGGCAGCGACCGAGATGCCAAGCTCACCAACATGCTGATC
GAGCGTCTCAGCTACTTCTTCAACGGTCACTCCCTGCAGGTCAGCTTCCC
CAAGCTCACATCCGATGAGATTGGACGCGGACTAGAGGAAGGTCGTGGTA
AAATGAAGAAGATGATGGGCATGATGATGATGGGCATGGCCATGAAGATG
ATGGGCATGATTCCGATTGCCATGGGTGCGCTCTACATCCTGGCAGGCAA
GGCACTGATTATCTCGAAGATCGCCCTGCTCCTAGCGGGCATCATCGGGC
TGAAGAAGCTGATGTCCGGCAAGTCGTCAGGCGGCAGTTCTGGCTGGTCC
TCCGGAGGCGGCGGAGGAGGCGGTGGCTGGTCATCCGGAGGCGGCGGTGG
AGGAGGCGGTGGCTGGGACCGACGATCCCTGACCGAGGCCCAGGAGCTGG
CCTACCGAGCCCACCACCAGGAGCAGGTGGCTCACGCACAGAGCCGCCCG
CAGCTGCAGCATCTGCATCCGAAAGCAGCTGCGCCGCAAGTGACCAAATC
GTAGAAGCTTTCTAGACCAT
BS16352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi12-RA | 888 | CG1154-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi12-RA | 1755 | CG1154-RA | 177..1064 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6278707..6279183 | 17..493 | 2385 | 100 | Plus |
3R | 32079331 | 3R | 6281390..6281804 | 490..904 | 2075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 10758..10790 | 409..377 | 111 | 81.8 | Minus |
BS16352.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:41 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 177..1064 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:21 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 177..1064 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:24 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 177..1064 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:12 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 177..1064 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:12 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6278707..6279181 | 17..491 | 100 | -> | Plus |
3R | 6281392..6281804 | 492..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:21 Download gff for
BS16352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2104429..2104903 | 17..491 | 100 | -> | Plus |
arm_3R | 2107114..2107526 | 492..904 | 100 | | Plus |
BS16352.3prime Sequence
869 bp (806 high quality bases) assembled on 2007-05-15
> BS16352.3prime
ATGGTCTAGAAAGCTTCTACGATTTGGTCACTTGCGGCGCAGCTGCTTTC
GGATGCAGATGCTGCAGCTGCGGGCGGCTCTGTGCGTGAGCCACCTGCTC
CTGGTGGTGGGCTCGGTAGGCCAGCTCCTGGGCCTCGGTCAGGGATCGTC
GGTCCCAGCCACCGCCTCCTCCACCGCCGCCTCCGGATGACCAGCCACCG
CCTCCTCCGCCGCCTCCGGAGGACCAGCCAGAACTGCCGCCTGACGACTT
GCCGGACATCAGCTTCTTCAGCCCGATGATGCCCGCTAGGAGCAGGGCGA
TCTTCGAGATAATCAGTGCCTTGCCTGCCAGGATGTAGAGCGCACCCATG
GCAATCGGAATCATGCCCATCATCTTCATGGCCATGCCCATCATCATCAT
GCCCATCATCTTCTTCATTTTACCACGACCTTCCTCTAGTCCGCGTCCAA
TCTCATCGGATGTGAGCTTGGGGAAGCTGACCTGCAGGGAGTGACCGTTG
AAGAAGTAGCTGAGACGCTCGATCAGCATGTTGGTGAGCTTGGCATCTCG
GTCGCTGCCGGATCGGGGCAGCGAGGACTCCAGCTCGTTCTCGCTCGTGG
CAGGCGGACGGGGAGCTGTTTCCAGGCGCACCAGCTTGATGCCCTCGGCC
ACGTTGATGGCGTCGATGGGGGCCAGGCGGTCGATAAAGGATATGGCCTT
CTTTTTCAGACATGGCACGAATCCGGCCTCGGCGCGGGTGCACTCGTCGT
AGACCCTGAGGAGGGTCCGTGCCCCGGCGCTCTGGGATGGGCTGGGACCG
GGCGGGCTGGCCAGCTGCTCGGTGGCCGCCCCACAACTGCTGGCGAGGAA
CACACGGAGAGTAGGCTGA
BS16352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1154-PA | 888 | Osi12-RA | 53..888 | 852..17 | 4155 | 99.8 | Minus |
CG13376-PA | 582 | CG13376-RA | 196..257 | 226..165 | 135 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi12-RA | 1755 | CG1154-RA | 211..1064 | 869..17 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6278741..6279183 | 869..428 | 2150 | 99.5 | Minus |
3R | 32079331 | 3R | 6281390..6281804 | 431..17 | 2075 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 10758..10790 | 512..544 | 111 | 81.8 | Plus |
BS16352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:23 Download gff for
BS16352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1154-PA | 36..888 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:20 Download gff for
BS16352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 212..1064 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:03 Download gff for
BS16352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 212..1064 | 17..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:03 Download gff for
BS16352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6278742..6279181 | 430..868 | 99 | -> | Minus |
3R | 6281392..6281804 | 17..429 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:20 Download gff for
BS16352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2104464..2104903 | 430..868 | 99 | -> | Minus |
arm_3R | 2107114..2107526 | 17..429 | 100 | | Minus |
BS16352.5prime Sequence
822 bp (750 high quality bases) assembled on 2007-05-15
> BS16352.5prime
GAAGTTATCATTCGACATGATATTCAAGCAGTGGCCCTGGCAGGCCCTCA
TCAGCCTACTCTCCGTGTTGTTCCTCGCCAGCAGTTGTGGGGCGGCCACC
GAGCAGCTGGGCAGCCCGCCCGGTCCCAGCCCATCCCAGAGCGCCGGGGC
ACGGACCCTCCTCAGGGTCTACGACGAGTGCACCCGCGCCGAGGCCGGAT
TCGTGCCATGTCTGAAAAAGAAGGCCATATCCTTTATCGACCGCCTGGCC
CCCATCGACGCCATCAACGTGGCCGAGGGCATCAAGCTGGTGCGCCTGGA
AACAGCTCCCCGTCCGCCTGCCACGAGCGAGAACGAGCTGGAGTCCTCGC
TGCCCCGATCCGGCAGCGACCGAGATGCCAAGCTCACCAACATGCTGATC
GAGCGTCTCAGCTACTTCTTCAACGGTCACTCCCTGCAGGTCAGCTTCCC
CAAGCTCACATCCGATGAGATTGGACGCGGACTAGAGGAAGGTCGTGGTA
AAATGAAGAAGATGATGGGCATGATGATGATGGGCATGGCCATGAAGATG
ATGGGCATGATTCCGATTGCCATGGGTGCGCTCTACATCCTGGCAGGCAA
GGCACTGATTATCTCGAAGATCGCCCTGCTCCTAGCGGGCATCATCGGGC
TGAAGAAGCTGATGTCCGGCAAGTCGTCAGGCGGCAGTTCTGGCTGGTCC
TCCGGAGGCGGCGGAGGAGGCGGTGGCTGGTCATCCGGAGGCGGCGGTGG
AGGAGGCGGTGGCTGGGACCGACGATCCCTGACCGAGGCCCAGGAGCTGG
CCTACCGAGCCCACCACCAGGA
BS16352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1154-PA | 888 | Osi12-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
CG13376-PA | 582 | CG13376-RA | 196..257 | 695..756 | 135 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi12-RA | 1755 | CG1154-RA | 177..982 | 17..822 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6278707..6279183 | 17..493 | 2385 | 100 | Plus |
3R | 32079331 | 3R | 6281390..6281722 | 490..822 | 1665 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 21:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 10758..10790 | 409..377 | 111 | 81.8 | Minus |
BS16352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:20 Download gff for
BS16352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1154-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:35 Download gff for
BS16352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 175..981 | 14..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:04 Download gff for
BS16352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi12-RA | 175..981 | 14..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:04 Download gff for
BS16352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6278705..6279181 | 14..491 | 99 | -> | Plus |
3R | 6281392..6281721 | 492..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:35 Download gff for
BS16352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2104427..2104903 | 14..491 | 99 | -> | Plus |
arm_3R | 2107114..2107443 | 492..821 | 100 | | Plus |
BS16352.pep Sequence
Translation from 16 to 903
> BS16352.pep
MIFKQWPWQALISLLSVLFLASSCGAATEQLGSPPGPSPSQSAGARTLLR
VYDECTRAEAGFVPCLKKKAISFIDRLAPIDAINVAEGIKLVRLETAPRP
PATSENELESSLPRSGSDRDAKLTNMLIERLSYFFNGHSLQVSFPKLTSD
EIGRGLEEGRGKMKKMMGMMMMGMAMKMMGMIPIAMGALYILAGKALIIS
KIALLLAGIIGLKKLMSGKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGW
DRRSLTEAQELAYRAHHQEQVAHAQSRPQLQHLHPKAAAPQVTKS*
BS16352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi12-PA | 295 | CG1154-PA | 1..295 | 1..295 | 1515 | 100 | Plus |
Osi14-PA | 268 | CG1155-PA | 3..268 | 11..269 | 286 | 28.5 | Plus |
Osi9-PA | 233 | CG15592-PA | 29..194 | 49..219 | 276 | 38.5 | Plus |
Osi8-PA | 274 | CG15591-PA | 63..269 | 50..247 | 268 | 34 | Plus |
Osi7-PA | 288 | CG1153-PA | 43..287 | 51..270 | 259 | 32.3 | Plus |