Clone Sequence Records
BS16383.3prime Sequence
905 bp (814 high quality bases) assembled on 2007-05-15
> BS16383.3prime
ATGGTCTAGAAAGCTTTCATTCATCCCAGAGGCACTGTTGTTTCTGCCGC
ACATAATAGGTGAACTGTGTGCACTTGCGGCAGGTCTTGATGCCGCAGCG
ATAATTCGTCGGCTGTGCCTGCTGCTGGGCGCCCGACGAGTCCGCTCCGG
CGACTCCCTTGCCCTTGCAGTACTTGAGCCCGCAGGGATACCAGCCGATG
CAGGTCTCCAGGTTGCACAGGCAGGGCGCCCACAGGCTGCTCACCTCGTT
GCAGCGCGTCGAGAGCGTGTCCGGGAACTTTTCCGTGGCGGCCTCCAGGC
TGGAAATCGAGGAGCCTGGTAGCTCCGCCCAAGCTTTAAGGTCCACATCC
CGGACATAGGTGGCGTCCATGGCCTCGGCGCAGAGTCCCTGCAGATGTCT
GGTGATGGGCAGCGAGCGGTTGAGCTGTACCCAGCTGCTCATGGTGAAGG
TCTCACGGCCCTTGTCCTCCTCGGGAGTGCGGATGGTGTGCGGATTCTTC
TGGCGCAGCTTGGCCATTGCCGCCGAGGAGATGAAGTCGCCCTTGTTGAA
CTTGGTTGCGAAGCACATGACCTGGTACTGGCTCTGGCCACGCTCCTCCT
CGCCGAGAACCAGAGCCTTGAGGATTTGAACCTCATTGCGAAAGTCGATG
ACCTGGGTGATGAGCGTTCCGTCGGTCTTCTGAAACTCCAGCGTTATCAG
GTCCTCGCCAATGTTGGAGGTAATACTCTCCTGGATCACCTCGCCGCCCT
GATTTTGGACGTTAATGAGCAGCTGGGAGTGGGCGAATGCGTCCGCGTTC
ATCACTAAGTTGCACAGCANGAACCACAGAAACGCGCGACTGTGCTTGAA
ATAGTGATTTTTACTGACGACGCGACCCGCACAATTGCCGTGCGCTGGTG
TTCGA
BS16383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9884-PA | 999 | oaf-RA | 139..999 | 877..17 | 4236 | 99.6 | Minus |
CG9884-PB | 999 | oaf-RB | 139..999 | 877..17 | 4236 | 99.6 | Minus |
CG9884-PC | 999 | oaf-RC | 139..999 | 877..17 | 4236 | 99.6 | Minus |
CG9884-PD | 1464 | oaf-RD | 139..999 | 877..17 | 4236 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 186..1074 | 905..17 | 4359 | 99.4 | Minus |
oaf-RC | 1734 | CG9884-RC | 186..1074 | 905..17 | 4359 | 99.4 | Minus |
oaf-RB | 2831 | CG9884-RB | 186..1074 | 905..17 | 4359 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 634..315 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 2496396..2496697 | 318..17 | 1495 | 99.7 | Minus |
2L | 23513712 | 2L | 2493140..2493297 | 905..748 | 704 | 96.2 | Minus |
2L | 23513712 | 2L | 2495371..2495488 | 751..634 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:48:54 has no hits.
BS16383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:22 Download gff for
BS16383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9884-PD | 112..999 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:02 Download gff for
BS16383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 187..1074 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:30:10 Download gff for
BS16383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 187..1074 | 17..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:30:10 Download gff for
BS16383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2493141..2493296 | 749..904 | 97 | -> | Minus |
2L | 2495374..2495487 | 635..748 | 100 | -> | Minus |
2L | 2495570..2495888 | 316..634 | 100 | -> | Minus |
2L | 2496399..2496697 | 17..315 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:02 Download gff for
BS16383.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2495570..2495888 | 316..634 | 100 | -> | Minus |
arm_2L | 2493141..2493296 | 749..904 | 97 | -> | Minus |
arm_2L | 2495374..2495487 | 635..748 | 100 | -> | Minus |
arm_2L | 2496399..2496697 | 17..315 | 99 | | Minus |
BS16383.5prime Sequence
814 bp (813 high quality bases) assembled on 2007-05-15
> BS16383.5prime
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTG
BS16383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9884-PA | 999 | oaf-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG9884-PB | 999 | oaf-RB | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG9884-PC | 999 | oaf-RC | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG9884-PD | 1464 | oaf-RD | 1..798 | 17..814 | 3965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 76..873 | 17..814 | 3975 | 99.9 | Plus |
oaf-RC | 1734 | CG9884-RC | 76..873 | 17..814 | 3975 | 99.9 | Plus |
oaf-RB | 2831 | CG9884-RB | 76..873 | 17..814 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 398..717 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2493030..2493297 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 281..398 | 590 | 100 | Plus |
2L | 23513712 | 2L | 2496396..2496496 | 714..814 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:58:02 has no hits.
BS16383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:21 Download gff for
BS16383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9884-PD | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:07 Download gff for
BS16383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 60..873 | 2..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:31 Download gff for
BS16383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 60..873 | 2..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:31 Download gff for
BS16383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2493014..2493296 | 2..283 | 98 | -> | Plus |
2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
2L | 2496399..2496496 | 717..814 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:07 Download gff for
BS16383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2493014..2493296 | 2..283 | 98 | -> | Plus |
arm_2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
arm_2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
arm_2L | 2496399..2496496 | 717..814 | 98 | | Plus |
BS16383.complete Sequence
1031 bp assembled on 2007-05-07
GenBank Submission: FJ638136
> BS16383.complete
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGGTATCCCTGC
GGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGACTCGTCGGG
CGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCATCAAGACCT
GCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAACAACAGTGC
CTCTGGGATGAATGAAAGCTTTCTAGACCAT
BS16383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 1464 | CG9884-PD | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
oaf-RC | 999 | CG9884-PC | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
oaf-RB | 999 | CG9884-PB | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 76..1074 | 17..1015 | 4980 | 99.9 | Plus |
oaf-RC | 1734 | CG9884-RC | 76..1074 | 17..1015 | 4980 | 99.9 | Plus |
oaf-RB | 2831 | CG9884-RB | 76..1074 | 17..1015 | 4980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 398..717 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2496396..2496697 | 714..1015 | 1495 | 99.7 | Plus |
2L | 23513712 | 2L | 2493030..2493297 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 281..398 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:30:01 has no hits.
BS16383.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:21 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 1..999 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:38 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 60..1074 | 2..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:36 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 76..1073 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:21 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 60..1074 | 2..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:57 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 76..1073 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:57 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
2L | 2496399..2496696 | 717..1014 | 99 | | Plus |
2L | 2493030..2493296 | 17..283 | 100 | -> | Plus |
2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:36 Download gff for
BS16383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
arm_2L | 2493030..2493296 | 17..283 | 100 | -> | Plus |
arm_2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
arm_2L | 2496399..2496696 | 717..1014 | 99 | | Plus |
BS16383.pep Sequence
Translation from 16 to 1014
> BS16383.pep
MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV
SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS
NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM
CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR
SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT
LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA
QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDE*
BS16383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-PC | 332 | CG9884-PC | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PB | 332 | CG9884-PB | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PA | 332 | CG9884-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PD | 487 | CG9884-PD | 1..332 | 1..332 | 1770 | 100 | Plus |