Clone Sequence Records
BS16356.3prime Sequence
564 bp (564 high quality bases) assembled on 2007-05-15
> BS16356.3prime
ATGGTCTAGAAAGCTTTCAGTCAATGACCACACGGGTAAGGAGTATGCCA
CGCTTGCTCAACCATAGCCCGAATCCAGCTCCCAGCAGCAGGGACAGGAC
GTTGGTCACCAGCAGCGAGTACAGAATTTCGCGGGAGAACAACGAGTTGG
AGCCCAGTCGCTTCAAACGGATGGAGTAGCCTGTGTTAGTCTTCTTTTTC
TCGCCCTCGTCGCCGGCATCCCGACTTGAATCCTCAATGTTCCAGCTACT
GGGTGGCTGATTCCAGTTCTTCAGCCAATCTTCATTGCCTGCATTCTGTT
TGTCTCCTCCCTTGGTCCAGTAGTTGATGTACACGTTTCTGAGCTCATCA
TCCGGACAGAGCTCCGACTGGGGACTGTTCGGTGGACTCTTGGGGCTATC
ACGGGGCGTATCACGACGGGAGCTGGCCAAGGAGACGACACGGCTCGACT
GGTTCGACTCGCGCTGGGCCTCGCGCAGAAGTCTCAGGTACTCCTCGCCA
TTGTTGAATGGCAACGGAGTGATTCTGTCGGGGCTCTTGATGCCAGCCAT
GTCGACTGATAACT
BS16356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 606 | CG5059-RA | 73..606 | 550..17 | 2670 | 100 | Minus |
| CG5059-PC | 534 | CG5059-RC | 1..534 | 550..17 | 2670 | 100 | Minus |
| CG5059-PB | 582 | CG5059-RB | 49..582 | 550..17 | 2670 | 100 | Minus |
| CG5059-PD | 534 | CG5059-RD | 1..534 | 550..17 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..812 | 550..14 | 2685 | 100 | Minus |
| CG5059-RD | 1477 | CG5059-RD | 210..746 | 550..14 | 2685 | 100 | Minus |
| CG5059-RB | 1344 | CG5059-RB | 77..613 | 550..14 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 303..550 | 1210 | 99.2 | Plus |
| 3L | 28110227 | 3L | 20515443..20515626 | 68..251 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 20515725..20515788 | 249..312 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 20515329..20515384 | 14..69 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:32:31 has no hits.
BS16356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:37 Download gff for
BS16356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-PD | 1..534 | 17..550 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:51 Download gff for
BS16356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 14..554 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:22 Download gff for
BS16356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 14..554 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:22 Download gff for
BS16356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515861..20516102 | 311..554 | 99 | | Plus |
| 3L | 20515329..20515383 | 14..68 | 100 | <- | Plus |
| 3L | 20515444..20515623 | 69..248 | 100 | <- | Plus |
| 3L | 20515725..20515786 | 249..310 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:51 Download gff for
BS16356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 14..68 | 100 | <- | Plus |
| arm_3L | 20508544..20508723 | 69..248 | 100 | <- | Plus |
| arm_3L | 20508825..20508886 | 249..310 | 100 | <- | Plus |
| arm_3L | 20508961..20509202 | 311..554 | 99 | | Plus |
BS16356.5prime Sequence
564 bp (564 high quality bases) assembled on 2007-05-15
> BS16356.5prime
GAAGTTATCAGTCGACATGGCTGGCATCAAGAGCCCCGACAGAATCACTC
CGTTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCC
CAGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCG
TCGTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGT
CGGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGG
ACCAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAA
CTGGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATG
CCGGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGT
TTGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTC
GCTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGC
TATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACTGA
AAGCTTTCTAGACC
BS16356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 606 | CG5059-RA | 73..606 | 17..550 | 2670 | 100 | Plus |
| CG5059-PC | 534 | CG5059-RC | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG5059-PB | 582 | CG5059-RB | 49..582 | 17..550 | 2670 | 100 | Plus |
| CG5059-PD | 534 | CG5059-RD | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..812 | 17..553 | 2685 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..746 | 17..553 | 2685 | 100 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..613 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 264..17 | 1210 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 499..316 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 318..255 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515329..20515384 | 553..498 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:45:50 has no hits.
BS16356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:38 Download gff for
BS16356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-PD | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:49 Download gff for
BS16356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 13..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:45:05 Download gff for
BS16356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 13..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:45:05 Download gff for
BS16356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515329..20515383 | 499..553 | 100 | <- | Minus |
| 3L | 20515444..20515623 | 319..498 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 257..318 | 100 | <- | Minus |
| 3L | 20515861..20516102 | 13..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:49 Download gff for
BS16356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 499..553 | 100 | <- | Minus |
| arm_3L | 20508544..20508723 | 319..498 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 257..318 | 100 | <- | Minus |
| arm_3L | 20508961..20509202 | 13..256 | 99 | | Minus |
BS16356.complete Sequence
566 bp assembled on 2007-05-07
GenBank Submission: FJ638128
> BS16356.complete
GAAGTTATCAGTCGACATGGCTGGCATCAAGAGCCCCGACAGAATCACTC
CGTTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCC
CAGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCG
TCGTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGT
CGGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGG
ACCAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAA
CTGGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATG
CCGGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGT
TTGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTC
GCTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGC
TATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACTGA
AAGCTTTCTAGACCAT
BS16356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 534 | CG5059-PE | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG5059-RD | 534 | CG5059-PD | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG5059-RB | 582 | CG5059-PB | 49..582 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..812 | 17..553 | 2685 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..746 | 17..553 | 2685 | 100 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..613 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 264..17 | 1210 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 499..316 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 318..255 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515329..20515384 | 553..498 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:03:08 has no hits.
BS16356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:45 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 47..582 | 13..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:08 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 496..1034 | 13..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:30 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 77..609 | 17..549 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:46 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 64..602 | 13..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:35 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 77..609 | 17..549 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:35 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515444..20515623 | 319..498 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 257..318 | 100 | <- | Minus |
| 3L | 20515861..20516100 | 17..256 | 100 | | Minus |
| 3L | 20515333..20515383 | 499..549 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:30 Download gff for
BS16356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508544..20508723 | 319..498 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 257..318 | 100 | <- | Minus |
| arm_3L | 20508433..20508483 | 499..549 | 100 | <- | Minus |
| arm_3L | 20508961..20509200 | 17..256 | 100 | | Minus |
BS16356.pep Sequence
Translation from 16 to 549
> BS16356.pep
MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR
DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP
SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN
VLSLLLGAGFGLWLSKRGILLTRVVID*
BS16356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PE | 177 | CG5059-PE | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PD | 177 | CG5059-PD | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PC | 177 | CG5059-PC | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PB | 193 | CG5059-PB | 17..193 | 1..177 | 927 | 100 | Plus |
| CG5059-PA | 201 | CG5059-PA | 25..201 | 1..177 | 927 | 100 | Plus |
