Clone BS16376 Report

Search the DGRC for BS16376

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptFlo2-RB
Protein status:BS16376.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16376.3prime Sequence

920 bp (821 high quality bases) assembled on 2007-05-15

> BS16376.3prime
ATGGTCTAGAAAGCTTTCACGCCTTGGCCCCCGGTATCTTGGACAGAACC
TTGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGC
CACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGA
CAATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTG
GGCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTT
GTACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCA
ACTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCC
TCGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGT
CTGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGA
GCTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTG
CGTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCG
GATCTTGGCTGCCTGCAGCTCGTAGGCCAACTGCGATTCGGCCTTGGCCG
TGTTGATCTCCTGATCGAAATTGGCCTTCTGCAGCTTGTACATCCTGGTG
TTGTCCTCGATTTTCGTGTCCGTCGAGTATTTCACATCCATGGCGCTCTT
TTCGCACTCCGCCTCACGGATACCGGCATCTCGATTGGCCTCCGCCACGC
CGGCATCTGCATCCCGCTTGACCACGGCGGTCTGGGCCTTGCCCAACGAG
GCCAGGTACTGCACATCATCGTAGACGTCCTTGATCGTAAACGAGAGAAT
CTCGATGCCCTACGACCCACGTCCGGTGCGGCCACCTCGCGCACAAGGCA
GCGAATTGGTCGCGGTCCTT

BS16376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PA 1317 Flo-2-RA 474..1317 860..17 4220 100 Minus
CG32593-PB 1278 Flo-2-RB 435..1278 860..17 4220 100 Minus
CG32593-PE 1317 Flo-2-RE 474..1317 860..17 4220 100 Minus
CG32593-PF 1278 Flo-2-RF 435..1278 860..17 4220 100 Minus
CG32593-PC 1206 Flo-2-RC 363..1206 860..17 4220 100 Minus
CG32593-PD 846 Flo-2-RD 3..846 860..17 4220 100 Minus
CG32593-PA 1317 Flo-2-RA 439..472 894..861 170 100 Minus
CG32593-PB 1278 Flo-2-RB 400..433 894..861 170 100 Minus
CG32593-PE 1317 Flo-2-RE 439..472 894..861 170 100 Minus
CG32593-PF 1278 Flo-2-RF 400..433 894..861 170 100 Minus
CG32593-PC 1206 Flo-2-RC 328..361 894..861 170 100 Minus
CG32593-PA 1317 Flo-2-RA 412..438 920..894 135 100 Minus
CG32593-PB 1278 Flo-2-RB 373..399 920..894 135 100 Minus
CG32593-PE 1317 Flo-2-RE 412..438 920..894 135 100 Minus
CG32593-PF 1278 Flo-2-RF 373..399 920..894 135 100 Minus
CG32593-PC 1206 Flo-2-RC 301..327 920..894 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 911..1818 920..15 4490 99.8 Minus
Flo2-RA 2819 CG32593-RA 558..1465 920..15 4490 99.8 Minus
Flo2-RH 2429 CG32593-RH 168..1075 920..15 4490 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930773..14931314 920..381 2610 99.6 Minus
X 23542271 X 14931802..14931985 380..197 920 100 Minus
X 23542271 X 14932046..14932229 198..15 920 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:59:45 has no hits.

BS16376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:13 Download gff for BS16376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PD 1..846 17..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:01 Download gff for BS16376.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RG 501..1412 7..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:18 Download gff for BS16376.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RH 168..1079 7..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:18 Download gff for BS16376.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14930773..14931314 381..920 99 -> Minus
X 14931802..14931985 197..380 100 -> Minus
X 14932048..14932233 7..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:01 Download gff for BS16376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14824806..14825347 381..920 99 -> Minus
arm_X 14825835..14826018 197..380 100 -> Minus
arm_X 14826081..14826266 7..196 97   Minus

BS16376.5prime Sequence

899 bp (807 high quality bases) assembled on 2007-05-15

> BS16376.5prime
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGGTATCCGTGAGGC
GGAGTGCGAAAAGAGCGCCATGGATGTGAAATACTCGACGGACACGAAAA
TCGAGGACAACACCAGGATGTACAAGCTGCAGAAGGCCAATTTCGATCAG
GAGATCAACACGGCCAAGGCCGAATCGCAGTTGGCCTACGAGCTGCAGGC
AGCCAAGATCCGCCAGCGCATCCGTAACGAGGAGATTCAGATCGAGGTGG
TGGAGCGACGNCAGCAGATCGAGATTGAGTCGCANGAAGTGCAGCGCAAG
GATCGCGAGCTCACTGGCACAGTCAAGCTGCCCGCCGAGGCCGAAGCCT

BS16376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PB 1278 Flo-2-RB 1..878 17..894 4327 99.6 Plus
CG32593-PF 1278 Flo-2-RF 1..878 17..894 4327 99.6 Plus
CG32593-PA 1317 Flo-2-RA 275..917 252..894 3152 99.5 Plus
CG32593-PE 1317 Flo-2-RE 275..917 252..894 3152 99.5 Plus
CG32593-PC 1206 Flo-2-RC 164..806 252..894 3152 99.5 Plus
CG32593-PD 846 Flo-2-RD 1..446 449..894 2167 99.3 Plus
CG32593-PA 1317 Flo-2-RA 1..237 17..253 1185 100 Plus
CG32593-PE 1317 Flo-2-RE 1..237 17..253 1185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RB 2780 CG32593-RB 147..1029 17..899 4363 99.5 Plus
Flo2-RF 2892 CG32593-RF 259..1141 17..899 4363 99.5 Plus
Flo2-RL 2780 CG32593-RL 147..1029 17..899 4363 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931283 362..899 2638 99.3 Plus
X 23542271 X 14924220..14924414 60..254 975 100 Plus
X 23542271 X 14926764..14926875 252..363 560 100 Plus
X 23542271 X 14840971..14841022 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:23:53 has no hits.

BS16376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:13 Download gff for BS16376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PF 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:11 Download gff for BS16376.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 141..1029 12..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:15:52 Download gff for BS16376.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 141..1029 12..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:15:52 Download gff for BS16376.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14926766..14926874 254..362 100 -> Plus
X 14840965..14841019 12..65 96 -> Plus
X 14924226..14924413 66..253 100 -> Plus
X 14930747..14931283 363..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:11 Download gff for BS16376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14734998..14735052 12..65 96 -> Plus
arm_X 14818259..14818446 66..253 100 -> Plus
arm_X 14820799..14820907 254..362 100 -> Plus
arm_X 14824780..14825316 363..899 99   Plus

BS16376.complete Sequence

1310 bp assembled on 2007-05-07

GenBank Submission: MN238598

> BS16376.complete
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGGTATCCGTGAGGC
GGAGTGCGAAAAGAGCGCCATGGATGTGAAATACTCGACGGACACGAAAA
TCGAGGACAACACCAGGATGTACAAGCTGCAGAAGGCCAATTTCGATCAG
GAGATCAACACGGCCAAGGCCGAATCGCAGTTGGCCTACGAGCTGCAGGC
AGCCAAGATCCGCCAGCGCATCCGTAACGAGGAGATTCAGATCGAGGTGG
TGGAGCGACGCAAGCAGATCGAGATTGAGTCGCAGGAAGTGCAGCGCAAG
GATCGCGAGCTCACTGGCACAGTCAAGCTGCCCGCCGAGGCCGAGGCCTT
CCGCCTCCAGACCCTTGCGCAGGCCAAGCAATGTCAGACCATCGAGGGTG
CCCGTGCCGAGGCGGAGCGCATACGCAAGATCGGATCGGCGGAGGCCCAT
GCCATCGAGTTGGTGGGCAAGGCGGAGGCGGAACGCATGCGGATGAAGGC
CCATGTGTACAAGCAGTACGGCGATGCAGCAATTATGAATATTGTACTCG
AATCGCTGCCCAAGATTGCCGCTGAGGTGGCTGCACCACTGGCCAAAACC
GATGAGATTGTCCTAATTGGCGGCAACGATAATATAACCAACGATGTGAC
TCGCTTGGTGGCCCAGCTACCGCCATCGATCAACGCCTTGACCGGAGTGG
ATTTGTCCAAGGTTCTGTCCAAGATACCGGGGGCCAAGGCGTGAAAGCTT
TCTAGACCAT

BS16376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RL 1323 CG32593-PL 1..1280 17..1296 6400 100 Plus
Flo2-RB 1278 CG32593-PB 1..1278 17..1294 6390 100 Plus
Flo2-RF 1278 CG32593-PF 1..1278 17..1294 6390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RB 2780 CG32593-RB 147..1426 17..1296 6400 100 Plus
Flo2-RF 2892 CG32593-RF 259..1538 17..1296 6400 100 Plus
Flo2-RL 2780 CG32593-RL 147..1426 17..1296 6400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931314 362..930 2845 100 Plus
X 23542271 X 14924220..14924414 60..254 975 100 Plus
X 23542271 X 14931802..14931985 931..1114 920 100 Plus
X 23542271 X 14932046..14932229 1113..1296 920 100 Plus
X 23542271 X 14926764..14926875 252..363 560 100 Plus
X 23542271 X 14840971..14841022 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:57:29 has no hits.

BS16376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:20 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..1278 17..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:03 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 145..1421 17..1293 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:04 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 147..1423 17..1293 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:20 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 139..1428 12..1304 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:13 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 147..1423 17..1293 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:13 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
X 14840971..14841019 17..65 100 -> Plus
X 14924226..14924413 66..253 100 -> Plus
X 14926766..14926874 254..362 100 -> Plus
X 14930747..14931314 363..930 100 -> Plus
X 14931802..14931985 931..1114 100 -> Plus
X 14932048..14932226 1115..1293 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:04 Download gff for BS16376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14735004..14735052 17..65 100 -> Plus
arm_X 14818259..14818446 66..253 100 -> Plus
arm_X 14820799..14820907 254..362 100 -> Plus
arm_X 14824780..14825347 363..930 100 -> Plus
arm_X 14825835..14826018 931..1114 100 -> Plus
arm_X 14826081..14826259 1115..1293 100   Plus

BS16376.pep Sequence

Translation from 16 to 1293

> BS16376.pep
MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVM
TLNPMCENVETSQGVPLTVTGVAQCKIMKADELLGTASEQFLGKSVKEIK
QTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEIL
SFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKS
AMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQ
RIRNEEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTL
AQAKQCQTIEGARAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQ
YGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDNITNDVTRLVAQ
LPPSINALTGVDLSKVLSKIPGAKA*

BS16376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PB 425 CG32593-PB 1..425 1..425 2120 100 Plus
Flo2-PF 425 CG32593-PF 1..425 1..425 2120 100 Plus
Flo2-PL 440 CG32593-PL 1..425 1..425 2120 100 Plus
Flo2-PI 435 CG32593-PI 1..435 1..425 2099 97.7 Plus
Flo2-PA 438 CG32593-PA 1..438 1..425 2096 97 Plus