Clone Sequence Records
BS16369.complete Sequence
1679 bp assembled on 2009-12-07
GenBank Submission: KX800555
> BS16369.complete
GAAGTTATCAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCC
TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT
GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA
TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA
GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT
CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT
CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA
GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT
ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG
TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG
ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG
GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT
GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG
TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAA
AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA
CTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGC
TGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTT
GGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAGGTGACCAA
TGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCT
CCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGCACTCGGTG
GGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAACTACGTGGA
GCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAACAATGGCC
ACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACCGAGGACCC
TCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAATACATTAC
GTCGGTGCAGGGCGATGGCCTGATCGTATCGACGCCCACGGGAAGTACAG
CATATGCGGCAGCAGCCGGTGCCTCCATGATCCATCCCTCCGTGCCGGCC
ATTTTGGTGACGCCCATTTGCCCGCACTCGCTGAGCTTCAGGCCCATTGT
GGTGCCCGCCGGAGTGGAGCTAAAGATATCAATTTCACCTGATAGCCGCA
ACACCTCACGCGTTTCCTTCGACGGACGCAACGACCAGGAGCTGAACCAT
GGGGACAGCCTGCGAGTGACCACCTCAATCTATCCCGTGCCCAGCATTTG
CTCCCAGGACCAAATCTCCGATTGGTTTGACTCCCTGGCCGAGGGTCTGC
ACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGATGAGCTGTCGGACTTG
ACCACTTCGGGGTCGGAGGACACGCTCGATGACTTTGACAATCTTCAGAT
CTACGATGCGTAAAAGCTTTCTAGACCAT
BS16369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 1647 | CG6145-PC | 1..1647 | 17..1663 | 8235 | 100 | Plus |
| CG6145-RF | 1455 | CG6145-PF | 132..1455 | 340..1663 | 6620 | 100 | Plus |
| CG6145-RE | 1452 | CG6145-PE | 129..1452 | 340..1663 | 6620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..1869 | 15..1663 | 8245 | 100 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..1435 | 339..1663 | 6625 | 100 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..1598 | 340..1663 | 6620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538855 | 1375..718 | 3290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538972..13539349 | 717..340 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 13542160..13542485 | 340..15 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13537762..13538051 | 1663..1374 | 1450 | 100 | Minus |
| 2R | 25286936 | 2R | 13548954..13549224 | 1375..1105 | 770 | 85.6 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 948..718 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 585..340 | 580 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13548644..13548896 | 1626..1374 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:25 has no hits.
BS16369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:58 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 1..1647 | 17..1663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:39 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 216..1860 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:19 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 223..1867 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:32 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 216..1860 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:56 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 223..1867 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:56 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537764..13538049 | 1376..1661 | 100 | <- | Minus |
| 2R | 13538198..13538855 | 718..1375 | 100 | <- | Minus |
| 2R | 13538972..13539349 | 340..717 | 100 | <- | Minus |
| 2R | 13542161..13542483 | 17..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:19 Download gff for
BS16369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425269..9425554 | 1376..1661 | 100 | <- | Minus |
| arm_2R | 9425703..9426360 | 718..1375 | 100 | <- | Minus |
| arm_2R | 9426477..9426854 | 340..717 | 100 | <- | Minus |
| arm_2R | 9429666..9429988 | 17..339 | 100 | | Minus |
BS16369.3prime Sequence
896 bp (820 high quality bases) assembled on 2007-05-15
> BS16369.3prime
ATGGTCTAGAAAGCTTTTACGCATCGTAGATCTGAAGATTGTCAAAGTCA
TCGAGCGTGTCCTCCGACCCCGAAGTGGTCAAGTCCGACAGCTCATCAAG
GCACTTCTGCCGCTTGCGGACATTCCAGTGCAGACCCTCGGCCAGGGAGT
CAAACCAATCGGAGATTTGGTCCTGGGAGCAAATGCTGGGCACGGGATAG
ATTGAGGTGGTCACTCGCAGGCTGTCCCCATGGTTCAGCTCCTGGTCGTT
GCGTCCGTCGAAGGAAACGCGTGAGGTGTTGCGGCTATCAGGTGAAATTG
ATATCTTTAGCTCCACTCCGGCGGGCACCACAATGGGCCTGAAGCTCAGC
GAGTGCGGGCAAATGGGCGTCACCAAAATGGCCGGCACGGAGGGATGGAT
CATGGAGGCACCGGCTGCTGCCGCATATGCTGTACTTCCCGTGGGCGTCG
ATACGATCAGGCCATCGCCCTGCACCGACGTAATGTATTTGCCCTCCAAG
AAGATATCAATGTTGCTCAGGTACGGCGAGGGTCCTCGGTTGATGACCAC
CTCGTTAAGCACCAGGATGCTATTGTTGTGGCCATTGTTATTATTGCTGC
CAGCTTTTCCTGTTTGTCCGTTGTTAAGCTCCACGTAGTTGAGCTGCCTT
TGGAAACTCGGTATCAGGAGATTACCACCCACCGAGTGCAGAAGCGATTC
CTTGCGGCGTTCGCCCTTGCGGTGGATGGAGCAGCGCAGGCGACTACGTA
GCGTTAGGGCAGCATGACCCTCCAGGACATTGGTCACCTGTTCCTGGAAG
TTGTCGCACTGGAAGGGCGTAAGAAACCCAAGGGAGCCCAGATAGAAGGC
CATCACCGGTGGGACAGATTGCTGGAACAGCTGTGAGGCGTACAGC
BS16369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PA | 1563 | CG6145-RA | 684..1563 | 896..17 | 4400 | 100 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 768..1647 | 896..17 | 4400 | 100 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 384..1263 | 896..17 | 4400 | 100 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 664..846 | 481..299 | 465 | 90.1 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 901..1083 | 481..299 | 465 | 90.1 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1009..1191 | 481..299 | 465 | 90.1 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 898..1080 | 481..299 | 465 | 90.1 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 996..1061 | 149..84 | 155 | 89.3 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 1233..1298 | 149..84 | 155 | 89.3 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1341..1406 | 149..84 | 155 | 89.3 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 1230..1295 | 149..84 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 719..1598 | 896..17 | 4400 | 100 | Minus |
| CG6145-RE | 1843 | CG6145-RE | 573..1452 | 896..17 | 4400 | 100 | Minus |
| CG6145-RB | 1826 | CG6145-RB | 556..1435 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538789 | 305..896 | 2960 | 100 | Plus |
| 2R | 25286936 | 2R | 13537762..13538051 | 17..306 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 13548954..13549224 | 305..575 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13548644..13548896 | 54..306 | 545 | 81 | Plus |
| 2R | 25286936 | 2R | 13549306..13549470 | 732..896 | 375 | 81.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:37:37 has no hits.
BS16369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:16 Download gff for
BS16369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PB | 384..1263 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:33 Download gff for
BS16369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 556..1439 | 13..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:41 Download gff for
BS16369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 556..1439 | 13..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:41 Download gff for
BS16369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537758..13538049 | 13..304 | 99 | <- | Plus |
| 2R | 13538198..13538789 | 305..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:33 Download gff for
BS16369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425263..9425554 | 13..304 | 99 | <- | Plus |
| arm_2R | 9425703..9426294 | 305..896 | 100 | | Plus |
BS16369.5prime Sequence
866 bp (847 high quality bases) assembled on 2007-05-15
> BS16369.5prime
GAAGTTATCAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCC
TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT
GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA
TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA
GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT
CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT
CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA
GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT
ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG
TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG
ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG
GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT
GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG
TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAA
AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA
CTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGC
TGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTT
GGGGTTCTTACGCCCT
BS16369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PC | 1647 | CG6145-RC | 1..850 | 17..866 | 4225 | 99.8 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 240..766 | 340..866 | 2610 | 99.8 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..466 | 401..866 | 2305 | 99.7 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 209..329 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 317..437 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 206..326 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..92 | 401..492 | 260 | 91.3 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 478..566 | 701..789 | 195 | 88.7 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 586..674 | 701..789 | 195 | 88.7 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 475..563 | 701..789 | 195 | 88.7 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 241..329 | 701..789 | 195 | 88.7 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 370..425 | 530..585 | 155 | 91 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 478..533 | 530..585 | 155 | 91 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 367..422 | 530..585 | 155 | 91 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 133..188 | 530..585 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..1072 | 15..866 | 4245 | 99.9 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..638 | 339..866 | 2625 | 99.8 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..801 | 340..866 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538972..13539349 | 717..340 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 13542160..13542485 | 340..15 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13538707..13538855 | 866..718 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 585..340 | 580 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13549388..13549536 | 866..718 | 385 | 83.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:59:38 has no hits.
BS16369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:15 Download gff for
BS16369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PC | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:56 Download gff for
BS16369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 221..1072 | 15..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:28 Download gff for
BS16369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 221..1072 | 15..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:28 Download gff for
BS16369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538707..13538855 | 718..866 | 99 | <- | Minus |
| 2R | 13538972..13539349 | 340..717 | 100 | <- | Minus |
| 2R | 13542161..13542485 | 15..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:56 Download gff for
BS16369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9426212..9426360 | 718..866 | 99 | <- | Minus |
| arm_2R | 9426477..9426854 | 340..717 | 100 | <- | Minus |
| arm_2R | 9429666..9429990 | 15..339 | 100 | | Minus |
BS16369.pep Sequence
Translation from 16 to 1662
> BS16369.pep
MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR
QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR
RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV
KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL
GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH
AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ
TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD
GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV
ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI
SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDA*
BS16369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PC | 548 | CG6145-PC | 1..548 | 1..548 | 2860 | 100 | Plus |
| CG6145-PA | 520 | CG6145-PA | 79..520 | 107..548 | 2293 | 99.8 | Plus |
| CG6145-PF | 484 | CG6145-PF | 35..484 | 100..548 | 2292 | 98.9 | Plus |
| CG6145-PE | 483 | CG6145-PE | 8..483 | 64..548 | 2292 | 92.6 | Plus |
| CG6145-PB | 420 | CG6145-PB | 1..420 | 129..548 | 2173 | 100 | Plus |
