Clone Sequence Records
BS16373.complete Sequence
2228 bp assembled on 2009-12-07
GenBank Submission: KX803368
> BS16373.complete
GAAGTTATCAGTCGACATGATACGGGCACCGCTAGTCAAGGCGCTGGGCG
CTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCAGC
GCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTCTT
TGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCAGG
CTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAACGT
CTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAGAG
TCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCGCA
TCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGGAG
TTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCAGGGCGG
CGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATCCC
GCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGACAAGGAC
ATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACTGCACCCG
CTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGTTGATGACCTGGGCACCA
CTGGCCGTGGCAACGACATGCAGATCGGCACCTACGTGGAGAAGCTCTTC
CTTACCGAACTGTCCGGCAACGTGATCGACCTGTGCCCCGTGGGAGCGCT
GACCAACAAGCCCTACAGTTTTGTGGCCCGTCCCTGGGAGATCCGTAAGG
TGAGCAGCATCGATGTGCTGGACGCCGTCGGCAGCAACATTGTCGTCAGC
ACCCGCACCAATGAGGTGCTGCGCATCCTGCCCCGTGAGAACGAGGACGT
CAACGAGGAATGGCTTGCTGACAAATCGCGCTTCGCCTGCGACGGTCTGA
AGCGCCAGCGCCTGGTGGCTCCCATGGTGCGCATGCCCAACGGCGAACTA
CAGGCCGTAGAGTGGGAGGGTGCCCTCATCGCCGTGGCCAAGGCCATTAA
GGCAGCCGGTGGACAGATTGCCGGTATTTCTGGCCAACTTGCCGACCTGG
AGGCTCAGGTGGCCCTGAAGGATCTGCTGAACCGTCTGGGCAGCGAAGTG
GTCGCCACTGAACAAGGATTTATTGCCGGAGGCACCGACAACCGTGCTAA
TTACCTCTTGAACAGCACCATTGCCGGTTTGGAGGAGGCCGACGCCGTTC
TCCTGGTGGGCACCAATCCCCGTTACGAGGCTCCATTGGTCAACACCCGT
TTGCGCAAGGCCTATGTGCACAACGAACTGCAGATTGCCTCGATTGGACC
CAAGATCGATCTGTCCTACGACCACGAGAACCTTGGCGCCGATGCCGCTT
TAGTCAAGGACGTGTGCTCCGGAGCTCATGCCTTCTCCAAGGTCTTGGAG
GGTGCCAAGAAGCCGGCCATCATTATTGGAGCCGATTTGTTGGAGCGTGC
CGATGGTGCCGCCATTCACGCCACCGTTGCCGAGTACTGCAAGAAGCTGA
AGAAGCCGAACTGGAACCCCTTCAATGTGCTGCAGACCAACGCCGCCCAG
GTGGGCGCCCTCGATGTGGGCTACAAGGCCGGTGCACAGACCGCTGTGAA
GGCTCAGCCCAAGGTGCTGTTCCTGTTGAACGCCGACGCTGGCAAGGTGA
CTCGCGAGCAGCTGCCCAAGGACTGCTTCGTGGTGTACATTGGATCGCAT
GGTGACAACGGCGCCTCCATTGCCGATGCCGTTCTGCCTGGTGCCGCCTA
CACAGAGAAGCAGGGCATCTACGTGAACACGGAGGGCAGGCCGCAGCAGA
CGCTGCCTGGTGTTTCGCCACCGGGTATGGCTCGCGAGGACTGGAAGATC
CTGCGCGCTCTGTCCGAGGTGGTGGGCAAGCCGCTGCCGTACGACAACCT
GGACGAGCTGCGCAACCGTCTGGAGGATGTGGCGCCACATCTAACGCGCC
TGGGCCAATTGGAGCCAGCCGGCGATGCCGGAGCAGCGGGCACTATTAGC
AAATCCATCGGCGGTGGCGCCATCGATATTAAGCTAAAGGAGCTGCGCGA
CTACTTCATGACCGACGCCATTTCGCGCGCCTCGCCCACCATGGCCAAGT
GCATATCGGCGGTCAACAAGCAGCAGCGGGAGAACGAGGCCAAGCAGAGT
GTGGCTATCTAGAAGCTTTCTAGACCAT
BS16373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2196 | CG2286-PB | 1..2196 | 17..2212 | 10980 | 100 | Plus |
| ND75-RA | 2196 | CG2286-PA | 1..2196 | 17..2212 | 10980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 69..2264 | 17..2212 | 10980 | 100 | Plus |
| ND75-RA | 2571 | CG2286-RA | 97..2292 | 17..2212 | 10980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8249703..8250730 | 1558..531 | 5140 | 100 | Minus |
| X | 23542271 | X | 8249154..8249643 | 2047..1558 | 2450 | 100 | Minus |
| X | 23542271 | X | 8250798..8251131 | 531..198 | 1670 | 100 | Minus |
| X | 23542271 | X | 8251200..8251383 | 200..17 | 920 | 100 | Minus |
| X | 23542271 | X | 8248930..8249094 | 2212..2048 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:28:47 has no hits.
BS16373.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:30 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 267..2462 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:11 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..2292 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:27 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 267..2462 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:21 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..2292 | 17..2212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:21 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8248930..8249094 | 2048..2212 | 100 | <- | Minus |
| X | 8249154..8249642 | 1559..2047 | 100 | <- | Minus |
| X | 8249703..8250729 | 532..1558 | 100 | <- | Minus |
| X | 8250798..8251129 | 200..531 | 100 | <- | Minus |
| X | 8251201..8251383 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:11 Download gff for
BS16373.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8142963..8143127 | 2048..2212 | 100 | <- | Minus |
| arm_X | 8143187..8143675 | 1559..2047 | 100 | <- | Minus |
| arm_X | 8143736..8144762 | 532..1558 | 100 | <- | Minus |
| arm_X | 8144831..8145162 | 200..531 | 100 | <- | Minus |
| arm_X | 8145234..8145416 | 17..199 | 100 | | Minus |
BS16373.3prime Sequence
898 bp (861 high quality bases) assembled on 2007-05-15
> BS16373.3prime
ATGGTCTAGAAAGCTTCTAGATAGCCACACTCTGCTTGGCCTCGTTCTCC
CGCTGCTGCTTGTTGACCGCCGATATGCACTTGGCCATGGTGGGCGAGGC
GCGCGAAATGGCGTCGGTCATGAAGTAGTCGCGCAGCTCCTTTAGCTTAA
TATCGATGGCGCCACCGCCGATGGATTTGCTAATAGTGCCCGCTGCTCCG
GCATCGCCGGCTGGCTCCAATTGGCCCAGGCGCGTTAGATGTGGCGCCAC
ATCCTCCAGACGGTTGCGCAGCTCGTCCAGGTTGTCGTACGGCAGCGGCT
TGCCCACCACCTCGGACAGAGCGCGCAGGATCTTCCAGTCCTCGCGAGCC
ATACCCGGTGGCGAAACACCAGGCAGCGTCTGCTGCGGCCTGCCCTCCGT
GTTCACGTAGATGCCCTGCTTCTCTGTGTAGGCGGCACCAGGCAGAACGG
CATCGGCAATGGAGGCGCCGTTGTCACCATGCGATCCAATGTACACCACG
AAGCAGTCCTTGGGCAGCTGCTCGCGAGTCACCTTGCCAGCGTCGGCGTT
CAACAGGAACAGCACCTTGGGCTGAGCCTTCACAGCGGTCTGTGCACCGG
CCTTGTAGCCCACATCGAGGGCGCCCACCTGGGCGGCGTTGGTCTGCAGC
ACATTGAAGGGGTTCCAGTTCGGCTTCTTCAGCTTCTTGCAGTACTCGGC
AACGGTGGCGTGAATGGCGGCACCATCGGCACGCTCCAACAAATCGGCTC
CAATAATGATGGCCGGCTTCTTGGCACCCTCCAAGACCTTGGAGAAGGCA
TGAGCTCCGGAGCACACGTCCTTGACTAAAGCGGCATCGGCGCCAAGGTT
CTCGTGGTCGTAAGACAGATCGATCTTGGGTCCAATCGAGGCAATCTG
BS16373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2286-PA | 2196 | ND75-RA | 1315..2196 | 898..17 | 4385 | 99.8 | Minus |
| CG2286-PB | 2196 | ND75-RB | 1315..2196 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 1383..2264 | 898..17 | 4395 | 99.9 | Minus |
| ND75-RA | 2571 | CG2286-RA | 1411..2292 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8249154..8249643 | 182..671 | 2450 | 100 | Plus |
| X | 23542271 | X | 8249703..8249930 | 671..898 | 1125 | 99.6 | Plus |
| X | 23542271 | X | 8248930..8249094 | 17..181 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:37:33 has no hits.
BS16373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:34:21 Download gff for
BS16373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2286-PB | 1315..2196 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:16 Download gff for
BS16373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 1411..2294 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:25 Download gff for
BS16373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 1411..2294 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:25 Download gff for
BS16373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8248926..8249094 | 13..181 | 98 | <- | Plus |
| X | 8249154..8249642 | 182..670 | 100 | <- | Plus |
| X | 8249703..8249930 | 671..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:16 Download gff for
BS16373.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8142959..8143127 | 13..181 | 98 | <- | Plus |
| arm_X | 8143187..8143675 | 182..670 | 100 | <- | Plus |
| arm_X | 8143736..8143963 | 671..898 | 99 | | Plus |
BS16373.5prime Sequence
774 bp (711 high quality bases) assembled on 2007-05-15
> BS16373.5prime
GAAGTTATCAGTCGACATGATACGGGCACCGCTAGTCAAGGCGCTGGGCG
CTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCAGC
GCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTCTT
TGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCAGG
CTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAACGT
CTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAGAG
TCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCGCA
TCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGGAG
TTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCATGACGG
CGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATCCC
GCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGACAAGGAC
ATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACTGCACCCG
CTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGTTGATGACCTGGGCACCA
CTGGCCGTGGCAACGACATGCAGATCGGCACCTACGTGGAGAAGCTCTTC
CTTACCGAACTGTCCGGCAACGTGATCGACTTGTGCCCCGTGTGAGCGCT
GACCAACAAGCCCTACAGTTTTGT
BS16373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2286-PA | 2196 | ND75-RA | 1..758 | 17..774 | 3690 | 99.4 | Plus |
| CG2286-PB | 2196 | ND75-RB | 1..758 | 17..774 | 3690 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 69..826 | 17..774 | 3730 | 99.5 | Plus |
| ND75-RA | 2571 | CG2286-RA | 97..854 | 17..774 | 3730 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8250798..8251131 | 531..198 | 1640 | 99.4 | Minus |
| X | 23542271 | X | 8250487..8250730 | 774..531 | 1190 | 99.2 | Minus |
| X | 23542271 | X | 8251200..8251383 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:19:51 has no hits.
BS16373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:28:19 Download gff for
BS16373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2286-PB | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:55:22 Download gff for
BS16373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..854 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:59 Download gff for
BS16373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..854 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:59 Download gff for
BS16373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8250487..8250729 | 532..774 | 99 | <- | Minus |
| X | 8250798..8251129 | 200..531 | 99 | <- | Minus |
| X | 8251201..8251391 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:55:22 Download gff for
BS16373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8144520..8144762 | 532..774 | 99 | <- | Minus |
| arm_X | 8144831..8145162 | 200..531 | 99 | <- | Minus |
| arm_X | 8145234..8145424 | 9..199 | 97 | | Minus |
BS16373.pep Sequence
Translation from 16 to 2211
> BS16373.pep
MIRAPLVKALGALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIP
VQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA
ACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQ
DQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFA
SEIAGVDDLGTTGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPY
SFVARPWEIRKVSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWL
ADKSRFACDGLKRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQ
IAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNS
TIAGLEEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLS
YDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAI
HATVAEYCKKLKKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKV
LFLLNADAGKVTREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQG
IYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRN
RLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTD
AISRASPTMAKCISAVNKQQRENEAKQSVAI*
BS16373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-PB | 731 | CG2286-PB | 1..731 | 1..731 | 3745 | 100 | Plus |
| ND75-PA | 731 | CG2286-PA | 1..731 | 1..731 | 3745 | 100 | Plus |
