Clone Sequence Records
BS16357.3prime Sequence
865 bp (841 high quality bases) assembled on 2007-05-15
> BS16357.3prime
ATGGTCTAGAAAGCTTCTACAGGGTCTCCAGGCCGGGCAGCGGGAATTTC
CTGCTGAACTGGGCCACATTCTTGCGGATCTCGTCCACCTGGGCCTTGAG
CTCCACATTCTCGGCCAGCGTCTTGTGGTAATCGGTTATCTTGGGACTGC
CGGCCAGCTTGGCTGCCTGGACGCCAACCTTTAGGGCAGCATCGATGAAG
GCCACCACCTGCTCGATGTCCTGCTCGGCAAGGCCGCGAGTGGTCAGGGC
CGGTGTGCCCAGCCGGATGCCGGAGGGATTCATGGCGGACTTGTCGCCGG
GCACAGTGTTCTTGTTGCACGCGATGCCCACCTCCTCGAGGATGTACTCG
GCCTTGGCGCCGGTCAGGCCAGCCTTACGCACATCGACCAGCACCAAATG
GACGTCGGTGCCGCCGGTGGCCACCTGATAGCCTCGCGAAATGAGGCCAT
CGCACAGGGCCTTGGCATTCTTGAGCACCTGCGTCTGGTAGGCCTTGAAT
TCGGGACTCTTGGCCTGCTTGAAGGCGGTGGCAATGCCAGCCACGGCGTT
GTTGTGCGGACCACCCTGGAGTGATGGAAACACCGCCTGGTTGATGCGCT
CCTCCAGATCGTAGAGTACCTTGTCTCCATTGGCCTTGGTGCTGCGCACG
CCCTTGCGGAAGAAGATCACGCCGGCGCGCGGACCTCGCAGTGTCTTGTG
CGTGGTGGTGGTCACAATGTCGGCCCATTCGAACGGCGATGGTATCAATC
CCGCGGCCACAATGCCCGCCACATGGGCCATGTCGGCCATCANGTAGGCG
CCCACATCATCGCAAATCTGTCGGAAACGCGCATAGTCCAGCAGACGGGA
GTAGCACGATATGCC
BS16357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 1614 | CG3011-RA | 766..1614 | 865..17 | 4226 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RC | 1592 | CG3011-RC | 614..1462 | 865..17 | 4234 | 99.9 | Minus |
| CG3011-RB | 2054 | CG3011-RB | 1076..1924 | 865..17 | 4234 | 99.9 | Minus |
| CG3011-RA | 2001 | CG3011-RA | 1023..1871 | 865..17 | 4234 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913197..5914045 | 17..865 | 4234 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:58:52 has no hits.
BS16357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:45 Download gff for
BS16357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-PA | 766..1614 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:33 Download gff for
BS16357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1023..1880 | 8..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:18 Download gff for
BS16357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1023..1880 | 8..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:18 Download gff for
BS16357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5913188..5914045 | 8..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:33 Download gff for
BS16357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807221..5808078 | 8..865 | 99 | | Plus |
BS16357.5prime Sequence
922 bp (740 high quality bases) assembled on 2007-05-15
> BS16357.5prime
GAAGTTATCAGTCGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGC
TTCGGTTTTGCCTTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTT
AACTTCGAGACTGGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAA
AAAACAACCATCACCAACGCCATTCTTACCGGCGATCAGACGATATTCGG
ACTCCAAGCAGAGCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAA
ACCCCGCTGGCACAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGA
GAAGGAGCGCCAGCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCA
CCTCGGTGGCGGTTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTAC
TCCGAGGGATATCCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGA
CCGCATAGAGCTGCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGG
ACGATGAGAAGTGGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCC
AATCTGGCTGTCTACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGG
CCTGGATCTGCCCGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCA
CCAAGAAGATATCGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAA
GTGAACCCGGAGACGGGCATCATCGATTACGATAAGTTGGCGGAAGCGGC
GAAGAATTTCCGGCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCC
GTCTGCTGGACTATGCGCGTTTCCGACAGATTTGCGATGATGTGGGCGCC
TACCTGATGGCCGACATGGCCCATGTGGCGGGCATTGTGGCCGCGGGATT
GATACCATCGCCGTTCGAATGG
BS16357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 1614 | CG3011-RA | 1..906 | 17..922 | 4505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..1163 | 14..922 | 4530 | 99.9 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..754 | 169..922 | 3755 | 99.9 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..1216 | 222..922 | 3490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913905..5914405 | 922..422 | 2490 | 99.8 | Minus |
| X | 23542271 | X | 5916263..5916472 | 223..14 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 425..222 | 1020 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4955..4981 | 407..381 | 108 | 88.9 | Minus |
BS16357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:48 Download gff for
BS16357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:55 Download gff for
BS16357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..1163 | 5..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:57 Download gff for
BS16357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..1163 | 5..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:57 Download gff for
BS16357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5916263..5916481 | 3..223 | 98 | | Minus |
| X | 5913905..5914403 | 424..922 | 99 | <- | Minus |
| X | 5914581..5914780 | 224..423 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:55 Download gff for
BS16357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807938..5808436 | 424..922 | 99 | <- | Minus |
| arm_X | 5808614..5808813 | 224..423 | 100 | <- | Minus |
| arm_X | 5810296..5810514 | 3..223 | 98 | | Minus |
BS16357.complete Sequence
1646 bp assembled on 2007-05-07
GenBank Submission: FJ638129
> BS16357.complete
GAAGTTATCAGTCGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGC
TTCGGTTTTGCCTTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTT
AACTTCGAGACTGGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAA
AAAACAACCATCACCAACGCCATTCTTACCGGCGATCAGACGATATTCGG
ACTCCAAGCAGAGCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAA
ACCCCGCTGGCACAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGA
GAAGGAGCGCCAGCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCA
CCTCGGTGGCGGTTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTAC
TCCGAGGGATATCCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGA
CCGCATAGAGCTGCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGG
ACGATGAGAAGTGGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCC
AATCTGGCTGTCTACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGG
CCTGGATCTGCCCGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCA
CCAAGAAGATATCGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAA
GTGAACCCGGAGACGGGCATCATCGATTACGATAAGTTGGCGGAAGCGGC
GAAGAATTTCCGGCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCC
GTCTGCTGGACTATGCGCGTTTCCGACAGATTTGCGATGATGTGGGCGCC
TACCTGATGGCCGACATGGCCCATGTGGCGGGCATTGTGGCCGCGGGATT
GATACCATCGCCGTTCGAATGGGCCGACATTGTGACCACCACCACGCACA
AGACACTGCGAGGTCCGCGCGCCGGCGTGATCTTCTTCCGCAAGGGCGTG
CGCAGCACCAAGGCCAATGGAGACAAGGTACTCTACGATCTGGAGGAGCG
CATCAACCAGGCGGTGTTTCCATCACTCCAGGGTGGTCCGCACAACAACG
CCGTGGCTGGCATTGCCACCGCCTTCAAGCAGGCCAAGAGTCCCGAATTC
AAGGCCTACCAGACGCAGGTGCTCAAGAATGCCAAGGCCCTGTGCGATGG
CCTCATTTCGCGAGGCTATCAGGTGGCCACCGGCGGCACCGACGTCCATT
TGGTGCTGGTCGATGTGCGTAAGGCTGGCCTGACCGGCGCCAAGGCCGAG
TACATCCTCGAGGAGGTGGGCATCGCGTGCAACAAGAACACTGTGCCCGG
CGACAAGTCCGCCATGAATCCCTCCGGCATCCGGCTGGGCACACCGGCCC
TGACCACTCGCGGCCTTGCCGAGCAGGACATCGAGCAGGTGGTGGCCTTC
ATCGATGCTGCCCTAAAGGTTGGCGTCCAGGCAGCCAAGCTGGCCGGCAG
TCCCAAGATAACCGATTACCACAAGACGCTGGCCGAGAATGTGGAGCTCA
AGGCCCAGGTGGACGAGATCCGCAAGAATGTGGCCCAGTTCAGCAGGAAA
TTCCCGCTGCCCGGCCTGGAGACCCTGTAGAAGCTTTCTAGACCAT
BS16357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 1614 | CG3011-PA | 1..1614 | 17..1630 | 8055 | 99.9 | Plus |
| CG3011-RC | 1404 | CG3011-PC | 1..1404 | 227..1630 | 7005 | 99.9 | Plus |
| CG3011-RB | 1404 | CG3011-PB | 1..1404 | 227..1630 | 7005 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..1871 | 14..1630 | 8070 | 99.9 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..1462 | 169..1630 | 7295 | 99.9 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..1924 | 222..1630 | 7030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913197..5914405 | 1630..422 | 6030 | 99.9 | Minus |
| X | 23542271 | X | 5916263..5916472 | 223..14 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 425..222 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:46:34 has no hits.
BS16357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:46 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1..1614 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:10 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 244..1876 | 5..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:19 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 258..1871 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:47 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 244..1876 | 5..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:42 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 258..1871 | 17..1630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:42 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5916263..5916469 | 17..223 | 100 | | Minus |
| X | 5914581..5914780 | 224..423 | 100 | <- | Minus |
| X | 5913197..5914403 | 424..1630 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:19 Download gff for
BS16357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5808614..5808813 | 224..423 | 100 | <- | Minus |
| arm_X | 5810296..5810502 | 17..223 | 100 | | Minus |
| arm_X | 5807230..5808436 | 424..1630 | 99 | <- | Minus |
BS16357.pep Sequence
Translation from 16 to 1629
> BS16357.pep
MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP
TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR
EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL
AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD
GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP
QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF
EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV
FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG
YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM
NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD
YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETL*
BS16357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 537 | CG3011-PA | 1..537 | 1..537 | 2756 | 100 | Plus |
| CG3011-PC | 467 | CG3011-PC | 1..467 | 71..537 | 2402 | 100 | Plus |
| CG3011-PB | 467 | CG3011-PB | 1..467 | 71..537 | 2402 | 100 | Plus |
