Clone BS16363 Report

Search the DGRC for BS16363

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptrdx-RC
Protein status:BS16363.pep: full length peptide match
Sequenced Size:1244

Clone Sequence Records

BS16363.complete Sequence

1244 bp assembled on 2009-12-08

GenBank Submission: KX800674

> BS16363.complete
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAG
GTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATCT
AGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTCG
AAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAATCTCTCTGTA
GAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAGTGCGGATCA
ATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCACCGATGTGA
TGGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCACATTTGATA
GCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACCAATTGGACC
ACCAAGGAAACGCGTGAAAATGAGCTGAAAGCTTTCTAGACCAT

BS16363.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 1212 CG12537-PC 1..1212 17..1228 6060 100 Plus
rdx-RF 1221 CG12537-PF 22..1221 29..1228 6000 100 Plus
rdx-RE 2490 CG12537-PE 1291..2490 29..1228 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 2802 CG12537-RC 360..1573 17..1230 6070 100 Plus
rdx-RF 3856 CG12537-RF 532..1733 29..1230 6010 100 Plus
rdx-RE 4159 CG12537-RE 1729..2930 29..1230 6010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 761..464 1490 100 Minus
3R 32079331 3R 13969608..13969790 940..758 915 100 Minus
3R 32079331 3R 13970278..13970440 465..303 815 100 Minus
3R 32079331 3R 13970950..13971105 183..28 780 100 Minus
3R 32079331 3R 13969184..13969330 1230..1084 735 100 Minus
3R 32079331 3R 13969397..13969541 1083..939 725 100 Minus
3R 32079331 3R 13970505..13970634 306..177 650 100 Minus
Blast to na_te.dros performed 2014-11-28 01:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 1098..1145 132 75 Plus

BS16363.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:37 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RD 350..1560 17..1227 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:18 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 360..1570 17..1227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:25 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RD 350..1560 17..1227 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:58 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 360..1570 17..1227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:58 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13969187..13969330 1084..1227 100 <- Minus
3R 13969397..13969539 941..1083 100 <- Minus
3R 13969608..13969786 762..940 100 <- Minus
3R 13969909..13970204 466..761 100 <- Minus
3R 13970278..13970439 304..465 100 <- Minus
3R 13970508..13970629 182..303 100 <- Minus
3R 13970952..13971113 17..181 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:18 Download gff for BS16363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9794909..9795052 1084..1227 100 <- Minus
arm_3R 9795119..9795261 941..1083 100 <- Minus
arm_3R 9795330..9795508 762..940 100 <- Minus
arm_3R 9795631..9795926 466..761 100 <- Minus
arm_3R 9796000..9796161 304..465 100 <- Minus
arm_3R 9796230..9796351 182..303 100 <- Minus
arm_3R 9796674..9796835 17..181 96   Minus

BS16363.3prime Sequence

855 bp (763 high quality bases) assembled on 2007-05-15

> BS16363.3prime
ATGGTCTAGAAAGCTTTCAGCTCATTTTCACGCGTTTCCTTGGTGGTCCA
ATTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAA
ATGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACAT
CGGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCC
GCACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGA
GAGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTG
CATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTG
GGCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATG
ATCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCAT
GCTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTG
TGCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTT
CTCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCA
CTTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCC
ACGACGCTGACCTCGCAGAAGATGGTCAGCTTATCCTCCGGCAGCAGGCC
GTTGGCCTCGTCCAGCAGGAAGTCTCGTCGGATGAACTTCTTGAAGCCCC
AATCTTTGCCCTGCACAAAACGATAAGCTCTTTGGGATTCCATTGCTTTG
GTTTCCTCACGCTTCGCATTCAGTATGGAAAATTTGAACTTGGCTCTGAC
TTCTG

BS16363.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 374..1212 855..17 4195 100 Minus
CG9924-PE 2490 CG9924-RE 1652..2490 855..17 4195 100 Minus
CG9924-PA 1221 CG9924-RA 383..1221 855..17 4195 100 Minus
CG9924-PB 1125 CG9924-RB 287..1125 855..17 4195 100 Minus
CG9924-PD 1212 CG9924-RD 374..1212 855..17 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 893..1733 855..15 4205 100 Minus
rdx-RE 4159 CG12537-RE 2090..2930 855..15 4205 100 Minus
rdx-RB 2311 CG12537-RB 912..1752 855..15 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 484..781 1490 100 Plus
3R 32079331 3R 13969608..13969790 305..487 915 100 Plus
3R 32079331 3R 13969184..13969330 15..161 735 100 Plus
3R 32079331 3R 13969397..13969541 162..306 725 100 Plus
3R 32079331 3R 13970278..13970353 780..855 380 100 Plus
Blast to na_te.dros performed 2015-02-12 05:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 147..100 132 75 Minus

BS16363.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:09 Download gff for BS16363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 374..1212 17..855 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:32 Download gff for BS16363.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 912..1752 15..855 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:08 Download gff for BS16363.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 912..1752 15..855 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:08 Download gff for BS16363.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13969184..13969330 15..161 100 <- Plus
3R 13969397..13969539 162..304 100 <- Plus
3R 13969608..13969786 305..483 100 <- Plus
3R 13969909..13970204 484..779 100 <- Plus
3R 13970278..13970353 780..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:32 Download gff for BS16363.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9796000..9796075 780..855 100   Plus
arm_3R 9794906..9795052 15..161 100 <- Plus
arm_3R 9795119..9795261 162..304 100 <- Plus
arm_3R 9795330..9795508 305..483 100 <- Plus
arm_3R 9795631..9795926 484..779 100 <- Plus

BS16363.5prime Sequence

868 bp (788 high quality bases) assembled on 2007-05-15

> BS16363.5prime
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGGTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAN
GTTCTTAAAGAAATGCTG

BS16363.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 1..852 17..868 4216 99.7 Plus
CG9924-PD 1212 CG9924-RD 1..852 17..868 4216 99.7 Plus
CG9924-PE 2490 CG9924-RE 1291..2130 29..868 4156 99.7 Plus
CG9924-PA 1221 CG9924-RA 22..861 29..868 4156 99.7 Plus
CG9924-PB 1125 CG9924-RB 1..765 104..868 3806 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 2802 CG12537-RC 360..1211 17..868 4234 99.8 Plus
rdx-RF 3856 CG12537-RF 532..1371 29..868 4174 99.8 Plus
rdx-RE 4159 CG12537-RE 1729..2568 29..868 4174 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 761..464 1490 100 Minus
3R 32079331 3R 13970278..13970440 465..303 815 100 Minus
3R 32079331 3R 13970950..13971105 183..28 765 99.4 Minus
3R 32079331 3R 13970505..13970634 306..177 650 100 Minus
3R 32079331 3R 13969680..13969790 868..758 544 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 16:17:25 has no hits.

BS16363.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:11 Download gff for BS16363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:21:18 Download gff for BS16363.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 350..1211 8..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:26 Download gff for BS16363.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 350..1211 8..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:26 Download gff for BS16363.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13970952..13971113 17..181 96   Minus
3R 13969680..13969786 762..868 99 <- Minus
3R 13969909..13970204 466..761 100 <- Minus
3R 13970278..13970439 304..465 100 <- Minus
3R 13970508..13970629 182..303 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:21:18 Download gff for BS16363.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9795402..9795508 762..868 99 <- Minus
arm_3R 9795631..9795926 466..761 100 <- Minus
arm_3R 9796000..9796161 304..465 100 <- Minus
arm_3R 9796230..9796351 182..303 100 <- Minus
arm_3R 9796674..9796835 17..181 96   Minus

BS16363.pep Sequence

Translation from 16 to 1227

> BS16363.pep
MALARLPVNECQASQTARVTSNLHASSSTMAVSRVPSPPLPEVNTPVAEN
WCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRV
NPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQR
AYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNIS
GQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAAR
SDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMAD
DLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQT
IDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRV
KMS*

BS16363.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PC 403 CG12537-PC 1..403 1..403 2064 100 Plus
rdx-PF 406 CG12537-PF 8..406 5..403 2047 100 Plus
rdx-PA 406 CG12537-PA 8..406 5..403 2047 100 Plus
rdx-PE 829 CG12537-PE 431..829 5..403 2047 100 Plus
rdx-PB 374 CG12537-PB 1..374 30..403 1923 100 Plus