Clone BS16354 Report

Search the DGRC for BS16354

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:54
Vector:pDNR-Dual
Associated Gene/TranscripteIF-2gamma-RC
Protein status:BS16354.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16354.3prime Sequence

813 bp (740 high quality bases) assembled on 2007-05-15

> BS16354.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTGCCACCTGGCTGTCCAGAACGGGT
GTGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATG
GTTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACA
CAGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATG
CGGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTT
CTGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGC
CGAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATG
TCCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGC
ACGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGG
GCACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGG
GAGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAAC
GCCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAA
TGGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGC
TTGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAA
GTCACGCGGCGGCACTGGTATCTTGTTCACAATGTACTCGCAGAGCACAT
CGATGTTGTACTTAAGCTGGGCCGAGATCGGAATGATCGGAGCGCCCTCA
GCTACGGTGCCCT

BS16354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 632..1428 813..17 3985 100 Minus
CG6476-PC 1404 Su(var)3-9-RC 608..1404 813..17 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 743..1541 813..15 3995 100 Minus
eIF-2gamma-RC 1886 CG43665-RC 707..1505 813..15 3995 100 Minus
eIF-2gamma-RB 1922 CG43665-RB 743..1541 813..15 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259230 93..813 3605 100 Plus
3R 32079331 3R 15258365..15258443 15..93 395 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:15:10 has no hits.

BS16354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:40 Download gff for BS16354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 608..1404 17..813 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:45 Download gff for BS16354.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 743..1546 6..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:42 Download gff for BS16354.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 743..1546 6..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:42 Download gff for BS16354.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15258360..15258442 6..92 95 <- Plus
3R 15258510..15259230 93..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:45 Download gff for BS16354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084082..11084164 6..92 95 <- Plus
arm_3R 11084232..11084952 93..813 100   Plus

BS16354.5prime Sequence

841 bp (803 high quality bases) assembled on 2007-05-15

> BS16354.5prime
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTG

BS16354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PC 1404 Su(var)3-9-RC 1..825 17..841 4125 100 Plus
CG6476-PB 1428 Su(var)3-9-RB 66..849 58..841 3920 100 Plus
CG6476-PA 1908 Su(var)3-9-RA 66..241 58..233 880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1886 CG43665-RC 98..924 15..841 4135 100 Plus
eIF-2gamma-RD 2062 CG43665-RD 177..960 58..841 3920 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 177..960 58..841 3920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15259013..15259388 841..466 1865 99.7 Minus
3R 32079331 3R 15259449..15259687 471..233 1195 100 Minus
3R 32079331 3R 15262545..15262722 235..58 890 100 Minus
3R 32079331 3R 15262796..15262840 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:03:14 has no hits.

BS16354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:41 Download gff for BS16354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:04 Download gff for BS16354.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 91..924 6..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:18 Download gff for BS16354.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 91..924 6..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:18 Download gff for BS16354.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15259013..15259383 471..841 100 <- Minus
3R 15259450..15259686 234..470 100 <- Minus
3R 15262547..15262721 59..233 100 <- Minus
3R 15262797..15262845 6..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:04 Download gff for BS16354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084735..11085105 471..841 100 <- Minus
arm_3R 11085172..11085408 234..470 100 <- Minus
arm_3R 11088269..11088443 59..233 100 <- Minus
arm_3R 11088519..11088567 6..58 92   Minus

BS16354.complete Sequence

1436 bp assembled on 2007-05-07

GenBank Submission: FJ638127

> BS16354.complete
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTG
CTGAAGGTAGGCCAAGAGATCGAGGTGCGTCCGGGCGTTGTGACCAAGGA
TAGCGATGGCAACATCACCTGCCGTCCAATCTTCTCCCGTATCGTCTCGC
TCTTCGCCGAACAGAATGAGCTGCAGTACGCCGTGCCCGGCGGTCTGATT
GGTGTGGGCACCAAGATCGATCCTACGCTGTGCCGTGCCGATCGTTTGGT
CGGTCAGGTGCTAGGCGCCGTTGGCCAGCTGCCGGACATCTACCAGGAGC
TGGAAATCTCGTATTACCTGCTGCGTCGCCTTCTCGGCGTCCGTACCGAT
GGTGACAAGAAGGGAGCGCGCGTTGAGAAGCTGCAGAAGAACGAAATCCT
GTTGGTTAATATCGGATCCCTCAGCACTGGTGGCCGCATCTCGGCCACCA
AAGGTGATTTGGCCAAGATCGTTCTTACGACGCCTGTGTGCACGGAGAAG
GGCGAGAAGATTGCACTCAGCAGACGTGTGGAGAACCATTGGCGTTTGAT
TGGCTGGGGTCAGATCTTCGGAGGCAAGACAATCACACCCGTTCTGGACA
GCCAGGTGGCAAAGAAGTAGAAGCTTTCTAGACCAT

BS16354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1404 CG43665-PC 1..1404 17..1420 7020 100 Plus
eIF-2gamma-RD 1428 CG43665-PD 66..1428 58..1420 6815 100 Plus
eIF-2gamma-RB 1428 CG43665-PB 66..1428 58..1420 6815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1886 CG43665-RC 98..1505 15..1422 7040 100 Plus
eIF-2gamma-RD 2062 CG43665-RD 177..1541 58..1422 6825 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 177..1541 58..1422 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1344..466 4380 99.9 Minus
3R 32079331 3R 15259449..15259687 471..233 1195 100 Minus
3R 32079331 3R 15262545..15262722 235..58 890 100 Minus
3R 32079331 3R 15258365..15258443 1422..1344 395 100 Minus
3R 32079331 3R 15262796..15262840 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:26:43 has no hits.

BS16354.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:44 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1404 17..1420 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:07 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 91..1510 6..1431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:52 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 100..1503 17..1420 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:44 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 91..1510 6..1431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:52 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 100..1503 17..1420 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:52 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15259450..15259686 234..470 100 <- Minus
3R 15262547..15262721 59..233 100 <- Minus
3R 15262797..15262838 17..58 100   Minus
3R 15258367..15258442 1345..1420 100 <- Minus
3R 15258510..15259383 471..1344 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:52 Download gff for BS16354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084089..11084164 1345..1420 100 <- Minus
arm_3R 11084232..11085105 471..1344 100 <- Minus
arm_3R 11085172..11085408 234..470 100 <- Minus
arm_3R 11088269..11088443 59..233 100 <- Minus
arm_3R 11088519..11088560 17..58 100   Minus

BS16354.pep Sequence

Translation from 16 to 1419

> BS16354.pep
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKK*

BS16354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PC 467 CG43665-PC 1..467 1..467 2380 100 Plus
eIF-2gamma-PD 475 CG43665-PD 23..475 15..467 2310 100 Plus
eIF-2gamma-PB 475 CG43665-PB 23..475 15..467 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 23..89 15..81 284 89.6 Plus
EfSec-PA 511 CG9841-PA 6..230 34..287 201 27.8 Plus