Clone BS16360 Report

Search the DGRC for BS16360

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptHerp-RA
Protein status:BS16360.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16360.3prime Sequence

891 bp (780 high quality bases) assembled on 2007-05-15

> BS16360.3prime
ATGGTCTAGAAAGCTTCTAGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTG
AAGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGC
ATTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAG
CAGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCA
TCTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTC
ATTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCA
TGCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTA
TTGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGAC
ACCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAAC
AACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAAT
CGCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTC
CTGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGAT
CAGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGT
ACCTCCCCGAAGTTTCGCCCAGCAATCAGTGGGACTGAGGGCAACAGGGG
TTGAGTCGGTGGCGGCAAGCCAGATTGGTTCGAACCGGGCAACGTAGAAC
GTAGAGTCAACTGCTGCATGTACTGCGCGTAAGCCTGCTGCATCCAGGCG
TTGTAGATGAGCGCCTGCTGCTGGACAAAGCATGGGGACTGGCACTGGCA
TTGGCAGCAGGTGCTGCTCCCTGGCTCTGCTGCCAAAAGTG

BS16360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 590..1398 825..17 4045 100 Minus
CG14536-PB 777 CG14536-RB 1..777 793..17 3885 100 Minus
CG14536-PA 1398 CG14536-RA 523..589 891..825 310 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1069..1945 891..16 4345 99.8 Minus
Herp-RA 2117 CG14536-RA 858..1734 891..16 4345 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796929..7797326 16..413 1990 100 Plus
2L 23513712 2L 7797397..7797733 414..750 1685 100 Plus
2L 23513712 2L 7798163..7798305 750..891 650 98.6 Plus
Blast to na_te.dros performed 2015-02-12 23:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 149..221 122 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 149..251 112 58.3 Plus

BS16360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:44 Download gff for BS16360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PA 523..1398 17..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:18 Download gff for BS16360.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 858..1734 16..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:46 Download gff for BS16360.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 858..1734 16..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:46 Download gff for BS16360.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7796929..7797326 16..413 100 <- Plus
2L 7797397..7797732 414..749 100 <- Plus
2L 7798163..7798305 750..891 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:18 Download gff for BS16360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796929..7797326 16..413 100 <- Plus
arm_2L 7797397..7797732 414..749 100 <- Plus
arm_2L 7798163..7798305 750..891 98   Plus

BS16360.5prime Sequence

838 bp (835 high quality bases) assembled on 2007-05-15

> BS16360.5prime
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAG
CTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAG

BS16360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 1..822 17..838 4110 100 Plus
CG14536-PB 777 CG14536-RB 1..201 638..838 1005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 547..1368 17..838 4110 100 Plus
Herp-RA 2117 CG14536-RA 336..1157 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7798163..7798624 681..220 2310 100 Minus
2L 23513712 2L 7799309..7799512 220..17 1020 100 Minus
2L 23513712 2L 7797576..7797733 838..681 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:30:34 has no hits.

BS16360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:45 Download gff for BS16360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:34 Download gff for BS16360.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 328..1157 8..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:45 Download gff for BS16360.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 328..1157 8..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:45 Download gff for BS16360.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7797576..7797732 682..838 100 <- Minus
2L 7798163..7798623 221..681 100 <- Minus
2L 7799309..7799520 8..220 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:34 Download gff for BS16360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7797576..7797732 682..838 100 <- Minus
arm_2L 7798163..7798623 221..681 100 <- Minus
arm_2L 7799309..7799520 8..220 98   Minus

BS16360.complete Sequence

1430 bp assembled on 2007-05-07

GenBank Submission: FJ638131

> BS16360.complete
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAG
CTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCG
CCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGA
CTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTG
TCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATC
GCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGA
GCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCG
CCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAG
CGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGC
GGCTGGACCTGCTGCTGCTGGTGAACAAGATGCAATCGATGCACCTCCGG
CTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGAC
GTTTCCGCGGAAGCTGTGGAACCACCAAATGCCAATAATTCTGTGATTTC
CGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGAGG
CGCCGGCGCTCTAGAAGCTTTCTAGACCAT

BS16360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 1398 CG14536-PC 1..1398 17..1414 6990 100 Plus
Herp-RA 1398 CG14536-PA 1..1398 17..1414 6990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 547..1945 17..1415 6995 100 Plus
Herp-RA 2117 CG14536-RA 336..1734 17..1415 6995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7798163..7798624 681..220 2310 100 Minus
2L 23513712 2L 7796929..7797326 1415..1018 1990 100 Minus
2L 23513712 2L 7797397..7797733 1017..681 1685 100 Minus
2L 23513712 2L 7799309..7799512 220..17 1020 100 Minus
Blast to na_te.dros performed 2014-11-27 00:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 1282..1210 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 1282..1180 112 58.3 Minus

BS16360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:32 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:55 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 327..1733 8..1415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:27 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 336..1733 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:32 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 327..1733 8..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:45 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 336..1733 17..1414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:45 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7796930..7797326 1018..1414 100 <- Minus
2L 7797397..7797732 682..1017 100 <- Minus
2L 7798163..7798623 221..681 100 <- Minus
2L 7799309..7799512 17..220 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:27 Download gff for BS16360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796930..7797326 1018..1414 100 <- Minus
arm_2L 7797397..7797732 682..1017 100 <- Minus
arm_2L 7798163..7798623 221..681 100 <- Minus
arm_2L 7799309..7799512 17..220 100   Minus

BS16360.pep Sequence

Translation from 16 to 1413

> BS16360.pep
MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC
WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ
QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH
QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ
ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR
NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF
FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN
INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA
AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF
VITFFTSLLPEAPAL*

BS16360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 1..465 1..465 2411 100 Plus
Herp-PA 465 CG14536-PA 1..465 1..465 2411 100 Plus