Clone BS16370 Report

Search the DGRC for BS16370

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG33993-RA
Protein status:BS16370.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16370.3prime Sequence

887 bp (715 high quality bases) assembled on 2007-05-15

> BS16370.3prime
ATGGTCTAGAAAGCTTTCACACATTCAAATCGGCCATCATTTTGCGAAAG
TCGTTCAGCGAGCCATACATCTCGAAGTCCGCTCCCCCGTTTCCGGTTCC
GCCTGCGTAGGCGCCCTGCGATCGTTGCGATCGGGTACTAGGTGGGCGTG
GCAGGGTCAGCGGCACGGGCAACAGTTCCGGCATCACCGAGTGGTGCGTG
ATCAGCGCCTTCAGCGAACTGAACTCCTTGGTGAAGCCCTTTATCTTGTA
GCCCCTTTGCGTCCGCAGGATCAGATAGTGGGCCACTCGTGGTGAAGGTG
GTGGCACTCGCAGCGAGAGGGCGAAACATCCCGGCTTTGTGCTGCTCTGG
CGCACTAGAAACGCACCTGGACTCTGTCGGGACAGGGCCTCCAGGGATAT
TTCCCTGGGAATGCCCGCTTGAAACCAGGCGGCTCCCTTAAGCTCCTGCT
GCTCGGCTAGGCTGAGATTATCCAGGCGCAGGGCACTGTGGCCGGGAAAC
AATTTCGGACTGGAGTTGGCGCTGCACGTCTCTCTCAGATACTTTTTGCT
GGCGGCGGGCAGCTCCACCTGCAGCCGCTGGGTGGCACTCTCCAGTGCGG
ACAGTGACTGGCGGCAGGAGTCGCCGAACTTGCTGGCCACGTACTTGTCC
GGCTCGCAGATGGCCTCGTTCACATAGCCATCGGAGATGGTCTGAGTGGA
TCCACAGCCGGATCCGGAGGTCAGCGAGGAGCCGCAGGTGCTGTGCATCA
GGGGGCGGCTGTCCTCGGTTCCCCGCAGCAGTCCAATGCCCATGGTCAGG
CGTTTCACCAGCGGCGGCTTATCCACCAAACGACGGCAATTATTCATTTC
TGTGGGCGAATTATCCTCCTCGGAGCTGGGCGAGCGC

BS16370.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 1266 CG33993-RA 396..1266 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2404 CG33993-RA 800..1670 887..17 4355 100 Minus
CG33993-RB 1316 CG33993-RB 118..911 810..17 3970 100 Minus
PVRAP-RA 2919 CG32406-RA 1810..2118 445..141 295 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5934405..5934694 520..809 1450 100 Plus
3L 28110227 3L 5934053..5934335 238..520 1415 100 Plus
3L 28110227 3L 5933770..5933993 17..240 1120 100 Plus
3L 28110227 3L 5937397..5937477 807..887 405 100 Plus
3L 28110227 3L 6025442..6025509 214..147 205 86.8 Minus
Blast to na_te.dros performed on 2015-02-04 21:12:48 has no hits.

BS16370.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:53 Download gff for BS16370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-PA 396..1266 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:29 Download gff for BS16370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 800..1675 12..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:53 Download gff for BS16370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 800..1675 12..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:53 Download gff for BS16370.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5933765..5933991 12..238 99 <- Plus
3L 5934054..5934334 239..519 100 <- Plus
3L 5934405..5934693 520..808 100 <- Plus
3L 5937399..5937477 809..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:29 Download gff for BS16370.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5927505..5927793 520..808 100 <- Plus
arm_3L 5926865..5927091 12..238 99 <- Plus
arm_3L 5927154..5927434 239..519 100 <- Plus
arm_3L 5930499..5930577 809..887 100   Plus

BS16370.5prime Sequence

858 bp (837 high quality bases) assembled on 2007-05-15

> BS16370.5prime
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCT

BS16370.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 1266 CG33993-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2404 CG33993-RA 405..1246 17..858 4210 100 Plus
CG33993-RB 1316 CG33993-RB 118..487 489..858 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5937397..5937735 492..154 1695 100 Minus
3L 28110227 3L 5934405..5934694 779..490 1450 100 Minus
3L 28110227 3L 5937829..5937968 156..17 700 100 Minus
3L 28110227 3L 5934256..5934335 858..779 400 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:40 has no hits.

BS16370.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:53 Download gff for BS16370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:41 Download gff for BS16370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 393..1246 6..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:27 Download gff for BS16370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 393..1246 6..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:27 Download gff for BS16370.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5934256..5934334 780..858 100 <- Minus
3L 5934405..5934693 491..779 100 <- Minus
3L 5937399..5937732 157..490 100 <- Minus
3L 5937829..5937980 6..156 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:41 Download gff for BS16370.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5927356..5927434 780..858 100 <- Minus
arm_3L 5927505..5927793 491..779 100 <- Minus
arm_3L 5930499..5930832 157..490 100 <- Minus
arm_3L 5930929..5931080 6..156 96   Minus

BS16370.complete Sequence

1298 bp assembled on 2007-05-07

GenBank Submission: FJ638134

> BS16370.complete
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCTTAAGGGAGCCGCCTGGTTTCAAGCGGGCATTCCCAGGGAAAT
ATCCCTGGAGGCCCTGTCCCGACAGAGTCCAGGTGCGTTTCTAGTGCGCC
AGAGCAGCACAAAGCCGGGATGTTTCGCCCTCTCGCTGCGAGTGCCACCA
CCTTCACCACGAGTGGCCCACTATCTGATCCTGCGGACGCAAAGGGGCTA
CAAGATAAAGGGCTTCACCAAGGAGTTCAGTTCGCTGAAGGCGCTGATCA
CGCACCACTCGGTGATGCCGGAACTGTTGCCCGTGCCGCTGACCCTGCCA
CGCCCACCTAGTACCCGATCGCAACGATCGCAGGGCGCCTACGCAGGCGG
AACCGGAAACGGGGGAGCGGACTTCGAGATGTATGGCTCGCTGAACGACT
TTCGCAAAATGATGGCCGATTTGAATGTGTGAAAGCTTTCTAGACCAT

BS16370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 1266 CG33993-PA 1..1266 17..1282 6330 100 Plus
CG33993-RB 777 CG33993-PB 1..777 506..1282 3885 100 Plus
PVRAP-RA 1425 CG32406-PA 1006..1307 854..1152 260 73.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2404 CG33993-RA 405..1670 17..1282 6330 100 Plus
CG33993-RB 1316 CG33993-RB 118..911 489..1282 3970 100 Plus
PVRAP-RA 2919 CG32406-RA 1810..2111 854..1152 260 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5937397..5937735 492..154 1695 100 Minus
3L 28110227 3L 5934405..5934694 779..490 1450 100 Minus
3L 28110227 3L 5934053..5934335 1061..779 1415 100 Minus
3L 28110227 3L 5933770..5933993 1282..1059 1120 100 Minus
3L 28110227 3L 5937829..5937968 156..17 700 100 Minus
3L 28110227 3L 6025442..6025509 1085..1152 205 86.8 Plus
Blast to na_te.dros performed on 2014-11-27 11:02:41 has no hits.

BS16370.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:38 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:00 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 390..1672 6..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:28 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 405..1669 17..1281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:38 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 390..1672 6..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:25 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 405..1669 17..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:25 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5937829..5937968 17..156 100   Minus
3L 5933771..5933991 1061..1281 100 <- Minus
3L 5934054..5934334 780..1060 100 <- Minus
3L 5934405..5934693 491..779 100 <- Minus
3L 5937399..5937732 157..490 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:28 Download gff for BS16370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5926871..5927091 1061..1281 100 <- Minus
arm_3L 5927154..5927434 780..1060 100 <- Minus
arm_3L 5927505..5927793 491..779 100 <- Minus
arm_3L 5930499..5930832 157..490 100 <- Minus
arm_3L 5930929..5931068 17..156 100   Minus

BS16370.pep Sequence

Translation from 16 to 1281

> BS16370.pep
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNV*

BS16370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 421 CG33993-PA 1..421 1..421 2228 100 Plus
CG33993-PB 258 CG33993-PB 1..258 164..421 1330 100 Plus
PVRAP-PA 474 CG32406-PA 183..468 133..421 686 51.9 Plus
CG10479-PA 378 CG10479-PA 240..340 277..379 189 44.2 Plus
CG10479-PB 379 CG10479-PB 241..341 277..379 189 44.2 Plus