Clone BS16372 Report

Search the DGRC for BS16372

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptjdp-RC
Protein status:BS16372.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16372.3prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS16372.3prime
ATGGTCTAGAAAGCTTTTAAAAAACAAGGCCAAGCGTTGACGCAGTGCAG
CGGGACACAAGGACGACTTTAAGGGATCGGGGCTCCCGCCGTGCCGAAGT
GAGGAAGTGAGAGGGCAGACAGAGTGAGGGAGACGGGGCGACTACTTCTC
TGTATTCGCTGAGTTCCTGGCCCATATCGCATACCTCTTTATCCACTTTC
TCGGCAATCGTGTATCTTCTCACCTGACCGACATGCTCCTTCATGCCCAG
CCACTGTTTGTAGCTCATCGAGATGCCGCTGTTGCGCCACTTGTCGTAGA
TGGCCCTCTTTTCGGGATCGCACAAGGTTTCCTTGGCCTCCTTTAACTGC
TGGAACTTGGCCTCCGCCTCCTTGTCGCCGGAGTTCTTGTCGGGATGGTA
CTGAAGGGCCAGGACTTTGTACTCGGCCTGGATCTGCTCGGGCGATGAGT
TCTCATCGCAATGGAGCAGACCGTAGAAGTCCTCGTTGGGACTGCGCTTG
TAATTGATTATAGCATCAACGGCGCTCATGTCGACTGATAACT

BS16372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PC 513 jdp-RC 1..513 529..17 2565 100 Minus
CG2239-PA 588 jdp-RA 1..345 529..185 1725 100 Minus
CG2239-PB 549 jdp-RB 1..306 529..224 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..614 529..16 2570 100 Minus
jdp-RA 1960 CG2239-RA 101..445 529..185 1725 100 Minus
jdp-RB 1921 CG2239-RB 101..406 529..224 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519439..30519765 16..342 1635 100 Plus
3R 32079331 3R 30523227..30523330 340..443 520 100 Plus
3R 32079331 3R 30526243..30526329 443..529 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:19:51 has no hits.

BS16372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:08 Download gff for BS16372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PC 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:45 Download gff for BS16372.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 8..529 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:28 Download gff for BS16372.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 8..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:28 Download gff for BS16372.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30519434..30519763 8..340 99 <- Plus
3R 30523228..30523329 341..442 100 <- Plus
3R 30526243..30526329 443..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:45 Download gff for BS16372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26345156..26345485 8..340 99 <- Plus
arm_3R 26348950..26349051 341..442 100 <- Plus
arm_3R 26351965..26352051 443..529 100   Plus

BS16372.5prime Sequence

543 bp (543 high quality bases) assembled on 2007-05-15

> BS16372.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTTAAAAGCTTTCTAGACC

BS16372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PC 513 jdp-RC 1..513 17..529 2565 100 Plus
CG2239-PA 588 jdp-RA 1..345 17..361 1725 100 Plus
CG2239-PB 549 jdp-RB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..614 17..530 2570 100 Plus
jdp-RA 1960 CG2239-RA 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519439..30519765 530..204 1635 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:23:38 has no hits.

BS16372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:08 Download gff for BS16372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PC 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:08 Download gff for BS16372.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 17..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:14:18 Download gff for BS16372.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 17..538 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:14:18 Download gff for BS16372.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30519434..30519763 206..538 99 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:08 Download gff for BS16372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26345156..26345485 206..538 99 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BS16372.complete Sequence

545 bp assembled on 2007-05-07

GenBank Submission: FJ638135

> BS16372.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTTAAAAGCTTTCTAGACCAT

BS16372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 513 CG2239-PC 1..513 17..529 2565 100 Plus
jdp-RA 588 CG2239-PA 1..345 17..361 1725 100 Plus
jdp-RB 549 CG2239-PB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..614 17..530 2570 100 Plus
jdp-RA 1960 CG2239-RA 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519439..30519765 530..204 1635 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:41:05 has no hits.

BS16372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:39 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:06 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 103..621 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:06 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..611 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:39 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 103..621 17..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:49 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..611 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:49 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
3R 30519442..30519763 206..527 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:06 Download gff for BS16372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26351965..26352051 17..103 100   Minus
arm_3R 26345164..26345485 206..527 100 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus

BS16372.pep Sequence

Translation from 16 to 528

> BS16372.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVF*

BS16372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PC 170 CG2239-PC 1..170 1..170 890 100 Plus
jdp-PA 195 CG2239-PA 1..115 1..115 611 100 Plus
jdp-PB 182 CG2239-PB 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus