Clone Sequence Records
BS16370.3prime Sequence
887 bp (715 high quality bases) assembled on 2007-05-15
> BS16370.3prime
ATGGTCTAGAAAGCTTTCACACATTCAAATCGGCCATCATTTTGCGAAAG
TCGTTCAGCGAGCCATACATCTCGAAGTCCGCTCCCCCGTTTCCGGTTCC
GCCTGCGTAGGCGCCCTGCGATCGTTGCGATCGGGTACTAGGTGGGCGTG
GCAGGGTCAGCGGCACGGGCAACAGTTCCGGCATCACCGAGTGGTGCGTG
ATCAGCGCCTTCAGCGAACTGAACTCCTTGGTGAAGCCCTTTATCTTGTA
GCCCCTTTGCGTCCGCAGGATCAGATAGTGGGCCACTCGTGGTGAAGGTG
GTGGCACTCGCAGCGAGAGGGCGAAACATCCCGGCTTTGTGCTGCTCTGG
CGCACTAGAAACGCACCTGGACTCTGTCGGGACAGGGCCTCCAGGGATAT
TTCCCTGGGAATGCCCGCTTGAAACCAGGCGGCTCCCTTAAGCTCCTGCT
GCTCGGCTAGGCTGAGATTATCCAGGCGCAGGGCACTGTGGCCGGGAAAC
AATTTCGGACTGGAGTTGGCGCTGCACGTCTCTCTCAGATACTTTTTGCT
GGCGGCGGGCAGCTCCACCTGCAGCCGCTGGGTGGCACTCTCCAGTGCGG
ACAGTGACTGGCGGCAGGAGTCGCCGAACTTGCTGGCCACGTACTTGTCC
GGCTCGCAGATGGCCTCGTTCACATAGCCATCGGAGATGGTCTGAGTGGA
TCCACAGCCGGATCCGGAGGTCAGCGAGGAGCCGCAGGTGCTGTGCATCA
GGGGGCGGCTGTCCTCGGTTCCCCGCAGCAGTCCAATGCCCATGGTCAGG
CGTTTCACCAGCGGCGGCTTATCCACCAAACGACGGCAATTATTCATTTC
TGTGGGCGAATTATCCTCCTCGGAGCTGGGCGAGCGC
BS16370.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 1266 | CG33993-RA | 396..1266 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 2404 | CG33993-RA | 800..1670 | 887..17 | 4355 | 100 | Minus |
CG33993-RB | 1316 | CG33993-RB | 118..911 | 810..17 | 3970 | 100 | Minus |
PVRAP-RA | 2919 | CG32406-RA | 1810..2118 | 445..141 | 295 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5934405..5934694 | 520..809 | 1450 | 100 | Plus |
3L | 28110227 | 3L | 5934053..5934335 | 238..520 | 1415 | 100 | Plus |
3L | 28110227 | 3L | 5933770..5933993 | 17..240 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 5937397..5937477 | 807..887 | 405 | 100 | Plus |
3L | 28110227 | 3L | 6025442..6025509 | 214..147 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:12:48 has no hits.
BS16370.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:36:53 Download gff for
BS16370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-PA | 396..1266 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:29 Download gff for
BS16370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 800..1675 | 12..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:53 Download gff for
BS16370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 800..1675 | 12..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:53 Download gff for
BS16370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5933765..5933991 | 12..238 | 99 | <- | Plus |
3L | 5934054..5934334 | 239..519 | 100 | <- | Plus |
3L | 5934405..5934693 | 520..808 | 100 | <- | Plus |
3L | 5937399..5937477 | 809..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:29 Download gff for
BS16370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5927505..5927793 | 520..808 | 100 | <- | Plus |
arm_3L | 5926865..5927091 | 12..238 | 99 | <- | Plus |
arm_3L | 5927154..5927434 | 239..519 | 100 | <- | Plus |
arm_3L | 5930499..5930577 | 809..887 | 100 | | Plus |
BS16370.5prime Sequence
858 bp (837 high quality bases) assembled on 2007-05-15
> BS16370.5prime
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCT
BS16370.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 1266 | CG33993-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 2404 | CG33993-RA | 405..1246 | 17..858 | 4210 | 100 | Plus |
CG33993-RB | 1316 | CG33993-RB | 118..487 | 489..858 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5937397..5937735 | 492..154 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5934405..5934694 | 779..490 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 5937829..5937968 | 156..17 | 700 | 100 | Minus |
3L | 28110227 | 3L | 5934256..5934335 | 858..779 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:40 has no hits.
BS16370.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:30:53 Download gff for
BS16370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:15:41 Download gff for
BS16370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 393..1246 | 6..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:27 Download gff for
BS16370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 393..1246 | 6..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:27 Download gff for
BS16370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5934256..5934334 | 780..858 | 100 | <- | Minus |
3L | 5934405..5934693 | 491..779 | 100 | <- | Minus |
3L | 5937399..5937732 | 157..490 | 100 | <- | Minus |
3L | 5937829..5937980 | 6..156 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:15:41 Download gff for
BS16370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5927356..5927434 | 780..858 | 100 | <- | Minus |
arm_3L | 5927505..5927793 | 491..779 | 100 | <- | Minus |
arm_3L | 5930499..5930832 | 157..490 | 100 | <- | Minus |
arm_3L | 5930929..5931080 | 6..156 | 96 | | Minus |
BS16370.complete Sequence
1298 bp assembled on 2007-05-07
GenBank Submission: FJ638134
> BS16370.complete
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCTTAAGGGAGCCGCCTGGTTTCAAGCGGGCATTCCCAGGGAAAT
ATCCCTGGAGGCCCTGTCCCGACAGAGTCCAGGTGCGTTTCTAGTGCGCC
AGAGCAGCACAAAGCCGGGATGTTTCGCCCTCTCGCTGCGAGTGCCACCA
CCTTCACCACGAGTGGCCCACTATCTGATCCTGCGGACGCAAAGGGGCTA
CAAGATAAAGGGCTTCACCAAGGAGTTCAGTTCGCTGAAGGCGCTGATCA
CGCACCACTCGGTGATGCCGGAACTGTTGCCCGTGCCGCTGACCCTGCCA
CGCCCACCTAGTACCCGATCGCAACGATCGCAGGGCGCCTACGCAGGCGG
AACCGGAAACGGGGGAGCGGACTTCGAGATGTATGGCTCGCTGAACGACT
TTCGCAAAATGATGGCCGATTTGAATGTGTGAAAGCTTTCTAGACCAT
BS16370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 1266 | CG33993-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG33993-RB | 777 | CG33993-PB | 1..777 | 506..1282 | 3885 | 100 | Plus |
PVRAP-RA | 1425 | CG32406-PA | 1006..1307 | 854..1152 | 260 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 2404 | CG33993-RA | 405..1670 | 17..1282 | 6330 | 100 | Plus |
CG33993-RB | 1316 | CG33993-RB | 118..911 | 489..1282 | 3970 | 100 | Plus |
PVRAP-RA | 2919 | CG32406-RA | 1810..2111 | 854..1152 | 260 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5937397..5937735 | 492..154 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5934405..5934694 | 779..490 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 5934053..5934335 | 1061..779 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 5933770..5933993 | 1282..1059 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 5937829..5937968 | 156..17 | 700 | 100 | Minus |
3L | 28110227 | 3L | 6025442..6025509 | 1085..1152 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:41 has no hits.
BS16370.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:38 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:00 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 390..1672 | 6..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:28 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 405..1669 | 17..1281 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:38 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 390..1672 | 6..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:25 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 405..1669 | 17..1281 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:25 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5937829..5937968 | 17..156 | 100 | | Minus |
3L | 5933771..5933991 | 1061..1281 | 100 | <- | Minus |
3L | 5934054..5934334 | 780..1060 | 100 | <- | Minus |
3L | 5934405..5934693 | 491..779 | 100 | <- | Minus |
3L | 5937399..5937732 | 157..490 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:28 Download gff for
BS16370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5926871..5927091 | 1061..1281 | 100 | <- | Minus |
arm_3L | 5927154..5927434 | 780..1060 | 100 | <- | Minus |
arm_3L | 5927505..5927793 | 491..779 | 100 | <- | Minus |
arm_3L | 5930499..5930832 | 157..490 | 100 | <- | Minus |
arm_3L | 5930929..5931068 | 17..156 | 100 | | Minus |
BS16370.pep Sequence
Translation from 16 to 1281
> BS16370.pep
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNV*
BS16370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 421 | CG33993-PA | 1..421 | 1..421 | 2228 | 100 | Plus |
CG33993-PB | 258 | CG33993-PB | 1..258 | 164..421 | 1330 | 100 | Plus |
PVRAP-PA | 474 | CG32406-PA | 183..468 | 133..421 | 686 | 51.9 | Plus |
CG10479-PA | 378 | CG10479-PA | 240..340 | 277..379 | 189 | 44.2 | Plus |
CG10479-PB | 379 | CG10479-PB | 241..341 | 277..379 | 189 | 44.2 | Plus |