Clone BS16361 Report

Search the DGRC for BS16361

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG5273-RA
Protein status:BS16361.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16361.5prime Sequence

862 bp (768 high quality bases) assembled on 2007-05-15

> BS16361.5prime
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGAGCCACCTACTACCCGGCTGCAGGACCCGGC
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCAGCTGCTGCTCCGCCTC
CGGGGGCCACCTACTACCAGGCGGGATCTGCTTTGCCGCCCGGAGCCACC
TATTATTCTGCACCACCACAACAGTCCTCCTCTGGCTTGGGCTTCGGAAC
TGGACTGCTTGCTGGCGGCTTGGGAGGTGCCCTGCTGGGTCACGCCCTCA
CTCCCTCGGGAGGCAGTTCCTCCTCGCAGCCGGGTGCCGCAGCTCCAGCT
GCTGGTCAGGAT

BS16361.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PA 1410 CG5273-RA 1..846 17..862 4205 99.8 Plus
CG5273-PC 1410 CG5273-RC 1..846 17..862 4205 99.8 Plus
CG5273-PB 1410 CG5273-RB 1..846 17..862 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 204..1051 15..862 4225 99.9 Plus
CG5273-RC 2103 CG5273-RC 114..961 15..862 4225 99.9 Plus
CG5273-RA 2124 CG5273-RA 135..982 15..862 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 759797..760529 15..747 3665 100 Plus
X 23542271 X 760681..760797 746..862 570 99.1 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:57 has no hits.

BS16361.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:27:52 Download gff for BS16361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-PB 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:51:07 Download gff for BS16361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 133..982 12..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:32 Download gff for BS16361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 133..982 12..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:32 Download gff for BS16361.5prime
Subject Subject Range Query Range Percent Splice Strand
X 760682..760797 747..862 99   Plus
X 759795..760528 12..746 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:51:07 Download gff for BS16361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 653828..654561 12..746 99 -> Plus
arm_X 654715..654830 747..862 99   Plus

BS16361.3prime Sequence

830 bp (790 high quality bases) assembled on 2007-05-15

> BS16361.3prime
ATGGTCTAGAAAGCTTCTAAAAGCCAGCGAGCCGCTTGGCCACCACTCCG
CTCATAAGCACGAGCAGAAGGGTCCGCATGGTCAATCCTTCCAAGGCCCG
AGCTCCGCCGGTGTGGGAGCGAACGGATGCCTGGATTGGAGCGGCGACAT
CCTGTGCCTGCTGCACTTGCTGCACCTGCTGCGATCCTGGTTGATCAGCG
GCCATGGGCGCCAGTGGTGCTGGACCCTCGCCGGCGGAAGCAGCTGGTGG
CGGGGGTGCCGGGTAGCAGGCAATCTTCTCCACCTCTATCATCTTGGTGC
TGTCAGCCGGATCCGTTTCGTTTACCTTGGTGGGCACACAAATAATGCCT
CCAGGCGGGGGGGGAGCAGCTGGGTCCGGCGCGGTCATGTTAGAGGTCTC
TGGATTAAAGGGCATTGGTGCCATGGGTACGGCTGGCTGTTGGGCATCTT
GGGTGGTGTTGGAAGAGGGAACTGGGGCCGCTGGAACTGCTCCCGGGGCA
GCAGCCACACCTGCTGCATTTATCACAGTGGTGCCATCACTGGCATTCAC
TGGCACGCCGTTGTTAATGATGATTATGCGATCCTGACCAGCAGCTGGAG
CTGCGGCAACCGGCTGCGAGGAGGAACTGCCTCCCGAGGGAGTGAGGGCG
TGACCCAGCAGGGCACCTCCCAAGCCGCCAGCAAGCAGTCCAGTTCCGAA
GCCCAAGCCAGAGGAGGACTGTTGTGGTGGTGCAGAATAATAGGTGGCTC
CGGGCGGCAAAGCAGATCCCGCCTGGTAGTAGGTGGCCCCCGGAGGCGGA
GCAGCAGCTGGGTGATAGCCACCGCCCATG

BS16361.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PA 1410 CG5273-RA 597..1410 830..17 4045 99.8 Minus
CG5273-PC 1410 CG5273-RC 597..1410 830..17 4045 99.8 Minus
CG5273-PB 1410 CG5273-RB 597..1410 830..17 4045 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 802..1616 830..16 4060 99.9 Minus
CG5273-RC 2103 CG5273-RC 712..1526 830..16 4060 99.9 Minus
CG5273-RA 2124 CG5273-RA 733..1547 830..16 4060 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 760681..761362 697..16 3395 99.9 Minus
X 23542271 X 760395..760529 830..696 675 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:33:05 has no hits.

BS16361.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:33:50 Download gff for BS16361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-PB 597..1410 17..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:55 Download gff for BS16361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 733..1556 8..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:46 Download gff for BS16361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 733..1556 8..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:46 Download gff for BS16361.3prime
Subject Subject Range Query Range Percent Splice Strand
X 760395..760528 697..830 100 -> Minus
X 760682..761371 8..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:55 Download gff for BS16361.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 654428..654561 697..830 100 -> Minus
arm_X 654715..655404 8..696 99   Minus

BS16361.complete Sequence

1442 bp assembled on 2007-05-07

GenBank Submission: FJ638132

> BS16361.complete
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGAGCCACCTACTACCCGGCTGCAGGACCCGGC
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCAGCTGCTGCTCCGCCTC
CGGGGGCCACCTACTACCAGGCGGGATCTGCTTTGCCGCCCGGAGCCACC
TATTATTCTGCACCACCACAACAGTCCTCCTCTGGCTTGGGCTTCGGAAC
TGGACTGCTTGCTGGCGGCTTGGGAGGTGCCCTGCTGGGTCACGCCCTCA
CTCCCTCGGGAGGCAGTTCCTCCTCGCAGCCGGTTGCCGCAGCTCCAGCT
GCTGGTCAGGATCGCATAATCATCATTAACAACGGCGTGCCAGTGAATGC
CAGTGATGGCACCACTGTGATAAATGCAGCAGGTGTGGCTGCTGCCCCGG
GAGCAGTTCCAGCGGCCCCAGTTCCCTCTTCCAACACCACCCAAGATGCC
CAACAGCCAGCCGTACCCATGGCACCAATGCCCTTTAATCCAGAGACCTC
TAACATGACCGCGCCGGACCCAGCTGCTCCCCCCCCGCCTGGAGGCATTA
TTTGTGTGCCCACCAAGGTAAACGAAACGGATCCGGCTGACAGCACCAAG
ATGATAGAGGTGGAGAAGATTGCCTGCTACCCGGCACCCCCGCCACCAGC
TGCTTCCGCCGGCGAGGGTCCAGCACCACTGGCGCCCATGGCCGCTGATC
AACCAGGATCGCAGCAGGTGCAGCAAGTGCAGCAGGCACAGGATGTCGCC
GCTCCAATCCAGGCATCCGTTCGCTCCCACACCGGCGGAGCTCGGGCCTT
GGAAGGATTGACCATGCGGACCCTTCTGCTCGTGCTTATGAGCGGAGTGG
TGGCCAAGCGGCTCGCTGGCTTTTAGAAGCTTTCTAGACCAT

BS16361.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 1410 CG5273-PB 1..1410 17..1426 7035 99.9 Plus
CG5273-RC 1410 CG5273-PC 1..1410 17..1426 7035 99.9 Plus
CG5273-RA 1410 CG5273-PA 1..1410 17..1426 7035 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 204..1616 15..1427 7050 99.9 Plus
CG5273-RC 2103 CG5273-RC 114..1526 15..1427 7050 99.9 Plus
CG5273-RA 2124 CG5273-RA 135..1547 15..1427 7050 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 759797..760529 15..747 3665 100 Plus
X 23542271 X 760681..761362 746..1427 3395 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 23:43:35 has no hits.

BS16361.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:33 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 1..1410 17..1426 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:56 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 178..1601 12..1435 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:26 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 137..1546 17..1426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:35 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 178..1601 12..1435 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:57 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 137..1546 17..1426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:57 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
X 759799..760528 17..746 100 -> Plus
X 760682..761361 747..1426 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:26 Download gff for BS16361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 653832..654561 17..746 100 -> Plus
arm_X 654715..655394 747..1426 99   Plus

BS16361.pep Sequence

Translation from 16 to 1425

> BS16361.pep
MMASSGGACSPFAYVAWALFALLLTHGGDNVVDARRNQGNQRKTSSSSSS
SNYGHVTQPSYNTNGHAAGNSHADVAKLSYPNYNSQPNRPMAAGSSGSPG
SAPQPGWNVPQGPPPAYSASNPAGGARPNMHEPPPAYHAPNYGAAPPNYG
AATGSNVHQPQYSGVPAGATYYPAAGPGSGYSPNIPAGATYYPSAGHVPM
GGGYHPAAAPPPGATYYQAGSALPPGATYYSAPPQQSSSGLGFGTGLLAG
GLGGALLGHALTPSGGSSSSQPVAAAPAAGQDRIIIINNGVPVNASDGTT
VINAAGVAAAPGAVPAAPVPSSNTTQDAQQPAVPMAPMPFNPETSNMTAP
DPAAPPPPGGIICVPTKVNETDPADSTKMIEVEKIACYPAPPPPAASAGE
GPAPLAPMAADQPGSQQVQQVQQAQDVAAPIQASVRSHTGGARALEGLTM
RTLLLVLMSGVVAKRLAGF*

BS16361.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PB 469 CG5273-PB 1..469 1..469 2492 100 Plus
CG5273-PC 469 CG5273-PC 1..469 1..469 2492 100 Plus
CG5273-PA 469 CG5273-PA 1..469 1..469 2492 100 Plus
CG31705-PE 682 CG31705-PE 32..618 36..430 650 35.7 Plus
CG31705-PD 682 CG31705-PD 32..618 36..430 650 35.7 Plus