Clone Sequence Records
BS16372.3prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS16372.3prime
ATGGTCTAGAAAGCTTTTAAAAAACAAGGCCAAGCGTTGACGCAGTGCAG
CGGGACACAAGGACGACTTTAAGGGATCGGGGCTCCCGCCGTGCCGAAGT
GAGGAAGTGAGAGGGCAGACAGAGTGAGGGAGACGGGGCGACTACTTCTC
TGTATTCGCTGAGTTCCTGGCCCATATCGCATACCTCTTTATCCACTTTC
TCGGCAATCGTGTATCTTCTCACCTGACCGACATGCTCCTTCATGCCCAG
CCACTGTTTGTAGCTCATCGAGATGCCGCTGTTGCGCCACTTGTCGTAGA
TGGCCCTCTTTTCGGGATCGCACAAGGTTTCCTTGGCCTCCTTTAACTGC
TGGAACTTGGCCTCCGCCTCCTTGTCGCCGGAGTTCTTGTCGGGATGGTA
CTGAAGGGCCAGGACTTTGTACTCGGCCTGGATCTGCTCGGGCGATGAGT
TCTCATCGCAATGGAGCAGACCGTAGAAGTCCTCGTTGGGACTGCGCTTG
TAATTGATTATAGCATCAACGGCGCTCATGTCGACTGATAACT
BS16372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PC | 513 | jdp-RC | 1..513 | 529..17 | 2565 | 100 | Minus |
CG2239-PA | 588 | jdp-RA | 1..345 | 529..185 | 1725 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 1..306 | 529..224 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..614 | 529..16 | 2570 | 100 | Minus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 529..185 | 1725 | 100 | Minus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 529..224 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519439..30519765 | 16..342 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 30523227..30523330 | 340..443 | 520 | 100 | Plus |
3R | 32079331 | 3R | 30526243..30526329 | 443..529 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:19:51 has no hits.
BS16372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:08 Download gff for
BS16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PC | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:45 Download gff for
BS16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 8..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:28 Download gff for
BS16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 8..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:28 Download gff for
BS16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30519434..30519763 | 8..340 | 99 | <- | Plus |
3R | 30523228..30523329 | 341..442 | 100 | <- | Plus |
3R | 30526243..30526329 | 443..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:45 Download gff for
BS16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26345156..26345485 | 8..340 | 99 | <- | Plus |
arm_3R | 26348950..26349051 | 341..442 | 100 | <- | Plus |
arm_3R | 26351965..26352051 | 443..529 | 100 | | Plus |
BS16372.5prime Sequence
543 bp (543 high quality bases) assembled on 2007-05-15
> BS16372.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTTAAAAGCTTTCTAGACC
BS16372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PC | 513 | jdp-RC | 1..513 | 17..529 | 2565 | 100 | Plus |
CG2239-PA | 588 | jdp-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..614 | 17..530 | 2570 | 100 | Plus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519439..30519765 | 530..204 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:23:38 has no hits.
BS16372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:08 Download gff for
BS16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PC | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:08 Download gff for
BS16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:14:18 Download gff for
BS16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 17..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:14:18 Download gff for
BS16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30519434..30519763 | 206..538 | 99 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:08 Download gff for
BS16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26345156..26345485 | 206..538 | 99 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BS16372.complete Sequence
545 bp assembled on 2007-05-07
GenBank Submission: FJ638135
> BS16372.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTTAAAAGCTTTCTAGACCAT
BS16372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 513 | CG2239-PC | 1..513 | 17..529 | 2565 | 100 | Plus |
jdp-RA | 588 | CG2239-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 549 | CG2239-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..614 | 17..530 | 2570 | 100 | Plus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519439..30519765 | 530..204 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:41:05 has no hits.
BS16372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:39 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:06 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 103..621 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:06 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..611 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:39 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 103..621 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:49 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..611 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:49 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
3R | 30519442..30519763 | 206..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:06 Download gff for
BS16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
arm_3R | 26345164..26345485 | 206..527 | 100 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
BS16372.pep Sequence
Translation from 16 to 528
> BS16372.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVF*
BS16372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-PC | 170 | CG2239-PC | 1..170 | 1..170 | 890 | 100 | Plus |
jdp-PA | 195 | CG2239-PA | 1..115 | 1..115 | 611 | 100 | Plus |
jdp-PB | 182 | CG2239-PB | 1..120 | 1..120 | 553 | 86.7 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
DnaJ-1-PB | 334 | CG10578-PB | 3..72 | 16..86 | 152 | 40.8 | Plus |