Clone BS16359 Report

Search the DGRC for BS16359

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:59
Vector:pDNR-Dual
Associated Gene/Transcriptwkd-RA
Protein status:BS16359.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16359.3prime Sequence

916 bp (795 high quality bases) assembled on 2007-05-15

> BS16359.3prime
ATGGTCTAGAAAGCTTTCACAGCGTTGGCATGTTGCGCCGATGTCCGTTG
CCGGAACCGCTGGACTCCGCCTCCTGCTGTGCCTTCTGTTTGGCACGGCG
AGCCTTTTGGCGTGTGTGCTCGATCTGGAAGTCCTCTACGCGCAGATTCA
GTCGCATCATATTGTTGATGATGAACTCCTCCTCCACGATATGCTCCTCG
GGTGAACGCAGCACTGCCAACGTCTCGCAGAGACCAGTACACGTCTTTCG
CACCTTGTGTCGGCTTAGTGAAGCCCCAATAATGACCAGAGCCACCTTGA
AGATCACGCGGATGCCTTCGGCTAGAAAGCAATCCCATACTCGCAGCAGT
GTCTCCCAGGGCAGAGTCCGCGTCATCGCGCACAGGAACCAGTCGGTCAT
GTAGAGCAGCGGCTCCACTTTGTGCTTCTGCAGGTGCCGGTACACGGGCG
GGCATGTCTTCTTCAGCAGACCCTCCAGGATGCCAGCATCGTTCTGGATC
ACCTCCAAACCGGGTATGAAATAGTCCTGCAGGTATACATCGCACACGCT
GACAAACACCCAGAAGGCGTCCTCCGCGGGCAGGTGCATCAATAGGAACG
CTGCTATTGGTGCTTGCGCCTGGCAGAAGCCCACCTTGGGATTGTATATC
GAGTAGGCCTTTAGCACATTAAAGAGCTCGATTTGTCCGACCTTCTGCTC
GTCGAGAAACATTTCATGGAACGGGAACTGGCGATGCTTATCCTTCTTGA
TCTCTTCGATGGTCGTCGGGTTACCGGGCTTTTCCAGAAGCTCGTTGTGA
ACGTTGGGGTTCTTCTTCTTTAGCAGATACGCCCCCGATAAATAGAACCA
GGCCTTGGGTCGCACCGACTTGGGTATGCCCTTGCGACAGCGATCTCGGA
TCTTTTTGTAGTTTTT

BS16359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5344-PA 1092 wkd-RA 193..1092 916..17 4450 99.7 Minus
CG5344-PB 1092 wkd-RB 193..1092 916..17 4450 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 558..1457 916..17 4470 99.8 Minus
wkd-RA 2054 CG5344-RA 493..1392 916..17 4470 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11584124..11584643 536..17 2600 100 Minus
3R 32079331 3R 11583699..11584065 903..537 1805 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:48 has no hits.

BS16359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:36 Download gff for BS16359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5344-PB 193..1092 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:35 Download gff for BS16359.3prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 493..1392 17..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:18 Download gff for BS16359.3prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 493..1392 17..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:18 Download gff for BS16359.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11583701..11584065 537..901 99 -> Minus
3R 11584124..11584643 17..536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:35 Download gff for BS16359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409423..7409787 537..901 99 -> Minus
arm_3R 7409846..7410365 17..536 100   Minus

BS16359.5prime Sequence

858 bp (805 high quality bases) assembled on 2007-05-15

> BS16359.5prime
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGNGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAAGCATCCGCGTGATCTTTCAGGTGGCTCTGGTCATTATTGGG
GCTTCACT

BS16359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5344-PA 1092 wkd-RA 1..842 17..858 4091 99.4 Plus
CG5344-PB 1092 wkd-RB 1..842 17..858 4091 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 366..1207 17..858 4139 99.4 Plus
wkd-RA 2054 CG5344-RA 301..1142 17..858 4139 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11583699..11584065 222..588 1820 99.7 Plus
3R 32079331 3R 11584124..11584393 589..858 1294 98.5 Plus
3R 32079331 3R 11583350..11583556 17..223 1035 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:07:53 has no hits.

BS16359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:32 Download gff for BS16359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5344-PB 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:29:37 Download gff for BS16359.5prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 299..1142 13..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:06 Download gff for BS16359.5prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 299..1142 13..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:06 Download gff for BS16359.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11583348..11583556 13..223 99 -> Plus
3R 11583701..11584065 224..588 99 -> Plus
3R 11584124..11584393 589..858 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:37 Download gff for BS16359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409070..7409278 13..223 99 -> Plus
arm_3R 7409423..7409787 224..588 99 -> Plus
arm_3R 7409846..7410115 589..858 98   Plus

BS16359.complete Sequence

1124 bp assembled on 2007-05-07

GenBank Submission: FJ638130

> BS16359.complete
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGGGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAGGCATCCGCGTGATCTTCAAGGTGGCTCTGGTCATTATTGGG
GCTTCACTAAGCCGACACAAGGTGCGAAAGACGTGTACTGGTCTCTGCGA
GACGTTGGCAGTGCTGCGTTCACCCGAGGAGCATATCGTGGAGGAGGAGT
TCATCATCAACAATATGATGCGACTGAATCTGCGCGTAGAGGACTTCCAG
ATCGAGCACACACGCCAAAAGGCTCGCCGTGCCAAACAGAAGGCACAGCA
GGAGGCGGAGTCCAGCGGTTCCGGCAACGGACATCGGCGCAACATGCCAA
CGCTGTGAAAGCTTTCTAGACCAT

BS16359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 1092 CG5344-PB 1..1092 17..1108 5445 99.9 Plus
wkd-RA 1092 CG5344-PA 1..1092 17..1108 5445 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 366..1457 17..1108 5445 99.9 Plus
wkd-RA 2054 CG5344-RA 301..1392 17..1108 5445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11584124..11584643 589..1108 2600 100 Plus
3R 32079331 3R 11583699..11584065 222..588 1820 99.7 Plus
3R 32079331 3R 11583350..11583556 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:04 has no hits.

BS16359.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:30 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 1..1092 17..1108 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:53 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 364..1457 13..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:59 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 301..1391 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:31 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 364..1457 13..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:40 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 301..1391 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:40 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11583350..11583556 17..223 100 -> Plus
3R 11583701..11584065 224..588 99 -> Plus
3R 11584124..11584642 589..1107 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:59 Download gff for BS16359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409072..7409278 17..223 100 -> Plus
arm_3R 7409423..7409787 224..588 99 -> Plus
arm_3R 7409846..7410364 589..1107 100   Plus

BS16359.pep Sequence

Translation from 16 to 1107

> BS16359.pep
MATAPRSLDTISLCSTVSSCPDRNGFYGGFQRTDKPKEPLSKAQIIAREK
KWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKN
PNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLK
AYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPG
LEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLP
WETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCETLAVL
RSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRAKQKAQQEAESS
GSGNGHRRNMPTL*

BS16359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-PB 363 CG5344-PB 1..363 1..363 1932 100 Plus
wkd-PA 363 CG5344-PA 1..363 1..363 1932 100 Plus
RN-tre-PB 457 CG8085-PB 78..307 48..277 341 33.8 Plus
RN-tre-PE 468 CG8085-PE 78..307 48..277 341 33.8 Plus
RN-tre-PC 485 CG8085-PC 78..307 48..277 341 33.8 Plus