Clone Sequence Records
BS16359.3prime Sequence
916 bp (795 high quality bases) assembled on 2007-05-15
> BS16359.3prime
ATGGTCTAGAAAGCTTTCACAGCGTTGGCATGTTGCGCCGATGTCCGTTG
CCGGAACCGCTGGACTCCGCCTCCTGCTGTGCCTTCTGTTTGGCACGGCG
AGCCTTTTGGCGTGTGTGCTCGATCTGGAAGTCCTCTACGCGCAGATTCA
GTCGCATCATATTGTTGATGATGAACTCCTCCTCCACGATATGCTCCTCG
GGTGAACGCAGCACTGCCAACGTCTCGCAGAGACCAGTACACGTCTTTCG
CACCTTGTGTCGGCTTAGTGAAGCCCCAATAATGACCAGAGCCACCTTGA
AGATCACGCGGATGCCTTCGGCTAGAAAGCAATCCCATACTCGCAGCAGT
GTCTCCCAGGGCAGAGTCCGCGTCATCGCGCACAGGAACCAGTCGGTCAT
GTAGAGCAGCGGCTCCACTTTGTGCTTCTGCAGGTGCCGGTACACGGGCG
GGCATGTCTTCTTCAGCAGACCCTCCAGGATGCCAGCATCGTTCTGGATC
ACCTCCAAACCGGGTATGAAATAGTCCTGCAGGTATACATCGCACACGCT
GACAAACACCCAGAAGGCGTCCTCCGCGGGCAGGTGCATCAATAGGAACG
CTGCTATTGGTGCTTGCGCCTGGCAGAAGCCCACCTTGGGATTGTATATC
GAGTAGGCCTTTAGCACATTAAAGAGCTCGATTTGTCCGACCTTCTGCTC
GTCGAGAAACATTTCATGGAACGGGAACTGGCGATGCTTATCCTTCTTGA
TCTCTTCGATGGTCGTCGGGTTACCGGGCTTTTCCAGAAGCTCGTTGTGA
ACGTTGGGGTTCTTCTTCTTTAGCAGATACGCCCCCGATAAATAGAACCA
GGCCTTGGGTCGCACCGACTTGGGTATGCCCTTGCGACAGCGATCTCGGA
TCTTTTTGTAGTTTTT
BS16359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5344-PA | 1092 | wkd-RA | 193..1092 | 916..17 | 4450 | 99.7 | Minus |
CG5344-PB | 1092 | wkd-RB | 193..1092 | 916..17 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 558..1457 | 916..17 | 4470 | 99.8 | Minus |
wkd-RA | 2054 | CG5344-RA | 493..1392 | 916..17 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11584124..11584643 | 536..17 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 11583699..11584065 | 903..537 | 1805 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:48 has no hits.
BS16359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:36 Download gff for
BS16359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5344-PB | 193..1092 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:35 Download gff for
BS16359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 493..1392 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:18 Download gff for
BS16359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 493..1392 | 17..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:18 Download gff for
BS16359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583701..11584065 | 537..901 | 99 | -> | Minus |
3R | 11584124..11584643 | 17..536 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:35 Download gff for
BS16359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409423..7409787 | 537..901 | 99 | -> | Minus |
arm_3R | 7409846..7410365 | 17..536 | 100 | | Minus |
BS16359.5prime Sequence
858 bp (805 high quality bases) assembled on 2007-05-15
> BS16359.5prime
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGNGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAAGCATCCGCGTGATCTTTCAGGTGGCTCTGGTCATTATTGGG
GCTTCACT
BS16359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5344-PA | 1092 | wkd-RA | 1..842 | 17..858 | 4091 | 99.4 | Plus |
CG5344-PB | 1092 | wkd-RB | 1..842 | 17..858 | 4091 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 366..1207 | 17..858 | 4139 | 99.4 | Plus |
wkd-RA | 2054 | CG5344-RA | 301..1142 | 17..858 | 4139 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11583699..11584065 | 222..588 | 1820 | 99.7 | Plus |
3R | 32079331 | 3R | 11584124..11584393 | 589..858 | 1294 | 98.5 | Plus |
3R | 32079331 | 3R | 11583350..11583556 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:07:53 has no hits.
BS16359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:32 Download gff for
BS16359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5344-PB | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:37 Download gff for
BS16359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 299..1142 | 13..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:06 Download gff for
BS16359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 299..1142 | 13..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:06 Download gff for
BS16359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583348..11583556 | 13..223 | 99 | -> | Plus |
3R | 11583701..11584065 | 224..588 | 99 | -> | Plus |
3R | 11584124..11584393 | 589..858 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:37 Download gff for
BS16359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409070..7409278 | 13..223 | 99 | -> | Plus |
arm_3R | 7409423..7409787 | 224..588 | 99 | -> | Plus |
arm_3R | 7409846..7410115 | 589..858 | 98 | | Plus |
BS16359.complete Sequence
1124 bp assembled on 2007-05-07
GenBank Submission: FJ638130
> BS16359.complete
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGGGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAGGCATCCGCGTGATCTTCAAGGTGGCTCTGGTCATTATTGGG
GCTTCACTAAGCCGACACAAGGTGCGAAAGACGTGTACTGGTCTCTGCGA
GACGTTGGCAGTGCTGCGTTCACCCGAGGAGCATATCGTGGAGGAGGAGT
TCATCATCAACAATATGATGCGACTGAATCTGCGCGTAGAGGACTTCCAG
ATCGAGCACACACGCCAAAAGGCTCGCCGTGCCAAACAGAAGGCACAGCA
GGAGGCGGAGTCCAGCGGTTCCGGCAACGGACATCGGCGCAACATGCCAA
CGCTGTGAAAGCTTTCTAGACCAT
BS16359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 1092 | CG5344-PB | 1..1092 | 17..1108 | 5445 | 99.9 | Plus |
wkd-RA | 1092 | CG5344-PA | 1..1092 | 17..1108 | 5445 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 366..1457 | 17..1108 | 5445 | 99.9 | Plus |
wkd-RA | 2054 | CG5344-RA | 301..1392 | 17..1108 | 5445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11584124..11584643 | 589..1108 | 2600 | 100 | Plus |
3R | 32079331 | 3R | 11583699..11584065 | 222..588 | 1820 | 99.7 | Plus |
3R | 32079331 | 3R | 11583350..11583556 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:04 has no hits.
BS16359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:30 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 1..1092 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:53 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 364..1457 | 13..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:59 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 301..1391 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:31 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 364..1457 | 13..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:40 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 301..1391 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:40 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583350..11583556 | 17..223 | 100 | -> | Plus |
3R | 11583701..11584065 | 224..588 | 99 | -> | Plus |
3R | 11584124..11584642 | 589..1107 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:59 Download gff for
BS16359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409072..7409278 | 17..223 | 100 | -> | Plus |
arm_3R | 7409423..7409787 | 224..588 | 99 | -> | Plus |
arm_3R | 7409846..7410364 | 589..1107 | 100 | | Plus |
BS16359.pep Sequence
Translation from 16 to 1107
> BS16359.pep
MATAPRSLDTISLCSTVSSCPDRNGFYGGFQRTDKPKEPLSKAQIIAREK
KWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKN
PNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLK
AYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPG
LEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLP
WETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCETLAVL
RSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRAKQKAQQEAESS
GSGNGHRRNMPTL*
BS16359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-PB | 363 | CG5344-PB | 1..363 | 1..363 | 1932 | 100 | Plus |
wkd-PA | 363 | CG5344-PA | 1..363 | 1..363 | 1932 | 100 | Plus |
RN-tre-PB | 457 | CG8085-PB | 78..307 | 48..277 | 341 | 33.8 | Plus |
RN-tre-PE | 468 | CG8085-PE | 78..307 | 48..277 | 341 | 33.8 | Plus |
RN-tre-PC | 485 | CG8085-PC | 78..307 | 48..277 | 341 | 33.8 | Plus |