Clone Sequence Records
BS16363.complete Sequence
1244 bp assembled on 2009-12-08
GenBank Submission: KX800674
> BS16363.complete
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAG
GTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATCT
AGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTCG
AAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAATCTCTCTGTA
GAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAGTGCGGATCA
ATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCACCGATGTGA
TGGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCACATTTGATA
GCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACCAATTGGACC
ACCAAGGAAACGCGTGAAAATGAGCTGAAAGCTTTCTAGACCAT
BS16363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 1212 | CG12537-PC | 1..1212 | 17..1228 | 6060 | 100 | Plus |
rdx-RF | 1221 | CG12537-PF | 22..1221 | 29..1228 | 6000 | 100 | Plus |
rdx-RE | 2490 | CG12537-PE | 1291..2490 | 29..1228 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 2802 | CG12537-RC | 360..1573 | 17..1230 | 6070 | 100 | Plus |
rdx-RF | 3856 | CG12537-RF | 532..1733 | 29..1230 | 6010 | 100 | Plus |
rdx-RE | 4159 | CG12537-RE | 1729..2930 | 29..1230 | 6010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 761..464 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 940..758 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 465..303 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971105 | 183..28 | 780 | 100 | Minus |
3R | 32079331 | 3R | 13969184..13969330 | 1230..1084 | 735 | 100 | Minus |
3R | 32079331 | 3R | 13969397..13969541 | 1083..939 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 306..177 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 1098..1145 | 132 | 75 | Plus |
BS16363.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:37 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RD | 350..1560 | 17..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:18 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 360..1570 | 17..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:25 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RD | 350..1560 | 17..1227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:58 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 360..1570 | 17..1227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:58 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969187..13969330 | 1084..1227 | 100 | <- | Minus |
3R | 13969397..13969539 | 941..1083 | 100 | <- | Minus |
3R | 13969608..13969786 | 762..940 | 100 | <- | Minus |
3R | 13969909..13970204 | 466..761 | 100 | <- | Minus |
3R | 13970278..13970439 | 304..465 | 100 | <- | Minus |
3R | 13970508..13970629 | 182..303 | 100 | <- | Minus |
3R | 13970952..13971113 | 17..181 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:18 Download gff for
BS16363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9794909..9795052 | 1084..1227 | 100 | <- | Minus |
arm_3R | 9795119..9795261 | 941..1083 | 100 | <- | Minus |
arm_3R | 9795330..9795508 | 762..940 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 466..761 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 304..465 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 182..303 | 100 | <- | Minus |
arm_3R | 9796674..9796835 | 17..181 | 96 | | Minus |
BS16363.3prime Sequence
855 bp (763 high quality bases) assembled on 2007-05-15
> BS16363.3prime
ATGGTCTAGAAAGCTTTCAGCTCATTTTCACGCGTTTCCTTGGTGGTCCA
ATTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAA
ATGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACAT
CGGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCC
GCACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGA
GAGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTG
CATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTG
GGCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATG
ATCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCAT
GCTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTG
TGCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTT
CTCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCA
CTTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCC
ACGACGCTGACCTCGCAGAAGATGGTCAGCTTATCCTCCGGCAGCAGGCC
GTTGGCCTCGTCCAGCAGGAAGTCTCGTCGGATGAACTTCTTGAAGCCCC
AATCTTTGCCCTGCACAAAACGATAAGCTCTTTGGGATTCCATTGCTTTG
GTTTCCTCACGCTTCGCATTCAGTATGGAAAATTTGAACTTGGCTCTGAC
TTCTG
BS16363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 374..1212 | 855..17 | 4195 | 100 | Minus |
CG9924-PE | 2490 | CG9924-RE | 1652..2490 | 855..17 | 4195 | 100 | Minus |
CG9924-PA | 1221 | CG9924-RA | 383..1221 | 855..17 | 4195 | 100 | Minus |
CG9924-PB | 1125 | CG9924-RB | 287..1125 | 855..17 | 4195 | 100 | Minus |
CG9924-PD | 1212 | CG9924-RD | 374..1212 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 893..1733 | 855..15 | 4205 | 100 | Minus |
rdx-RE | 4159 | CG12537-RE | 2090..2930 | 855..15 | 4205 | 100 | Minus |
rdx-RB | 2311 | CG12537-RB | 912..1752 | 855..15 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 484..781 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 13969608..13969790 | 305..487 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13969184..13969330 | 15..161 | 735 | 100 | Plus |
3R | 32079331 | 3R | 13969397..13969541 | 162..306 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13970278..13970353 | 780..855 | 380 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 147..100 | 132 | 75 | Minus |
BS16363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:09 Download gff for
BS16363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 374..1212 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:32 Download gff for
BS16363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 912..1752 | 15..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:08 Download gff for
BS16363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 912..1752 | 15..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:08 Download gff for
BS16363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969184..13969330 | 15..161 | 100 | <- | Plus |
3R | 13969397..13969539 | 162..304 | 100 | <- | Plus |
3R | 13969608..13969786 | 305..483 | 100 | <- | Plus |
3R | 13969909..13970204 | 484..779 | 100 | <- | Plus |
3R | 13970278..13970353 | 780..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:32 Download gff for
BS16363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9796000..9796075 | 780..855 | 100 | | Plus |
arm_3R | 9794906..9795052 | 15..161 | 100 | <- | Plus |
arm_3R | 9795119..9795261 | 162..304 | 100 | <- | Plus |
arm_3R | 9795330..9795508 | 305..483 | 100 | <- | Plus |
arm_3R | 9795631..9795926 | 484..779 | 100 | <- | Plus |
BS16363.5prime Sequence
868 bp (788 high quality bases) assembled on 2007-05-15
> BS16363.5prime
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGGTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAN
GTTCTTAAAGAAATGCTG
BS16363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 1..852 | 17..868 | 4216 | 99.7 | Plus |
CG9924-PD | 1212 | CG9924-RD | 1..852 | 17..868 | 4216 | 99.7 | Plus |
CG9924-PE | 2490 | CG9924-RE | 1291..2130 | 29..868 | 4156 | 99.7 | Plus |
CG9924-PA | 1221 | CG9924-RA | 22..861 | 29..868 | 4156 | 99.7 | Plus |
CG9924-PB | 1125 | CG9924-RB | 1..765 | 104..868 | 3806 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 2802 | CG12537-RC | 360..1211 | 17..868 | 4234 | 99.8 | Plus |
rdx-RF | 3856 | CG12537-RF | 532..1371 | 29..868 | 4174 | 99.8 | Plus |
rdx-RE | 4159 | CG12537-RE | 1729..2568 | 29..868 | 4174 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 761..464 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 465..303 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971105 | 183..28 | 765 | 99.4 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 306..177 | 650 | 100 | Minus |
3R | 32079331 | 3R | 13969680..13969790 | 868..758 | 544 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:17:25 has no hits.
BS16363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:11 Download gff for
BS16363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:21:18 Download gff for
BS16363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 350..1211 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:26 Download gff for
BS16363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 350..1211 | 8..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:26 Download gff for
BS16363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13970952..13971113 | 17..181 | 96 | | Minus |
3R | 13969680..13969786 | 762..868 | 99 | <- | Minus |
3R | 13969909..13970204 | 466..761 | 100 | <- | Minus |
3R | 13970278..13970439 | 304..465 | 100 | <- | Minus |
3R | 13970508..13970629 | 182..303 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:21:18 Download gff for
BS16363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9795402..9795508 | 762..868 | 99 | <- | Minus |
arm_3R | 9795631..9795926 | 466..761 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 304..465 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 182..303 | 100 | <- | Minus |
arm_3R | 9796674..9796835 | 17..181 | 96 | | Minus |
BS16363.pep Sequence
Translation from 16 to 1227
> BS16363.pep
MALARLPVNECQASQTARVTSNLHASSSTMAVSRVPSPPLPEVNTPVAEN
WCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRV
NPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQR
AYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNIS
GQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAAR
SDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMAD
DLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQT
IDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRV
KMS*
BS16363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-PC | 403 | CG12537-PC | 1..403 | 1..403 | 2064 | 100 | Plus |
rdx-PF | 406 | CG12537-PF | 8..406 | 5..403 | 2047 | 100 | Plus |
rdx-PA | 406 | CG12537-PA | 8..406 | 5..403 | 2047 | 100 | Plus |
rdx-PE | 829 | CG12537-PE | 431..829 | 5..403 | 2047 | 100 | Plus |
rdx-PB | 374 | CG12537-PB | 1..374 | 30..403 | 1923 | 100 | Plus |