Clone BS16383 Report

Search the DGRC for BS16383

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:163
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptoaf-RA
Protein status:BS16383.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16383.3prime Sequence

905 bp (814 high quality bases) assembled on 2007-05-15

> BS16383.3prime
ATGGTCTAGAAAGCTTTCATTCATCCCAGAGGCACTGTTGTTTCTGCCGC
ACATAATAGGTGAACTGTGTGCACTTGCGGCAGGTCTTGATGCCGCAGCG
ATAATTCGTCGGCTGTGCCTGCTGCTGGGCGCCCGACGAGTCCGCTCCGG
CGACTCCCTTGCCCTTGCAGTACTTGAGCCCGCAGGGATACCAGCCGATG
CAGGTCTCCAGGTTGCACAGGCAGGGCGCCCACAGGCTGCTCACCTCGTT
GCAGCGCGTCGAGAGCGTGTCCGGGAACTTTTCCGTGGCGGCCTCCAGGC
TGGAAATCGAGGAGCCTGGTAGCTCCGCCCAAGCTTTAAGGTCCACATCC
CGGACATAGGTGGCGTCCATGGCCTCGGCGCAGAGTCCCTGCAGATGTCT
GGTGATGGGCAGCGAGCGGTTGAGCTGTACCCAGCTGCTCATGGTGAAGG
TCTCACGGCCCTTGTCCTCCTCGGGAGTGCGGATGGTGTGCGGATTCTTC
TGGCGCAGCTTGGCCATTGCCGCCGAGGAGATGAAGTCGCCCTTGTTGAA
CTTGGTTGCGAAGCACATGACCTGGTACTGGCTCTGGCCACGCTCCTCCT
CGCCGAGAACCAGAGCCTTGAGGATTTGAACCTCATTGCGAAAGTCGATG
ACCTGGGTGATGAGCGTTCCGTCGGTCTTCTGAAACTCCAGCGTTATCAG
GTCCTCGCCAATGTTGGAGGTAATACTCTCCTGGATCACCTCGCCGCCCT
GATTTTGGACGTTAATGAGCAGCTGGGAGTGGGCGAATGCGTCCGCGTTC
ATCACTAAGTTGCACAGCANGAACCACAGAAACGCGCGACTGTGCTTGAA
ATAGTGATTTTTACTGACGACGCGACCCGCACAATTGCCGTGCGCTGGTG
TTCGA

BS16383.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9884-PA 999 oaf-RA 139..999 877..17 4236 99.6 Minus
CG9884-PB 999 oaf-RB 139..999 877..17 4236 99.6 Minus
CG9884-PC 999 oaf-RC 139..999 877..17 4236 99.6 Minus
CG9884-PD 1464 oaf-RD 139..999 877..17 4236 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 186..1074 905..17 4359 99.4 Minus
oaf-RC 1734 CG9884-RC 186..1074 905..17 4359 99.4 Minus
oaf-RB 2831 CG9884-RB 186..1074 905..17 4359 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 634..315 1600 100 Minus
2L 23513712 2L 2496396..2496697 318..17 1495 99.7 Minus
2L 23513712 2L 2493140..2493297 905..748 704 96.2 Minus
2L 23513712 2L 2495371..2495488 751..634 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:48:54 has no hits.

BS16383.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:37:22 Download gff for BS16383.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9884-PD 112..999 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:02 Download gff for BS16383.3prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 187..1074 17..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:30:10 Download gff for BS16383.3prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 187..1074 17..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:30:10 Download gff for BS16383.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2493141..2493296 749..904 97 -> Minus
2L 2495374..2495487 635..748 100 -> Minus
2L 2495570..2495888 316..634 100 -> Minus
2L 2496399..2496697 17..315 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:02 Download gff for BS16383.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2495570..2495888 316..634 100 -> Minus
arm_2L 2493141..2493296 749..904 97 -> Minus
arm_2L 2495374..2495487 635..748 100 -> Minus
arm_2L 2496399..2496697 17..315 99   Minus

BS16383.5prime Sequence

814 bp (813 high quality bases) assembled on 2007-05-15

> BS16383.5prime
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTG

BS16383.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9884-PA 999 oaf-RA 1..798 17..814 3965 99.8 Plus
CG9884-PB 999 oaf-RB 1..798 17..814 3965 99.8 Plus
CG9884-PC 999 oaf-RC 1..798 17..814 3965 99.8 Plus
CG9884-PD 1464 oaf-RD 1..798 17..814 3965 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 76..873 17..814 3975 99.9 Plus
oaf-RC 1734 CG9884-RC 76..873 17..814 3975 99.9 Plus
oaf-RB 2831 CG9884-RB 76..873 17..814 3975 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 398..717 1600 100 Plus
2L 23513712 2L 2493030..2493297 17..284 1340 100 Plus
2L 23513712 2L 2495371..2495488 281..398 590 100 Plus
2L 23513712 2L 2496396..2496496 714..814 490 99 Plus
Blast to na_te.dros performed on 2015-02-13 05:58:02 has no hits.

BS16383.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:31:21 Download gff for BS16383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9884-PD 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:07 Download gff for BS16383.5prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 60..873 2..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:31 Download gff for BS16383.5prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 60..873 2..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:31 Download gff for BS16383.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2493014..2493296 2..283 98 -> Plus
2L 2495374..2495487 284..397 100 -> Plus
2L 2495570..2495888 398..716 100 -> Plus
2L 2496399..2496496 717..814 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:07 Download gff for BS16383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2493014..2493296 2..283 98 -> Plus
arm_2L 2495374..2495487 284..397 100 -> Plus
arm_2L 2495570..2495888 398..716 100 -> Plus
arm_2L 2496399..2496496 717..814 98   Plus

BS16383.complete Sequence

1031 bp assembled on 2007-05-07

GenBank Submission: FJ638136

> BS16383.complete
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGGTATCCCTGC
GGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGACTCGTCGGG
CGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCATCAAGACCT
GCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAACAACAGTGC
CTCTGGGATGAATGAAAGCTTTCTAGACCAT

BS16383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 1464 CG9884-PD 1..999 17..1015 4980 99.9 Plus
oaf-RC 999 CG9884-PC 1..999 17..1015 4980 99.9 Plus
oaf-RB 999 CG9884-PB 1..999 17..1015 4980 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 76..1074 17..1015 4980 99.9 Plus
oaf-RC 1734 CG9884-RC 76..1074 17..1015 4980 99.9 Plus
oaf-RB 2831 CG9884-RB 76..1074 17..1015 4980 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 398..717 1600 100 Plus
2L 23513712 2L 2496396..2496697 714..1015 1495 99.7 Plus
2L 23513712 2L 2493030..2493297 17..284 1340 100 Plus
2L 23513712 2L 2495371..2495488 281..398 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:30:01 has no hits.

BS16383.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:31:21 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 1..999 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:38 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 60..1074 2..1015 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:36 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 76..1073 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:31:21 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 60..1074 2..1015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:57 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 76..1073 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:57 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2495570..2495888 398..716 100 -> Plus
2L 2496399..2496696 717..1014 99   Plus
2L 2493030..2493296 17..283 100 -> Plus
2L 2495374..2495487 284..397 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:36 Download gff for BS16383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2495374..2495487 284..397 100 -> Plus
arm_2L 2493030..2493296 17..283 100 -> Plus
arm_2L 2495570..2495888 398..716 100 -> Plus
arm_2L 2496399..2496696 717..1014 99   Plus

BS16383.pep Sequence

Translation from 16 to 1014

> BS16383.pep
MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV
SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS
NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM
CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR
SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT
LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA
QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDE*

BS16383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-PC 332 CG9884-PC 1..332 1..332 1770 100 Plus
oaf-PB 332 CG9884-PB 1..332 1..332 1770 100 Plus
oaf-PA 332 CG9884-PA 1..332 1..332 1770 100 Plus
oaf-PD 487 CG9884-PD 1..332 1..332 1770 100 Plus