Clone Sequence Records
BS16364.3prime Sequence
903 bp (825 high quality bases) assembled on 2007-05-15
> BS16364.3prime
ATGGTCTAGAAAGCTTTCAGATGTCGCCGTTGGCATTTGGATTTCTATTT
GGATTGGCATTGGCCTCATTGGCAGCCGCTTCGGCAGCGGAGGATCCCAT
CGCTCCACTGGCTGTGGCGCAAGTGGTGGTGGCCTCGCCCACCGTAATTG
TTATCGTCGTGTTTTGATTGTCGCACTGCACCACCTCGATGGTGCGGGTG
TTGCTCGTCGTTGTGGTGCTCATCTGTCCACTCTCCGCCTCGTTCAACTG
CCGTCCAATCTCCCGGTCAATGGCCTCCGCATCCTCGGGATAACGTTCCG
AGCAGAAAATGGCACCAGCTTTCAATAGCTTCAGCAGATTTAAACGATCC
TCGGCATTCCGCTTGGCACACAATGGCCTTCCCGCATCCTTGAGCTGCTC
CATAAACTCCTTTCCCGTGATGTCCACCAACGAGTTGGGATCCATGTTGG
AGAGTGAGTCCAGATCGGCATCGTTCATCACGGACACGTTGCAGAGGTTG
TTCTGCAGCTGGCCCACCAACTGGCGGATGCGAGCCGACTCCGAGTTGTT
GGCATCGGTGGTGTCGCCCTCGCCTCCTCCGTTCAGCTCTCCGTTTCCAG
TTCCTGCCTCGTTGCCATGTGGAGTGGTTATCGTCACGTAGTGAGTGGGA
TCGATCCAATGTTCTCCGGGAAAGACGGCCACCAGTTCCGTATTCTCGTC
GAGGGTGCGAAAGTACTCCTCATCATCGATCTCCGTGCCGTCGGAGTCCA
GGTGGATGGTGGGCAGGTGGTCGCACTTCTCGAACTTCTCCGCCACCTTG
CTGCGGATCTCCTCCAGACTGGAGGCGCAGACAGCCTTCTTAATGTTGCG
TGTTACGTCCTTGACTTTGAAAGGCTTTTTGGAGTCGCCCGAGTTCGCTG
CAG
BS16364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8357-PA | 894 | Rep1-RA | 8..894 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 260..1146 | 903..17 | 4435 | 100 | Minus |
Drep-1-RA | 2153 | CG8357-RA | 260..1146 | 903..17 | 4435 | 100 | Minus |
Drep-3-RA | 1799 | CG8364-RA | 649..765 | 754..638 | 180 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048803..12049165 | 379..17 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 12048475..12048747 | 649..377 | 1365 | 100 | Minus |
2R | 25286936 | 2R | 12047976..12048191 | 865..650 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 12044871..12044910 | 903..864 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:19:11 has no hits.
BS16364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:48 Download gff for
BS16364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8357-PA | 8..894 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:41 Download gff for
BS16364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 260..1150 | 13..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:23 Download gff for
BS16364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 260..1150 | 13..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:23 Download gff for
BS16364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12048805..12049169 | 13..377 | 99 | | Minus |
2R | 12044871..12044908 | 866..903 | 100 | -> | Minus |
2R | 12047976..12048191 | 650..865 | 100 | -> | Minus |
2R | 12048475..12048746 | 378..649 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:41 Download gff for
BS16364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7932376..7932413 | 866..903 | 100 | -> | Minus |
arm_2R | 7935481..7935696 | 650..865 | 100 | -> | Minus |
arm_2R | 7935980..7936251 | 378..649 | 100 | -> | Minus |
arm_2R | 7936310..7936674 | 13..377 | 99 | | Minus |
BS16364.5prime Sequence
860 bp (781 high quality bases) assembled on 2007-05-15
> BS16364.5prime
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCCGCTGCGAAGCG
GCTGCCAATG
BS16364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8357-PA | 894 | Rep1-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 252..1096 | 16..860 | 4180 | 99.8 | Plus |
Drep-1-RA | 2153 | CG8357-RA | 252..1096 | 16..860 | 4180 | 99.8 | Plus |
Drep-3-RA | 1799 | CG8364-RA | 649..765 | 173..289 | 180 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048803..12049115 | 548..860 | 1490 | 98.4 | Plus |
2R | 25286936 | 2R | 12048475..12048747 | 278..550 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 12047976..12048191 | 62..277 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 12044863..12044910 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:14 has no hits.
BS16364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:49 Download gff for
BS16364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8357-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:10:38 Download gff for
BS16364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 249..1096 | 10..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:29 Download gff for
BS16364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 249..1096 | 10..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:29 Download gff for
BS16364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12044860..12044908 | 10..61 | 94 | -> | Plus |
2R | 12047976..12048191 | 62..277 | 100 | -> | Plus |
2R | 12048475..12048746 | 278..549 | 100 | -> | Plus |
2R | 12048805..12049115 | 550..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:10:38 Download gff for
BS16364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7932365..7932413 | 10..61 | 94 | -> | Plus |
arm_2R | 7935481..7935696 | 62..277 | 100 | -> | Plus |
arm_2R | 7935980..7936251 | 278..549 | 100 | -> | Plus |
arm_2R | 7936310..7936620 | 550..860 | 99 | | Plus |
BS16364.complete Sequence
926 bp assembled on 2007-05-07
GenBank Submission: FJ638133
> BS16364.complete
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCGCTGCCGAAGCG
GCTGCCAATGAGGCCAATGCCAATCCAAATAGAAATCCAAATGCCAACGG
CGACATCTGAAAGCTTTCTAGACCAT
BS16364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 921 | CG8357-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
Drep-1-RA | 894 | CG8357-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Drep-3-RA | 801 | CG8364-PA | 472..588 | 173..289 | 180 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 252..1146 | 16..910 | 4475 | 100 | Plus |
Drep-1-RA | 2153 | CG8357-RA | 252..1146 | 16..910 | 4475 | 100 | Plus |
Drep-3-RA | 1799 | CG8364-RA | 649..765 | 173..289 | 180 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048803..12049165 | 548..910 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 12048475..12048747 | 278..550 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 12047976..12048191 | 62..277 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 12044863..12044910 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:03:30 has no hits.
BS16364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:36 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:58 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 247..1148 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:31 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 253..1145 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:36 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 247..1148 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:51 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 253..1145 | 17..909 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:51 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12044864..12044908 | 17..61 | 100 | -> | Plus |
2R | 12047976..12048191 | 62..277 | 100 | -> | Plus |
2R | 12048475..12048746 | 278..549 | 100 | -> | Plus |
2R | 12048805..12049164 | 550..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:31 Download gff for
BS16364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7932369..7932413 | 17..61 | 100 | -> | Plus |
arm_2R | 7935481..7935696 | 62..277 | 100 | -> | Plus |
arm_2R | 7935980..7936251 | 278..549 | 100 | -> | Plus |
arm_2R | 7936310..7936669 | 550..909 | 100 | | Plus |
BS16364.pep Sequence
Translation from 16 to 909
> BS16364.pep
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDI*
BS16364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-PA | 297 | CG8357-PA | 1..297 | 1..297 | 1538 | 100 | Plus |
Drep-1-PB | 306 | CG8357-PB | 1..297 | 1..297 | 1538 | 100 | Plus |
Drep-3-PA | 266 | CG8364-PA | 116..245 | 9..168 | 382 | 51.9 | Plus |
Drep-3-PB | 266 | CG8364-PB | 116..245 | 9..168 | 382 | 51.9 | Plus |