Clone BS16364 Report

Search the DGRC for BS16364

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptDrep-1-RA
Protein status:BS16364.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16364.3prime Sequence

903 bp (825 high quality bases) assembled on 2007-05-15

> BS16364.3prime
ATGGTCTAGAAAGCTTTCAGATGTCGCCGTTGGCATTTGGATTTCTATTT
GGATTGGCATTGGCCTCATTGGCAGCCGCTTCGGCAGCGGAGGATCCCAT
CGCTCCACTGGCTGTGGCGCAAGTGGTGGTGGCCTCGCCCACCGTAATTG
TTATCGTCGTGTTTTGATTGTCGCACTGCACCACCTCGATGGTGCGGGTG
TTGCTCGTCGTTGTGGTGCTCATCTGTCCACTCTCCGCCTCGTTCAACTG
CCGTCCAATCTCCCGGTCAATGGCCTCCGCATCCTCGGGATAACGTTCCG
AGCAGAAAATGGCACCAGCTTTCAATAGCTTCAGCAGATTTAAACGATCC
TCGGCATTCCGCTTGGCACACAATGGCCTTCCCGCATCCTTGAGCTGCTC
CATAAACTCCTTTCCCGTGATGTCCACCAACGAGTTGGGATCCATGTTGG
AGAGTGAGTCCAGATCGGCATCGTTCATCACGGACACGTTGCAGAGGTTG
TTCTGCAGCTGGCCCACCAACTGGCGGATGCGAGCCGACTCCGAGTTGTT
GGCATCGGTGGTGTCGCCCTCGCCTCCTCCGTTCAGCTCTCCGTTTCCAG
TTCCTGCCTCGTTGCCATGTGGAGTGGTTATCGTCACGTAGTGAGTGGGA
TCGATCCAATGTTCTCCGGGAAAGACGGCCACCAGTTCCGTATTCTCGTC
GAGGGTGCGAAAGTACTCCTCATCATCGATCTCCGTGCCGTCGGAGTCCA
GGTGGATGGTGGGCAGGTGGTCGCACTTCTCGAACTTCTCCGCCACCTTG
CTGCGGATCTCCTCCAGACTGGAGGCGCAGACAGCCTTCTTAATGTTGCG
TGTTACGTCCTTGACTTTGAAAGGCTTTTTGGAGTCGCCCGAGTTCGCTG
CAG

BS16364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8357-PA 894 Rep1-RA 8..894 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 260..1146 903..17 4435 100 Minus
Drep-1-RA 2153 CG8357-RA 260..1146 903..17 4435 100 Minus
Drep-3-RA 1799 CG8364-RA 649..765 754..638 180 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12049165 379..17 1815 100 Minus
2R 25286936 2R 12048475..12048747 649..377 1365 100 Minus
2R 25286936 2R 12047976..12048191 865..650 1080 100 Minus
2R 25286936 2R 12044871..12044910 903..864 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:19:11 has no hits.

BS16364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:48 Download gff for BS16364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8357-PA 8..894 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:41 Download gff for BS16364.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 260..1150 13..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:23 Download gff for BS16364.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 260..1150 13..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:23 Download gff for BS16364.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12048805..12049169 13..377 99   Minus
2R 12044871..12044908 866..903 100 -> Minus
2R 12047976..12048191 650..865 100 -> Minus
2R 12048475..12048746 378..649 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:41 Download gff for BS16364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932376..7932413 866..903 100 -> Minus
arm_2R 7935481..7935696 650..865 100 -> Minus
arm_2R 7935980..7936251 378..649 100 -> Minus
arm_2R 7936310..7936674 13..377 99   Minus

BS16364.5prime Sequence

860 bp (781 high quality bases) assembled on 2007-05-15

> BS16364.5prime
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCCGCTGCGAAGCG
GCTGCCAATG

BS16364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8357-PA 894 Rep1-RA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 252..1096 16..860 4180 99.8 Plus
Drep-1-RA 2153 CG8357-RA 252..1096 16..860 4180 99.8 Plus
Drep-3-RA 1799 CG8364-RA 649..765 173..289 180 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12049115 548..860 1490 98.4 Plus
2R 25286936 2R 12048475..12048747 278..550 1365 100 Plus
2R 25286936 2R 12047976..12048191 62..277 1080 100 Plus
2R 25286936 2R 12044863..12044910 16..63 240 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:52:14 has no hits.

BS16364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:49 Download gff for BS16364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8357-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:38 Download gff for BS16364.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 249..1096 10..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:29 Download gff for BS16364.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 249..1096 10..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:29 Download gff for BS16364.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12044860..12044908 10..61 94 -> Plus
2R 12047976..12048191 62..277 100 -> Plus
2R 12048475..12048746 278..549 100 -> Plus
2R 12048805..12049115 550..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:38 Download gff for BS16364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932365..7932413 10..61 94 -> Plus
arm_2R 7935481..7935696 62..277 100 -> Plus
arm_2R 7935980..7936251 278..549 100 -> Plus
arm_2R 7936310..7936620 550..860 99   Plus

BS16364.complete Sequence

926 bp assembled on 2007-05-07

GenBank Submission: FJ638133

> BS16364.complete
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCGCTGCCGAAGCG
GCTGCCAATGAGGCCAATGCCAATCCAAATAGAAATCCAAATGCCAACGG
CGACATCTGAAAGCTTTCTAGACCAT

BS16364.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 921 CG8357-PB 1..894 17..910 4470 100 Plus
Drep-1-RA 894 CG8357-PA 1..894 17..910 4470 100 Plus
Drep-3-RA 801 CG8364-PA 472..588 173..289 180 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 252..1146 16..910 4475 100 Plus
Drep-1-RA 2153 CG8357-RA 252..1146 16..910 4475 100 Plus
Drep-3-RA 1799 CG8364-RA 649..765 173..289 180 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12049165 548..910 1815 100 Plus
2R 25286936 2R 12048475..12048747 278..550 1365 100 Plus
2R 25286936 2R 12047976..12048191 62..277 1080 100 Plus
2R 25286936 2R 12044863..12044910 16..63 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:03:30 has no hits.

BS16364.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:36 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:58 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 247..1148 10..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:31 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 253..1145 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:36 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 247..1148 10..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:51 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 253..1145 17..909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:51 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12044864..12044908 17..61 100 -> Plus
2R 12047976..12048191 62..277 100 -> Plus
2R 12048475..12048746 278..549 100 -> Plus
2R 12048805..12049164 550..909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:31 Download gff for BS16364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932369..7932413 17..61 100 -> Plus
arm_2R 7935481..7935696 62..277 100 -> Plus
arm_2R 7935980..7936251 278..549 100 -> Plus
arm_2R 7936310..7936669 550..909 100   Plus

BS16364.pep Sequence

Translation from 16 to 909

> BS16364.pep
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDI*

BS16364.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-PA 297 CG8357-PA 1..297 1..297 1538 100 Plus
Drep-1-PB 306 CG8357-PB 1..297 1..297 1538 100 Plus
Drep-3-PA 266 CG8364-PA 116..245 9..168 382 51.9 Plus
Drep-3-PB 266 CG8364-PB 116..245 9..168 382 51.9 Plus