Clone Sequence Records
BS16354.3prime Sequence
813 bp (740 high quality bases) assembled on 2007-05-15
> BS16354.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGCCACCTGGCTGTCCAGAACGGGT
GTGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATG
GTTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACA
CAGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATG
CGGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTT
CTGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGC
CGAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATG
TCCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGC
ACGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGG
GCACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGG
GAGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAAC
GCCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAA
TGGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGC
TTGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAA
GTCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACAT
CGATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCA
GCTACGGTGCCCT
BS16354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 632..1428 | 813..17 | 3985 | 100 | Minus |
CG6476-PC | 1404 | Su(var)3-9-RC | 608..1404 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 743..1541 | 813..15 | 3995 | 100 | Minus |
eIF-2gamma-RC | 1886 | CG43665-RC | 707..1505 | 813..15 | 3995 | 100 | Minus |
eIF-2gamma-RB | 1922 | CG43665-RB | 743..1541 | 813..15 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259230 | 93..813 | 3605 | 100 | Plus |
3R | 32079331 | 3R | 15258365..15258443 | 15..93 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:15:10 has no hits.
BS16354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:40 Download gff for
BS16354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 608..1404 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:45 Download gff for
BS16354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 743..1546 | 6..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:42 Download gff for
BS16354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 743..1546 | 6..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:42 Download gff for
BS16354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258360..15258442 | 6..92 | 95 | <- | Plus |
3R | 15258510..15259230 | 93..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:45 Download gff for
BS16354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084082..11084164 | 6..92 | 95 | <- | Plus |
arm_3R | 11084232..11084952 | 93..813 | 100 | | Plus |
BS16354.5prime Sequence
841 bp (803 high quality bases) assembled on 2007-05-15
> BS16354.5prime
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTG
BS16354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PC | 1404 | Su(var)3-9-RC | 1..825 | 17..841 | 4125 | 100 | Plus |
CG6476-PB | 1428 | Su(var)3-9-RB | 66..849 | 58..841 | 3920 | 100 | Plus |
CG6476-PA | 1908 | Su(var)3-9-RA | 66..241 | 58..233 | 880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1886 | CG43665-RC | 98..924 | 15..841 | 4135 | 100 | Plus |
eIF-2gamma-RD | 2062 | CG43665-RD | 177..960 | 58..841 | 3920 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 177..960 | 58..841 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15259013..15259388 | 841..466 | 1865 | 99.7 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 471..233 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 235..58 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15262796..15262840 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:14 has no hits.
BS16354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:41 Download gff for
BS16354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:04 Download gff for
BS16354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 91..924 | 6..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:18 Download gff for
BS16354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 91..924 | 6..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:18 Download gff for
BS16354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15259013..15259383 | 471..841 | 100 | <- | Minus |
3R | 15259450..15259686 | 234..470 | 100 | <- | Minus |
3R | 15262547..15262721 | 59..233 | 100 | <- | Minus |
3R | 15262797..15262845 | 6..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:04 Download gff for
BS16354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084735..11085105 | 471..841 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 234..470 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 59..233 | 100 | <- | Minus |
arm_3R | 11088519..11088567 | 6..58 | 92 | | Minus |
BS16354.complete Sequence
1436 bp assembled on 2007-05-07
GenBank Submission: FJ638127
> BS16354.complete
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTG
CTGAAGGTAGGCCAAGAGATCGAGGTGCGTCCGGGCGTTGTGACCAAGGA
TAGCGATGGCAACATCACCTGCCGTCCAATCTTCTCCCGTATCGTCTCGC
TCTTCGCCGAACAGAATGAGCTGCAGTACGCCGTGCCCGGCGGTCTGATT
GGTGTGGGCACCAAGATCGATCCTACGCTGTGCCGTGCCGATCGTTTGGT
CGGTCAGGTGCTAGGCGCCGTTGGCCAGCTGCCGGACATCTACCAGGAGC
TGGAAATCTCGTATTACCTGCTGCGTCGCCTTCTCGGCGTCCGTACCGAT
GGTGACAAGAAGGGAGCGCGCGTTGAGAAGCTGCAGAAGAACGAAATCCT
GTTGGTTAATATCGGATCCCTCAGCACTGGTGGCCGCATCTCGGCCACCA
AAGGTGATTTGGCCAAGATCGTTCTTACGACGCCTGTGTGCACGGAGAAG
GGCGAGAAGATTGCACTCAGCAGACGTGTGGAGAACCATTGGCGTTTGAT
TGGCTGGGGTCAGATCTTCGGAGGCAAGACAATCACACCCGTTCTGGACA
GCCAGGTGGCAAAGAAGTAGAAGCTTTCTAGACCAT
BS16354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1404 | CG43665-PC | 1..1404 | 17..1420 | 7020 | 100 | Plus |
eIF-2gamma-RD | 1428 | CG43665-PD | 66..1428 | 58..1420 | 6815 | 100 | Plus |
eIF-2gamma-RB | 1428 | CG43665-PB | 66..1428 | 58..1420 | 6815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1886 | CG43665-RC | 98..1505 | 15..1422 | 7040 | 100 | Plus |
eIF-2gamma-RD | 2062 | CG43665-RD | 177..1541 | 58..1422 | 6825 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 177..1541 | 58..1422 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259388 | 1344..466 | 4380 | 99.9 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 471..233 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 235..58 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15258365..15258443 | 1422..1344 | 395 | 100 | Minus |
3R | 32079331 | 3R | 15262796..15262840 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:26:43 has no hits.
BS16354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:44 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 1..1404 | 17..1420 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:07 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 91..1510 | 6..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:52 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 100..1503 | 17..1420 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:44 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 91..1510 | 6..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:52 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 100..1503 | 17..1420 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:52 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15259450..15259686 | 234..470 | 100 | <- | Minus |
3R | 15262547..15262721 | 59..233 | 100 | <- | Minus |
3R | 15262797..15262838 | 17..58 | 100 | | Minus |
3R | 15258367..15258442 | 1345..1420 | 100 | <- | Minus |
3R | 15258510..15259383 | 471..1344 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:52 Download gff for
BS16354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084089..11084164 | 1345..1420 | 100 | <- | Minus |
arm_3R | 11084232..11085105 | 471..1344 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 234..470 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 59..233 | 100 | <- | Minus |
arm_3R | 11088519..11088560 | 17..58 | 100 | | Minus |
BS16354.pep Sequence
Translation from 16 to 1419
> BS16354.pep
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKK*
BS16354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-PC | 467 | CG43665-PC | 1..467 | 1..467 | 2380 | 100 | Plus |
eIF-2gamma-PD | 475 | CG43665-PD | 23..475 | 15..467 | 2310 | 100 | Plus |
eIF-2gamma-PB | 475 | CG43665-PB | 23..475 | 15..467 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 23..89 | 15..81 | 284 | 89.6 | Plus |
EfSec-PA | 511 | CG9841-PA | 6..230 | 34..287 | 201 | 27.8 | Plus |